Information for 7-CGGAGCGA (Motif 9)

A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C A C G T A G T C A G T C A C T G
p-value:1e-1
log p-value:-3.536e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets58.8 +/- 19.8bp
Average Position of motif in Background50.4 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:CGGAGCGA
CGGAGC--
A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGGAGCGA-
GCGGACCBWA
A C G T A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T
A T C G G T A C A C T G A C T G G T C A A T G C A T G C A T G C G C T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGGAGCGA
--CAGCC-
A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CGGAGCGA
RGKGGGCGGAGC--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGGAGCGA
NGAAGC--
A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGGAGCGA-----
CCTTCGGCGCCAAAAGG
A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGGAGCGA-----
AGCTCGGCGCCAAAAGC
A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGGAGCGA---
-GGCGGGAARN
A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGGAGCGA--
BTKGGCGGGAAA
A C G T A C G T A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T A C G T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGAGCGA----
TGGCGGGAAAHB
A G T C A C T G A C T G C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G