schuetzgroup/sdt-python-18.1.zip
schuetzgroup-sdt-python-3e2f27f
.github
workflows
testing.yml
1.2 kB
.gitignore
252 Bytes
.gitmodules
225 Bytes
.reuse
dep5
319 Bytes
CHANGELOG.rst
19.2 kB
LICENSES
BSD-3-Clause.txt
1.5 kB
CC-BY-4.0.txt
16.8 kB
CC0-1.0.txt
6.9 kB
LGPL-3.0-or-later.txt
7.4 kB
LicenseRef-Matplotlib-1.3.txt
2.4 kB
MIT.txt
1.1 kB
README.rst
4.3 kB
conda-recipe
meta.yaml
1.8 kB
doc
.gitignore
122 Bytes
CHANGELOG.rst
16 Bytes
Makefile
7.5 kB
brightness.rst
148 Bytes
changepoint.rst
149 Bytes
conf.py
10.3 kB
enclosing_circles.svg
7.5 kB
enclosing_circles.svg.license
110 Bytes
flatfield.rst
147 Bytes
fret.rst
142 Bytes
funcs.rst
143 Bytes
helper.rst
230 Bytes
image.rst
143 Bytes
index.rst
3.1 kB
io.rst
140 Bytes
loc.rst
141 Bytes
make.bat
7.1 kB
motion.rst
144 Bytes
multicolor.rst
148 Bytes
nbui.rst
142 Bytes
optimize.rst
146 Bytes
plot.rst
142 Bytes
roi.rst
141 Bytes
sim.rst
141 Bytes
spatial.rst
145 Bytes
profile
brightness.ipynb
527.1 kB
brightness.ipynb.license
112 Bytes
changepoint.ipynb
44.5 kB
changepoint.ipynb.license
112 Bytes
pytest.ini
174 Bytes
sdt
__init__.py
152 Bytes
_version.py
252 Bytes
brightness.py
27.3 kB
changepoint
__init__.py
6.0 kB
bayes_offline.py
21.1 kB
bayes_online.py
12.9 kB
pelt.py
9.1 kB
utils.py
6.7 kB
config.py
5.1 kB
exceptions.py
740 Bytes
flatfield.py
20.7 kB
fret
__init__.py
3.2 kB
sm_analyzer.py
53.3 kB
sm_plot.py
10.5 kB
sm_track.py
18.1 kB
utils.py
1.6 kB
funcs.py
11.8 kB
gui
SdtGui
BatchWorker.qml
1.6 kB
ChannelConfig.qml
11.0 kB
DataCollector.qml
5.1 kB
DatasetSelector.qml
2.1 kB
DirSelector.qml
1.0 kB
EditableSpinBox.qml
281 Bytes
FrameSelector.qml
1.3 kB
Handle.qml
5.0 kB
ImageDisplay.qml
5.7 kB
ImageSelector.qml
3.6 kB
ImageViewer.qml
1.2 kB
LocOptions.qml
10.4 kB
Locator.qml
3.1 kB
ModelComboBox.qml
2.9 kB
MplPathShape.qml
2.9 kB
MultiDataCollector.qml
2.3 kB
ROILabel.qml
412 Bytes
ROISelector.qml
9.5 kB
RealSpinBox.qml
1.4 kB
Registrator.qml
5.5 kB
ResizeHandles.qml
1.5 kB
Sdt.qml
534 Bytes
StatusDisplay.qml
1.6 kB
TrackOptions.qml
1.7 kB
qmldir
817 Bytes
__init__.py
1.1 kB
__main__.py
676 Bytes
_mpl_path_elements.py
3.3 kB
batch_worker.py
10.1 kB
breeze-icons
channel_config.py
11.5 kB
data_collector.py
1.3 kB
dataset.py
11.2 kB
dataset_selector.py
6.8 kB
frame_selector.py
2.8 kB
image_display.py
2.8 kB
image_selector.py
8.9 kB
image_viewer.py
810 Bytes
item_models.py
14.2 kB
legacy
__init__.py
117 Bytes
locator
__init__.py
168 Bytes
__main__.py
188 Bytes
algorithms.py
1.2 kB
app.py
1.7 kB
batch_progress.py
2.4 kB
batch_progress.ui
2.0 kB
batch_progress.ui.license
112 Bytes
file_chooser.py
7.3 kB
file_chooser.ui
1.1 kB
file_chooser.ui.license
112 Bytes
file_options.ui
1.2 kB
file_options.ui.license
112 Bytes
locate_filter.py
2.5 kB
locate_filter.ui
1.1 kB
locate_filter.ui.license
112 Bytes
locate_options.py
5.4 kB
locate_options.ui
3.1 kB
locate_options.ui.license
112 Bytes
locate_saver.py
1.0 kB
locate_saver.ui
1.7 kB
locate_saver.ui.license
112 Bytes
main_window.py
19.8 kB
t2d_options.ui
2.0 kB
t2d_options.ui.license
112 Bytes
trackpy_options.ui
3.5 kB
trackpy_options.ui.license
112 Bytes
workers.py
8.3 kB
option_model.py
13.6 kB
widgets
__init__.py
117 Bytes
micro_view.py
18.6 kB
micro_view_widget.ui
10.3 kB
micro_view_widget.ui.license
112 Bytes
loc_display.py
4.9 kB
loc_options.py
3.5 kB
locator.py
4.0 kB
mpl_backend.py
12.2 kB
option_chooser.py
7.3 kB
process_worker.py
6.3 kB
py_image.py
4.6 kB
qml_wrapper.py
16.2 kB
registrator.py
6.1 kB
roi_selector.py
10.7 kB
sdt.py
1.3 kB
thread_worker.py
8.3 kB
track_display.py
4.4 kB
track_options.py
2.3 kB
helper
__init__.py
3.6 kB
numba.py
3.9 kB
pandas.py
4.0 kB
raise_in_thread.py
1.7 kB
singleton.py
3.4 kB
slicerator.py
29.5 kB
image
__init__.py
2.9 kB
filters.py
10.0 kB
masks.py
4.1 kB
threshold.py
3.3 kB
utils.py
2.0 kB
io
__init__.py
5.8 kB
fs.py
3.4 kB
image_sequence.py
9.9 kB
sm.py
14.8 kB
tiff.py
5.9 kB
yaml.py
11.2 kB
loc
__init__.py
5.1 kB
bg_estimator.py
845 Bytes
cg
__init__.py
783 Bytes
algorithm.py
6.6 kB
api.py
2.9 kB
find.py
4.1 kB
restrict_roi.py
3.7 kB
daostorm_3d
__init__.py
287 Bytes
algorithm.py
5.7 kB
api.py
8.1 kB
data.py
9.8 kB
find.py
6.5 kB
find_numba.py
3.9 kB
fit.py
12.1 kB
fit_impl.py
11.7 kB
fit_numba.py
8.4 kB
fit_numba_impl.py
23.7 kB
make_batch.py
4.2 kB
raw_features.py
2.0 kB
restrict_roi.py
3.5 kB
snr_filters.py
2.4 kB
z_fit.py
13.4 kB
motion
__init__.py
4.8 kB
immobilization.py
22.6 kB
msd.py
32.4 kB
msd_base.py
10.2 kB
msd_dist.py
29.2 kB
multicolor
__init__.py
2.7 kB
coloc.py
22.1 kB
frame_selector.py
21.1 kB
registrator.py
28.7 kB
nbui
__init__.py
1.6 kB
channel_splitter.py
11.8 kB
file_dialog.py
4.8 kB
image_display.py
4.4 kB
image_selector.py
6.4 kB
locator.py
16.0 kB
roi_selector.py
19.4 kB
thresholder.py
12.4 kB
optimize
__init__.py
8.2 kB
affine_fit.py
3.2 kB
exp_fit.py
13.6 kB
gaussian_fit.py
5.5 kB
ransac.py
7.4 kB
plot.py
8.1 kB
roi
__init__.py
3.2 kB
imagej.py
7.2 kB
mask_roi.py
9.3 kB
roi.py
25.8 kB
sim
__init__.py
2.4 kB
fluo_image.py
8.3 kB
sm_tracks.py
5.2 kB
spatial.py
21.4 kB
testing.py
1.5 kB
setup.cfg
540 Bytes
setup.py
861 Bytes
tests
__init__.py
117 Bytes
conda-env.yml
412 Bytes
daostorm_3d
__init__.py
117 Bytes
data_algorithm
beads_2d.npz
3.3 kB
beads_2d.npz.license
107 Bytes
beads_2dfixed.npz
3.6 kB
beads_2dfixed.npz.license
107 Bytes
beads_3d.npz
3.7 kB
beads_3d.npz.license
107 Bytes
data_find
bead_finder.npz
2.0 kB
bead_finder.npz.license
107 Bytes
bead_img.npz
64.9 kB
bead_img.npz.license
107 Bytes
data_fit
beads_fit_2d.npz
111.5 kB
beads_fit_2d.npz.license
107 Bytes
beads_fit_2dfixed.npz
111.2 kB
beads_fit_2dfixed.npz.license
107 Bytes
beads_fit_3d.npz
111.1 kB
beads_fit_3d.npz.license
107 Bytes
beads_iter_2d.npz
110.7 kB
beads_iter_2d.npz.license
107 Bytes
beads_iter_2dfixed.npz
111.1 kB
beads_iter_2dfixed.npz.license
107 Bytes
beads_iter_3d.npz
110.2 kB
beads_iter_3d.npz.license
107 Bytes
calc_peaks.npy
752 Bytes
calc_peaks.npy.license
107 Bytes
fit_img.npz
480.5 kB
fit_img.npz.license
107 Bytes
fit_img_with_bg.npy
160.1 kB
fit_img_with_bg.npy.license
107 Bytes
iterate_2d_fixed.npy
224 Bytes
iterate_2d_fixed.npy.license
107 Bytes
z_params.yaml
242 Bytes
z_sim_finder.npz
247 Bytes
z_sim_finder.npz.license
107 Bytes
z_sim_fit_z.npz
1.5 kB
z_sim_fit_z.npz.license
107 Bytes
z_sim_img.npz
1.7 kB
z_sim_img.npz.license
107 Bytes
z_sim_iter_z.npz
2.8 kB
z_sim_iter_z.npz.license
107 Bytes
test_algorithm.py
3.7 kB
test_api.py
8.0 kB
test_data.py
3.3 kB
test_find.py
2.5 kB
test_find_numba.py
2.6 kB
test_fit.py
10.2 kB
test_fit_numba.py
11.7 kB
data_changepoint
offline_full_multiv.npz
36.0 kB
offline_full_multiv.npz.license
107 Bytes
offline_gauss_univ.npz
34.0 kB
offline_gauss_univ.npz.license
107 Bytes
online.npz
32.9 kB
online.npz.license
107 Bytes
data_exp
ode_solve.npy
240 Bytes
ode_solve.npy.license
107 Bytes
ode_tangent.npy
560 Bytes
ode_tangent.npy.license
107 Bytes
data_image
cg.npz
9.6 kB
cg.npz.license
107 Bytes
wavelet_bg.npz
23.2 kB
wavelet_bg.npz.license
107 Bytes
data_io
ij.tif
816 Bytes
ij.tif.license
107 Bytes
msdplot.h5
7.0 kB
msdplot.h5.license
107 Bytes
orig_pkc.h5
10.6 kB
orig_pkc.h5.license
107 Bytes
orig_pks.h5
11.1 kB
orig_pks.h5.license
107 Bytes
orig_pt2d.h5
23.4 kB
orig_pt2d.h5.license
107 Bytes
orig_thunderstorm.h5
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orig_thunderstorm.h5.license
107 Bytes
orig_trc.h5
9.0 kB
orig_trc.h5.license
107 Bytes
pMHC_AF647_200k_000_.pkc
6.6 kB
pMHC_AF647_200k_000_.pkc.license
107 Bytes
pMHC_AF647_200k_000_.pks
3.5 kB
pMHC_AF647_200k_000_.pks.license
107 Bytes
pMHC_AF647_200k_000__ch1.mat
869 Bytes
pMHC_AF647_200k_000__ch1.mat.license
107 Bytes
pMHC_AF647_200k_000__ch1.txt
455 Bytes
pMHC_AF647_200k_000__ch1.txt.license
107 Bytes
pMHC_AF647_200k_000__positions.mat
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pMHC_AF647_200k_000__positions.mat.license
107 Bytes
pMHC_AF647_200k_000__protocol.mat
739 Bytes
pMHC_AF647_200k_000__protocol.mat.license
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pMHC_AF647_200k_000__tracks.mat
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pMHC_AF647_200k_000__tracks.mat.license
107 Bytes
pMHC_AF647_200k_000__tracks.trc
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pMHC_AF647_200k_000__tracks.trc.license
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test_000_.SPE
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test_000_.SPE.license
108 Bytes
thunderstorm.csv
517 Bytes
thunderstorm.csv.license
107 Bytes
data_loc
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cg_loc_orig.npz.license
107 Bytes
cg_local_max_orig.npz
8.4 kB
cg_local_max_orig.npz.license
107 Bytes
pMHC_AF647_200k_000_.npz
187.9 kB
pMHC_AF647_200k_000_.npz.license
107 Bytes
params.yaml
249 Bytes
data_motion
00_index.txt
803 Bytes
00_index.txt.license
107 Bytes
B-1_000__positions.mat
19.2 kB
B-1_000__positions.mat.license
107 Bytes
B-1_000__protocol.mat
570 Bytes
B-1_000__protocol.mat.license
107 Bytes
B-1_000__tracks.mat
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B-1_000__tracks.mat.license
107 Bytes
B-1_000__tracks.trc
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B-1_000__tracks.trc.license
107 Bytes
B-1_001__positions.mat
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B-1_001__positions.mat.license
107 Bytes
B-1_001__protocol.mat
570 Bytes
B-1_001__protocol.mat.license
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B-1_001__tracks.mat
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B-1_001__tracks.mat.license
107 Bytes
B-1_001__tracks.trc
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B-1_001__tracks.trc.license
107 Bytes
all_displacements.pkl
48.7 kB
all_displacements.pkl.license
107 Bytes
all_sd_cdf.pkl
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all_sd_cdf.pkl.license
107 Bytes
all_square_displacements.pkl
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all_square_displacements.pkl.license
107 Bytes
bla_ch1.mat
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bla_ch1.mat.license
107 Bytes
displacements_B-1_000_.npy
49.3 kB
displacements_B-1_000_.npy.license
107 Bytes
emsd.h5
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emsd.h5.license
107 Bytes
emsd_matlab.npy
976 Bytes
emsd_matlab.npy.license
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imsd.h5
13.1 kB
imsd.h5.license
107 Bytes
msd.h5
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msd.h5.license
107 Bytes
square_displacements.npy
25.4 kB
square_displacements.npy.license
107 Bytes
data_roi
ellipse.roi
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ellipse.roi.license
107 Bytes
ellipse_roi.npz
917 Bytes
ellipse_roi.npz.license
107 Bytes
freehand.roi
220 Bytes
freehand.roi.license
107 Bytes
oval.roi
136 Bytes
oval.roi.license
107 Bytes
polygon.roi
154 Bytes
polygon.roi.license
107 Bytes
rect.roi
136 Bytes
rect.roi.license
107 Bytes
rects.zip
316 Bytes
rects.zip.license
107 Bytes
traced.roi
152 Bytes
traced.roi.license
107 Bytes
data_sim
gaussians.npz
6.6 kB
gaussians.npz.license
107 Bytes
test_brightness.py
17.6 kB
test_changepoint.py
27.2 kB
test_config.py
3.1 kB
test_flatfield.py
15.6 kB
test_fret.py
54.8 kB
test_funcs.py
4.9 kB
test_helper.py
10.0 kB
test_image.py
11.7 kB
test_io.py
23.7 kB
test_loc.py
6.6 kB
test_loc_cg.py
15.6 kB
test_motion.py
62.8 kB
test_multicolor.py
29.4 kB
test_multicolor_registrator.py
13.1 kB
test_optimize_affine_fit.py
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test_optimize_exp_fit.py
3.4 kB
test_optimize_gaussian_fit.py
3.5 kB
test_optimize_ransac.py
2.6 kB
test_roi.py
31.2 kB
test_sim.py
8.6 kB
test_slicerator.py
15.9 kB
test_spatial.py
8.2 kB
test_testing.py
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