Information for 2-GGAAATCCCC (Motif 2)

A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G T A C G G T C A A C G T A C G T A C G T A G T C A G T C
p-value:1e-17
log p-value:-4.105e+01
Information Content per bp:1.885
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif10.89%
Number of Background Sequences with motif57.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets31.2 +/- 19.1bp
Average Position of motif in Background47.1 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATCCCC
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATTCCC
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAANCCCC
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATCCCC-
GGGAAATCCCCN
A C G T A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGAAATCCCC
GGAAATTCCC
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC
GGGGGAATCCCC
A C G T A C G T A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
A C G T A C G T A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

MZF1/MA0056.2/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGAAATCCCC----
-CAAATCCCCACTT
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G T A C G C T A T G C A T G C A C G A T T A G C G T A C G A T C G A T C G C T A G A T C G C A T A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
A C G T A C G T A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

RELB/MA1117.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGAAATCCCC--
-GAATTCCCCGG
A C T G A C T G C G T A T G C A C G T A A C G T A G T C A G T C A G T C A G T C A C G T A C G T
A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G