Information for 2-GGGMATTYCC (Motif 4)

C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
Reverse Opposite:
C T A G A C T G C T G A C G T A C G T A G A C T A C G T A G T C G T A C A G T C
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.748
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif19.61%
Number of Background Sequences with motif671.4
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets35.7 +/- 27.4bp
Average Position of motif in Background50.6 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGMATTYCC
GGGAATTTCC
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGMATTYCC
GGGGATTTCC
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGGMATTYCC
GGGAATTTCC
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GGGMATTYCC
NGGGGATTTCCC
A C G T A C G T C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GGGMATTYCC
GGGGATTTCC-
A C G T C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGGMATTYCC--
GGGGATTCCCCC
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGGMATTYCC--
AGGGGATTCCCCT
A C G T C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C A C G T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGGMATTYCC--
--GCATTCCAGN
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C A C G T A C G T
A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GGGMATTYCC--
--RCATTCCWGG
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C A C G T A C G T
A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

RELB/MA1117.1/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGMATTYCC---
--GAATTCCCCGG
C T A G A C T G C T A G T G C A C T G A C G A T A C G T G A C T A G T C G A T C A C G T A C G T A C G T
A C G T A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G