Information for 2-TRWTGAAAKARA (Motif 2)

A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T G T C A C G A T A C G T A C G T G T A C C G T A C G T A A G T C C G T A
p-value:1e-9
log p-value:-2.228e+01
Information Content per bp:1.866
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets45.0 +/- 18.3bp
Average Position of motif in Background55.7 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TRWTGAAAKARA
ATGATGCAAT---
A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T A C G T

ATF4/MA0833.2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TRWTGAAAKARA
AAATGATGCAATAA-
A C G T A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
C T G A C T G A T C G A G C A T C A T G C T G A A G C T C T A G G A T C G T C A C G T A A G C T G T C A G C T A A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TRWTGAAAKARA
GGYAATGAAA----
A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TRWTGAAAKARA
MTGATGCAAT---
A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TRWTGAAAKARA
NATGTTGCAA----
A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T

CEBPG(var.2)/MA1636.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TRWTGAAAKARA
AAATGATGCAATCAT
A C G T A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
C G T A C G T A T C G A C G A T C A T G C T G A G A C T C T A G G T A C G T C A C G T A A G C T G T A C G C T A G A C T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TRWTGAAAKARA
HDGYAATGAAAN---
A C G T A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TRWTGAAAKARA
GGTGYTGACAGS--
A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T

PRDM4/MA1647.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TRWTGAAAKARA-
--NAGAAACAGNN
A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A A C G T
A C G T A C G T C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TRWTGAAAKARA
GGCMATGAAA----
A C G T A C G T A C G T C T A G C G A T A C G T A C T G C G T A C G T A C G T A A C G T C G T A C T A G C G T A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T A C G T