Information for 1-TTGGCATHTCAT (Motif 1)

A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
Reverse Opposite:
C G T A A C G T A C T G C G T A C A G T G T C A A C G T C T A G A G T C A G T C C G T A C T G A
p-value:1e-5
log p-value:-1.329e+01
Information Content per bp:1.812
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif63.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets15.7 +/- 9.7bp
Average Position of motif in Background51.1 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCATHTCAT
NTTGGCANN----
A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATHTCAT
NNTTGGCANN----
A C G T A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATHTCAT
GGTTGGCAT-----
A C G T A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGGCATHTCAT
TACTTGGCAGA----
A C G T A C G T A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCATHTCAT
CTTGGCAA-----
A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATHTCAT
VGCTGGCA------
A C G T A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TTGGCATHTCAT
NGTAGGTTGGCATNNN--
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTGGCATHTCAT----
-TNGAATTTCATTNAN
A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGGCATHTCAT--
ATTTGCATAACAATG
A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PH0161.1_Six1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGGCATHTCAT----
GATGGGGTATCATTTTT
A C G T A G C T A C G T A C T G A C T G A G T C G T C A A C G T G A C T A C G T A G T C C G T A C G A T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T