Information for 19-GCTAATTACCAA (Motif 12)

A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A C T G A C G T C G T A C G T A C G A T C A G T C G T A C T A G A T G C
p-value:1e-12
log p-value:-2.803e+01
Information Content per bp:1.889
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.4 +/- 24.2bp
Average Position of motif in Background76.7 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB7/MA1501.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACCAA
GNTAATTACC--
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
A T C G A G C T A G C T C G T A G T C A A C G T A C G T T C G A G T A C A G T C A C G T A C G T

HOXD3/MA0912.2/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCTAATTACCAA
-CTAATTAC---
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A A T G C A C G T A C G T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTAATTACCAA
GCTAATTAAC--
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C A C G T A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACCAA--
GTTAATTANCTCNN
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCTAATTACCAA--
AAGGTAATTACCTAAT
A C G T A C G T A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A A C G T A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

EMX2/MA0886.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACCAA
NCTAATTANN--
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACCAA
NCTAATTA----
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTACCAA
NTGAGCTAATTACCNT
A C G T A C G T A C G T A C G T A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

PH0060.1_Hoxb5/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTACCAA
ATGNGCTAATTANCNT
A C G T A C G T A C G T A C G T A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

EVX1/MA0887.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCTAATTACCAA
GGTAATTAGC--
A T C G A G T C A C G T G C T A C G T A A C G T A C G T C G T A A G T C A G T C C G T A G T C A
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C A C G T A C G T