Information for 1-CCAATGAGGAGC (Motif 3)

A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A G T C A C G T A G T C C G T A A C G T A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGGAGC
AGCCAATCGG----
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFYB/MA0502.2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCAATGAGGAGC
NTGGCCAATGAG----
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G A C G T A C G T A C G T A C G T

NFYC/MA1644.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGGAGC
AGCCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCAATGAGGAGC
AACCAATCAGA---
A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGAGGAGC
ACTAGCCAATCA-----
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCAATGAGGAGC
CCCAATTAGC---
A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAATGAGGAGC
CCAATTAG----
A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAATGAGGAGC
ATAATGAGGT--
A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
C T G A G A C T T C G A C G T A A C G T A C T G G C T A A C T G T A C G C G A T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAATGAGGAGC
GCCAATTAGC---
A C G T A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CCAATGAGGAGC
------CGGAGC
A G T C A G T C C G T A C G T A A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C