scverse/rapids_singlecell-v0.8.1.zip
scverse-rapids_singlecell-64356f9
.cirun.yml
246 Bytes
.github
ISSUE_TEMPLATE
bug_report.md
1.2 kB
feature_request.md
511 Bytes
submit-question.md
159 Bytes
workflows
publish.yml
947 Bytes
test-gpu.yml
1.3 kB
.gitignore
194 Bytes
.pre-commit-config.yaml
531 Bytes
.readthedocs.yml
208 Bytes
LICENSE
1.1 kB
README.md
3.1 kB
ci
rsc_test_env.yml
208 Bytes
conda
rsc_rapids_23.04.yml
368 Bytes
rsc_rapids_23.08.yml
356 Bytes
docs
Installation.md
2.1 kB
Makefile
634 Bytes
Usage_Principles.md
2.6 kB
_static
cunndata.svg
76.9 kB
logo3.svg
24.9 kB
logo_dark.svg
24.9 kB
logo_light.svg
24.9 kB
_templates
autosummary
class.rst
1.2 kB
acknowledgements.md
640 Bytes
api.md
2.6 kB
basic.md
1.2 kB
conf.py
4.9 kB
index.md
706 Bytes
make.bat
765 Bytes
notebooks
autocorr_benchmark.ipynb
37.7 kB
demo_gpu-PR.ipynb
1.7 MB
demo_gpu-seuratv3-brain-1M.ipynb
2.1 MB
demo_gpu-seuratv3.ipynb
3.7 MB
demo_gpu.ipynb
3.9 MB
ligrec_benchmark.ipynb
45.2 kB
notebooks.rst
250 Bytes
references.md
582 Bytes
notebooks
autocorr_benchmark.ipynb
37.7 kB
data_downloader.ipynb
3.9 kB
demo_cpu-PR.ipynb
4.5 MB
demo_cpu-seuratv3-brain.ipynb
1.9 MB
demo_cpu-seuratv3.ipynb
7.7 MB
demo_cpu.ipynb
9.3 MB
demo_gpu-PR.ipynb
1.7 MB
demo_gpu-seuratv3-brain.ipynb
1.9 MB
demo_gpu-seuratv3.ipynb
3.7 MB
demo_gpu.ipynb
3.9 MB
ligrec_benchmark.ipynb
42.2 kB
pyproject.toml
2.3 kB
src
rapids_singlecell
__init__.py
78 Bytes
cunnData
__init__.py
25.1 kB
cunnData_funcs
__init__.py
339 Bytes
_hvg.py
36.8 kB
_normalize.py
14.6 kB
_pca.py
11.5 kB
_plotting.py
2.8 kB
_regress_out.py
4.8 kB
_scale.py
1.5 kB
_simple.py
18.2 kB
_utils.py
3.4 kB
dcg.py
29 Bytes
decoupler_gpu
__init__.py
68 Bytes
_method_mlm.py
4.6 kB
_method_wsum.py
6.3 kB
gr.py
27 Bytes
pl.py
40 Bytes
pp.py
30 Bytes
scanpy_gpu
__init__.py
415 Bytes
_clustering.py
5.6 kB
_diffmap.py
3.4 kB
_draw_graph.py
4.0 kB
_embedding_density.py
5.2 kB
_harmonpy_gpu.py
12.2 kB
_harmony_integrate.py
1.7 kB
_neighbors.py
7.1 kB
_pymde.py
2.4 kB
_rank_gene_groups.py
7.9 kB
_tsne.py
3.7 kB
_umap.py
5.4 kB
_utils.py
1.6 kB
squidpy_gpu
__init__.py
68 Bytes
_autocorr.py
6.0 kB
_gearysc.py
6.5 kB
_ligrec.py
29.5 kB
_moransi.py
6.3 kB
_utils.py
6.2 kB
tl.py
26 Bytes
tests
README.md
571 Bytes
_data
dummy.h5ad
253.4 kB
paul15_means.pickle
106.8 kB
test_data.h5ad
602.1 kB
_scripts
seurat_hvg.csv
50.9 kB
seurat_hvg_v3.csv.gz
397.1 kB
seurat_hvg_v3_batch.csv
62.9 kB
test_autocorr.py
1.3 kB
test_clustering.py
461 Bytes
test_cunndata.py
10.3 kB
test_decoupler.py
2.2 kB
test_embeddings.py
348 Bytes
test_emdedding_density.py
687 Bytes
test_hvg.py
10.6 kB
test_ligrec.py
12.9 kB
test_neighbors.py
1.5 kB
test_normalization.py
2.7 kB
test_pca.py
3.9 kB
test_preprocessing.py
532 Bytes
test_qc_metrics.py
3.6 kB
test_rank_genes_groups_logreg.py
1.7 kB