jyyulab/LVIS_pipeline-release_20230714.zip
jyyulab-LVIS_pipeline-300ec34
README.md
2.2 kB
classifier
P2-P10_ROC.pdf
13.7 kB
density_plot.R
7.9 kB
log2_output_density.pdf
41.7 kB
no_P1_classification.ipynb
1.8 MB
img
diversity.png
22.7 kB
pie.png
105.8 kB
sample_input.png
294.7 kB
track.png
685.0 kB
more_vis_analysis.md
731 Bytes
qsLAM_PCR
01-fastqc.sh
664 Bytes
02-cutadapt.sh
1.4 kB
05-makeNewFastq.sh
1.2 kB
06-readLen.sh
1.1 kB
10-bwa.sh
1.1 kB
11-bam2bed.sh
1.8 kB
12-bed2wig.sh
1.2 kB
13-bed2peak.noFilter.sh
2.4 kB
14-peakAnnotate.sh
2.8 kB
15-extract_info.sh
1.1 kB
16-refine.sh
1.5 kB
bedGraphToBigWig
3.1 MB
hg19.chrom.sizes
2.0 kB
integrated_LVIS_pipeline.sh
13.0 kB
integrated_LVIS_pipeline_paramters.txt
354 Bytes
known20sites.bed
673 Bytes
myjoin
33.6 kB
target_gene_prediction.R
3.7 kB
test_data
2128185_Sp0_S1_L001_R1_001.fastq.gz
13.5 MB
2128185_Sp0_S1_L001_R2_001.fastq.gz
14.3 MB
scATAC_vis
04_matchID.py
818 Bytes
provirus_sequence
4.7 kB
steps_for_qsLAM_PCR_pipeline.md
4.3 kB
steps_profile_VIS_scMultiome.md
5.1 kB
vis_analysis
LVIS_functions.R
24.9 kB
all_P4_collected_IS.RData
630.0 kB
compile_VIS.R
3.5 kB
hg19.basic.annotation.update.Rdata
11.0 MB
vis_visualization_examples.R
1.6 kB