Information for 3-TGTTTTGGCCTT (Motif 4)

A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T
Reverse Opposite:
C G T A C G T A A T C G A C T G A T G C A G T C C G T A G T C A C T G A C G T A A T G C C T G A
p-value:1e-8
log p-value:-1.973e+01
Information Content per bp:1.774
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif10.77%
Number of Background Sequences with motif159.0
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets45.0 +/- 26.6bp
Average Position of motif in Background48.6 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TGTTTTGGCCTT-
---BNTGDCCTTG
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTTTGGCCTT
NNCTTTGTTTTGNTNNN
A C G T A C G T A C G T A C G T A C G T A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGTTTTGGCCTT
----GTGACCTT
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGTTTTGGCCTT----
----GTGACCTTGRVN
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A C T T A C G G T C A G T A C G A T C G A C T A G C T A T C G T C G A T A C G T A G C

NR5A1/MA1540.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TGTTTTGGCCTT---
----NTGACCTTGAN
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGTTTTGGCCTT---
-----TGACCTTGAV
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

NR2F2/MA1111.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGTTTTGGCCTT--
---NNTGACCTTTN
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGTTTTGGCCTT---
-----TGACCTTGAN
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Rarb/MA0857.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTTTTGGCCTT-
TGACCTTTTGACCTTT
A C G T A C G T A C G T A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TGTTTTGGCCTT--
----TTGAMCTTTG
A G C T A T C G A C G T A G C T A C G T A C G T C T A G A T C G T G A C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G