Information for 1-GCTTAGTTGG (Motif 1)

A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C T G A G T C
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets5.0 +/- 0.0bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTTAGTTGG---
GCACAYAGTAGGKCY
A C G T A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

LHX2/MA0700.2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTTAGTTGG--
-NNTAATTGGNN
A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T
A C G T C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTTAGTTGG
--NTAATTGG
A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

SOX10/MA0442.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGTTGG
NNCTTTGTTNN
A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

PH0006.1_Barhl2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGTTGG-----
NNNTTAATTGGTTTTT
A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0108.1_Msx3/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGTTGG-----
NNNTTAATTGGTTTTN
A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTTAGTTGG
--NTAATTGN
A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGTTGG-----
GNNTTAATTGGTTGTT
A C G T A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

MSX1/MA0666.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTTAGTTGG
--NTAATTGG
A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G

LHX9/MA0701.2/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTTAGTTGG
--NTAATTAG
A C T G A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G
A C G T A C G T A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G