Information for 6-ATCTTGGCTA (Motif 16)

C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C T G C G T A A C G T
p-value:1e-3
log p-value:-7.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets15.0 +/- 0.0bp
Average Position of motif in Background30.0 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCTTGGCTA-
TACTTGGCAGA
C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATCTTGGCTA-
--NTTGGCANN
C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATCTTGGCTA
TNTTATCTTATCTT
A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATCTTGGCTA-
-NNTTGGCANN
C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATCTTGGCTA-
---TWGTCTGV
C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATCTTGGCTA
--CTTGGCAA
C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATCTTGGCTA----
TACCCTAGTTACCGA
A C G T C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------ATCTTGGCTA
NNTGTTTATTTTGGCA-
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T

GATA6/MA1104.2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATCTTGGCTA-
TTATCTTATCTTT
A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T
G C A T G C A T G C T A A G C T A T G C G C A T G C A T C G T A G C A T G A T C G C A T G A C T G C A T

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ATCTTGGCTA--------
ACTGACCCTTGGTTACCACAAAG
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G