LingyunXiong/Kidney_SexDiff-v1.0.0.zip
LingyunXiong-Kidney_SexDiff-6ac3260
Analysis
HPC_Bulk_RNAseq_Alighment.sh
1.2 kB
HPC_Bulk_RNAseq_FeatureCounts.sh
509 Bytes
HPC_snMultiomic_Data_Integration_ArchRpeaks.R
5.6 kB
HPC_snMultiomic_Data_Integration_Standard.R
6.9 kB
HPC_snMultiomic_GAS.R
8.5 kB
HPC_snMultiomic_sSeq.R
3.4 kB
Data
ArchR_PTpeaks_GlobalPeaks_DARs_PT-S3_mKOvsmWT.csv
510.5 kB
ArchR_PTpeaks_GlobalPeaks_DARs_PT-S3_mWTvsfWT.csv
5.2 MB
ArchRpeaks_WNN_PT-S1_fWTvsmWT_DEGs_DESeq2Norm_SSeq.csv
3.7 MB
ArchRpeaks_WNN_PT-S1_mKOvsmWT_DEGs_SSeq.csv
3.4 MB
ArchRpeaks_WNN_PT-S2_fWTvsmWT_DEGs_DESeq2Norm_SSeq.csv
3.8 MB
ArchRpeaks_WNN_PT-S2_mKOvsmWT_DEGs_SSeq.csv
3.5 MB
ArchRpeaks_WNN_PT-S3_fWTvsmWT_DEGs_DESeq2Norm_SSeq.csv
3.7 MB
ArchRpeaks_WNN_PT-S3_mKOvsmWT_DEGs_SSeq.csv
2.7 MB
Bulk_snMultiomic_Six2ArKO_consensus_SexGenes.csv
12.7 kB
CandidateGenes_KCE_Expression.csv
456 Bytes
CandidateGenes_Multiome_GAS.csv
784 Bytes
CandidateGenes_RNAscope_Levels.csv
459 Bytes
GlobalPeaks_Anno_Statistics_PT-S3_mWTvsfWT.csv
16.5 MB
HumanMouse_CommonSexGenes_PT_log2fc.csv
1.9 kB
Integrated_2Sex_LogNorm_meta.csv
7.9 MB
Integrated_ArchRpeaks_WNNmeta_recode.csv
20.3 MB
Integrated_Human_UMAP_PFnorm_rPCA_meta.csv
3.0 MB
Kidney_Male_Ar_KO_Log2FC_Six2_Sox2_FvsM.txt
31.0 kB
Kidney_snMultiomic_GAS.csv
394.0 kB
Liver_Alb_Sox2_ArKO_Male_Log2FC.csv
67.9 kB
Liver_ArKO_Meta_Table.txt
1.0 kB
Liver_ArKO_Read_Count_Table.txt
25.2 MB
Multiome_PT_fWTvsmWT_DEGs_ARresponse.csv
3.8 kB
Multiome_PT_fWTvsmWT_DEGs_full.csv
15.8 kB
PTgenes_8wk_GE_DoRothEA_TF_activity_score.csv
5.9 kB
SI_Table1.xlsx
620.2 kB
SI_Table2.xlsx
1.0 MB
SI_Table3.xlsx
940.1 kB
SI_Table4.xlsx
15.1 MB
SI_Table5.xlsx
457.5 kB
SI_Table6.xlsx
77.7 kB
SexGenes_4wk_DoRothEA_TF_activity_score.csv
4.9 kB
SexGenes_8wk_Core_DoRothEA_TF_activity_score.csv
3.9 kB
SexGenes_Core_Treatment_WashU_150PE_z-score.csv
34.7 kB
SexSpecific_Genes_4wk_8wk_z-score.csv
136.4 kB
TMM_Normalized_Counts_13448_genes.csv
13.0 MB
TMM_Normalized_Counts_13448_genes_Mean_Delta.csv
1.9 MB
ToppCluster_output_GO_BP_FDR_MinGene5.tsv
322.9 kB
ToppCluster_output_Pathway_FDR_MinGene5.tsv
59.3 kB
WashU_Treatment_meta.txt
1.8 kB
WashU_Treatment_raw_read_counts.txt
7.3 MB
WashU_age_sex_meta.txt
1.4 kB
WashU_age_sex_raw_read_counts.txt
10.6 MB
ensembl_mouse_genes.rds
115.3 kB
Figures
Fig1I-J.R
1.9 kB
Fig2B-C.R
3.7 kB
Fig2D.R
1.3 kB
Fig2F.R
2.6 kB
Fig2H.R
992 Bytes
Fig3B.R
1.7 kB
Fig3C.R
1.3 kB
Fig3D.R
1.5 kB
Fig3F.R
923 Bytes
Fig4B-C.R
3.4 kB
Fig4D.R
1.9 kB
Fig4E.R
792 Bytes
Fig4F.R
678 Bytes
Fig4G-H.R
5.1 kB
Fig4J.R
796 Bytes
Fig5A.R
1.3 kB
Fig5B.R
1.2 kB
Fig5C-D.R
4.6 kB
Fig5G.R
2.8 kB
Fig5H.R
889 Bytes
Fig5I-J.R
3.0 kB
Fig6.R
1.6 kB
Fig7A.R
690 Bytes
Fig7C.R
2.7 kB
Fig7D.R
961 Bytes
Fig7E.R
1.6 kB
Fig7G.R
897 Bytes
Fig7H.R
959 Bytes
Fig7I.R
731 Bytes
Fig7K.R
735 Bytes
FigS2G.R
1.7 kB
Graphic_Abstract.png
739.9 kB
LICENSE.md
1.1 kB
README.md
572 Bytes