Information for 8-CTCTAAGCCCTG (Motif 8)

A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCTAAGCCCTG
---TAATCCCN-
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCTAAGCCCTG
NNCTAATCCCNN
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

PITX1/MA0682.2/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCTAAGCCCTG
--CTAATCCC--
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTCTAAGCCCTG
-CTTAATCCC--
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCTAAGCCCTG
-GCTAATCC---
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCTAAGCCCTG
-NYTAATCCYB-
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCTAAGCCCTG--
AATCGTTAATCCCTTTA
A C G T A C G T A C G T A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PITX2/MA1547.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTCTAAGCCCTG
--ATAATCCC--
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTCTAAGCCCTG
--ATAATCCC--
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTCTAAGCCCTG
-GCTAATCCCC-
A G T C A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C T G
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T