Information for 23-GAGAAATTAG (Motif 30)

A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C G T A C G T A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.494e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background56.5 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD3/MA0912.2/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GAGAAATTAG
--GTAATTAG
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G

PH0039.1_Mnx1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGAAATTAG-----
GTACTAATTAGTGGCG
A C G T A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

PRDM1/MA0508.3/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAATTAG
NAGAGAAAGNA-
A C G T A C G T A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G
C T G A C T G A C A T G G C T A C A T G G C T A C G T A G C T A C A T G C G T A C T G A A C G T

GBX2/MA0890.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GAGAAATTAG-
-ACCAATTAGC
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GAGAAATTAG----
GAAGACCAATTAGCGCT
A C G T A C G T A C G T A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

TLX2/MA1577.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAGAAATTAG
--CTAATTAG
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G

HOXB7/MA1501.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGAAATTAG-
-GGTAATTAAC
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T T C A G A C T G A G C T G T C A G T C A A C G T G C A T C T G A T C G A T A G C

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGAAATTAG-
-ACTAATTAGC
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

GBX1/MA0889.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGAAATTAG-
-ACTAATTAGC
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G A C G T
A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

VSX1/MA0725.1/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAGAAATTAG
--NTAATTAG
A C T G C G T A A C T G C G T A C G T A C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G