Information for 8-GAGAGTTAATGA (Motif 9)

A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A C G T A G C T C G T A G T C A A G T C A C G T A G T C A C G T A T G C
p-value:1e-9
log p-value:-2.233e+01
Information Content per bp:1.930
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.0 +/- 23.0bp
Average Position of motif in Background72.4 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF652/MA1657.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGAGTTAATGA
GAAAGAGTTAAA--
A C G T A C G T A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A
A C T G T C G A T G C A C T G A A T C G C T G A C T A G C G A T A G C T G C T A T G C A G C T A A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAGAGTTAATGA-----
-NNAATTAATGACCNNN
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GAGAGTTAATGA
----GKTAATGR
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

NKX6-3/MA1530.1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GAGAGTTAATGA-
----TTTAATGAN
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T C G A T C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G

HOXB4/MA1499.1/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GAGAGTTAATGA-
-----NTAATGAT
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GAGAGTTAATGA-
-----TTAATTAN
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

HOXC4/MA1504.1/Jaspar

Match Rank:7
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GAGAGTTAATGA-
-----NTAATGAN
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A C G T A A G C T A C T G C T G A A G T C

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:8
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GAGAGTTAATGA---
-----ATAATGAGGT
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGTTAATGA
NMMNBAAAGGGTTAA---
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A A C G T A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GAGAGTTAATGA-
-----NTAATGAN
A T C G C G T A A C T G C G T A A C T G A C G T A C G T C T G A G T C A A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A G C T C G T A C G T A A G C T A C T G C T G A A G C T