Information for 3-AGCAGGKYSSMG (Motif 4)

C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
Reverse Opposite:
G T A C A C T G A T G C A T G C C T G A T G C A A G T C A G T C A C G T A C T G A G T C A G C T
p-value:1e-9
log p-value:-2.250e+01
Information Content per bp:1.800
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif9.28%
Number of Background Sequences with motif174.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets54.6 +/- 26.5bp
Average Position of motif in Background51.1 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGKYSSMG
CACAGCAGGGG----
A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T A C G T A C G T

Zic2/MA1629.1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGGKYSSMG
CTCACAGCAGGGGG---
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGKYSSMG
CACAGCAGGGGG---
A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGKYSSMG
DCHCAGCAGGRGGCC-
A C G T A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGKYSSMG
SDGCAGGTGCNS-
A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGKYSSMG
NNGCAGGTGNN--
A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGKYSSMG
DCTCAGCAGG------
A C G T A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

TCF3/MA0522.3/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGKYSSMG
NNGCAGGTGNN--
A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T A C G A T C G T C A G A G T C T C G A A T C G T A C G A G C T T A C G A T G C A T C G A C G T A C G T

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGCAGGKYSSMG
RGCAGGTGYA--
C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T C G A T C A G T A G C C G T A T A C G T A C G A G C T C A T G A G C T T C G A A C G T A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGKYSSMG
CHCAGCRGGRGG---
A C G T A C G T A C G T C T G A A C T G A G T C C G T A A C T G A C T G A C G T G A C T A T C G A T C G G T A C A C T G
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T A C G T A C G T