Information for 3-TCATGKTKMWGA (Motif 3)

A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G T G C A C T G A G T C A A G T C C G T A A C G T A C T G C G T A
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.868
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.94%
Number of Background Sequences with motif38.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets65.5 +/- 21.6bp
Average Position of motif in Background41.0 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TCATGKTKMWGA-
GTATCAGGTTTCAGNN
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

SIX1/MA1118.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCATGKTKMWGA
TATCAGGTTAC---
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCATGKTKMWGA
GKVTCADRTTWC---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCATGKTKMWGA
AGTCACGC------
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TCATGKTKMWGA
VGGTVTCAGRTTWCA--
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:6
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------TCATGKTKMWGA
GGAGCTGTCCATGGTGCTGA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

IKZF1/MA1508.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCATGKTKMWGA
NCTTCCTGTTNN---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
T C G A A G T C G C A T A G C T A G T C G A T C G C A T A T C G A G C T A C G T A G C T A G T C A C G T A C G T A C G T

FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCATGKTKMWGA
NVWTGTTTAC--
A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------TCATGKTKMWGA-
GGCGCTGTCCATGGTGCTGAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCATGKTKMWGA
GKMTCADRTTWC---
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C G T A G C T A C G T G T A C C G A T A C T G C G T A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T