Build a reference for AMP phase II RA CITE-seq, and map AMP phase I RA scRNA-seq to this reference

Fan Zhang

2021-05-14

Load QCed cells from mRNA and protein matrices

Build reference

Visualize results

Visualize cell type lineage protein markers

Protein expression of cell type lineage markers help idenitfy key subpopulations

Now let's project the fine grained clusters defined by cell type-specific analysis onto coarse anlaysis/global embeddings:

Map query

Map AMP phase I RA cells (query) generated from CEL-Seq2 to the built reference

Reference: AMP phase II; Query: AMP phase I