Information for 3-CAGAGGGCGC (Motif 5)

A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G G T A C A C T G A G T C A G T C A G T C A C G T A G T C C G A T A C T G
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.945
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif10.77%
Number of Background Sequences with motif201.6
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets53.3 +/- 22.7bp
Average Position of motif in Background45.2 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCFL/MA1102.2/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAGAGGGCGC
AGCAGGGGGCGC
A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
T C G A T A C G A T G C T G C A A T C G T C A G A T C G A T C G C A T G G A T C T C A G A T G C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCGC-----
GCCASCAGGGGGCGCYVNNG
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NEUROD1/MA1109.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGGCGC
GGACAGATGGCAG
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCGC
AACAGATGGC--
A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC-----
ATAAGGGCGCGCGAT
A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAGAGGGCGC
GGAACAGATGGCA-
A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGGCGC--
TGGCCACCAGGGGGCGCTA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC------
TTGGGGGCGCCCCTAG
A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGGCGC
RHHCAGAGAGGB-
A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC-----
ATAAAGGCGCGCGAT
A G T C C G T A A C T G C G T A A C T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T