Information for 6-CCTGCTTTTATA (Motif 6)

A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTTTTATA-
NNNNNNCTTTTATAN
A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTTTTATA-
NNNNNNCTTTTATAN
A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CCTGCTTTTATA---
---CCTTTTATAGNC
A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCTGCTTTTATA
CTGCCWVCTTTTRTA
A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A
A G T C G A C T A C T G G A T C G T A C C G T A T G A C A G T C C G A T A G C T A C G T A C G T C T A G G A C T C T G A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCTGCTTTTATA---
-----TTTTATTRGN
A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCTGCTTTTATA---
-----TTTTATKRGG
A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCTGCTTTTATA---
-----TTTTATGGCM
A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTGCTTTTATA--
----NTTTTATDRG
A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTTTTATA
NNCCTGCTGNG---
A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G A C G T A C G T A C G T

Zic2/MA1629.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTTTTATA
CCCCCTGCTGTGNN-
A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T C G T A A C G T C G T A
A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G A C G T