Information for 18-AGTGACTATG (Motif 18)

C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C G T A A C T G A C G T A G T C C G T A A G T C A C G T
p-value:1e-7
log p-value:-1.721e+01
Information Content per bp:1.971
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 28.0bp
Average Position of motif in Background66.9 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACTATG---
NNNGTAACTANGNNA
A C G T A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTGACTATG
NCGTGACN---
A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTGACTATG-
CTGTTGCTAGGS
A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGTGACTATG--
---GACAATGNN
C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

RFX1/MA0509.2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTGACTATG---
CTGTTGCTATGGCA
A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

RFX3/MA0798.2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTGACTATG---
CGGTTGCTATGGCA
A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTGACTATG---
--AAACAATGGAA
C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACTATG---
NCCGTTGCTANGNGN
A C G T A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

SOX13/MA1120.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTGACTATG---
--AAACAATGGCA
C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AGTGACTATG-------
NNTNGNNGTAACCAAGNNNNAGN
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C T A G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T