Information for 19-GAGGAGCAAA (Motif 20)

A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A C G T A G T C
p-value:1e-2
log p-value:-6.806e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background52.4 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCAAA
-CGGAGC---
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGAGCAAA---
ARGAGGMCAAAATGW
A C G T A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGGAGCAAA
DAGGTGTBAA
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A
C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A

ZNF263/MA0528.2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAGGAGCAAA
GGGGGGAGGAGG---
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A
T C A G A T C G C T A G T A C G A T C G A C T G G T C A A C T G A T C G T G C A T A C G A T C G A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCAAA-
-GGGAGGACNG
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T
A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGGAGCAAA--
--GGAACAAAGR
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGGAGCAAA-----
AAAGATCAAAGGGTT
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGGAGCAAA
GGAGGGGGAA-
A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGGAGCAAA------
AGAAGAACAAAGGACTA
A C G T A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCAAA-
-AGGTGTTAAT
A C T G C G T A A C T G A C T G C G T A A C T G A G T C C G T A C G T A C G T A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T