Information for 21-TGACCTACAGTC (Motif 16)

C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
Reverse Opposite:
T A C G G C T A A G T C C G A T A T C G A G C T C T G A A C T G A C T G A C G T A G T C G C T A
p-value:1e-11
log p-value:-2.572e+01
Information Content per bp:1.722
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.1 +/- 28.1bp
Average Position of motif in Background53.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGACCTACAGTC-------
TGACCTAAAGTAACCTCTG
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTACAGTC-
TTGACCTANTTATN
A C G T C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTACAGTC
NNHYTGACCTAGWTT-
A C G T A C G T A C G T A C G T C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGACCTACAGTC
TGACCT------
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGACCTACAGTC
TGACCTTGAT--
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

NR1D1/MA1531.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTACAGTC--
NTGACCTACTGACCC
A C G T C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C A C G T A C G T
G A T C G A C T T C A G T G C A G A T C G T A C A G C T T G C A A T G C C G A T T C A G T G C A G A T C G T A C A G T C

ZKSCAN1/MA1585.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGACCTACAGTC
-CACCTACTAT-
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
A C G T A T G C T C G A G T A C T A G C A C G T C G T A G A T C A C G T T C G A A G C T A C G T

RORC/MA1151.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGACCTACAGTC
TGACCTANTTAN
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGACCTACAGTC----
TGACCTNTAGTAACCC
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C A C G T A C G T A C G T A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGACCTACAGTC
TGACCTARTT--
C G A T C T A G G T C A T A G C T G A C G A C T T C G A T A G C C G T A T C A G C G A T A T G C
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T