Information for 4-HAGTCGGCTT (Motif 9)

G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T
Reverse Opposite:
G T C A C T G A A C T G G T A C A G T C C T A G C G T A G T A C A C G T C A T G
p-value:1e-6
log p-value:-1.506e+01
Information Content per bp:1.745
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.94%
Number of Background Sequences with motif102.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets61.0 +/- 25.9bp
Average Position of motif in Background52.6 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-HAGTCGGCTT-
TAAGGCGTCTTG
A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

ZFP42/MA1651.1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----HAGTCGGCTT------
GTTCCAAAATGGCTGCCTCCG
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:HAGTCGGCTT-
---TWGTCTGV
G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--HAGTCGGCTT
AACAGATGGC--
A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----HAGTCGGCTT--
AAGGCCAGATGGTCCGG
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-HAGTCGGCTT-
CAAGATGGCGGC
A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-HAGTCGGCTT
CCAGACRSVB-
A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

NEUROD1/MA1109.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---HAGTCGGCTT
GGACAGATGGCAG
A C G T A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--HAGTCGGCTT--
NTTATTCGTCATNC
A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T A C G T A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----HAGTCGGCTT
GGAACAGATGGCA-
A C G T A C G T A C G T A C G T G T A C C G T A A C T G C G A T A G T C A C T G A C T G A G T C A G C T A C G T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A A C G T