Information for 4-CTTGGCTACA (Motif 17)

A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C T G
p-value:1e-3
log p-value:-8.160e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets17.0 +/- 0.0bp
Average Position of motif in Background54.1 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.73
Offset:-7
Orientation:forward strand
Alignment:-------CTTGGCTACA------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCTACA--
TACCCTAGTTACCGA
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTTGGCTACA
TACTTGGCAGA-
A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTGGCTACA
NTTGGCANN-
A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTGGCTACA-
SCCTAGCAACAG
A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCTACA----
CTACTTGGATACGGAAT
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

DMRT3/MA0610.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTGGCTACA--
-NTTGATACATT
A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTTGGCTACA--
AATTGTTACATT
A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T A C G T
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCTACA
TGATTGGCTANN
A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTACA-
TNCCATAGCAACNN
A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A G T C C G T A A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G