Information for 2-CTTAGTTGGT (Motif 12)

A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C C G T A C G T A A G T C A C G T C G T A C G T A A C T G
p-value:1e-3
log p-value:-9.141e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background16.0 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGTTGGT----
NNNTTAATTGGTTTTT
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGTTGGT----
NNNTTAATTGGTTTTN
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0005.1_Barhl1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGTTGGT----
GNNTTAATTGGTTGTT
A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTTAGTTGGT--
GCACAYAGTAGGKCY
A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

LHX2/MA0700.2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTAGTTGGT-
NNTAATTGGNN
A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T
C G T A G C A T C G A T C G T A G C T A C G A T C G A T C T A G T A C G G C A T G C A T

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTTAGTTGGT
-NTAATTGG-
A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T
A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTTAGTTGGT-
-ATAGTAGGTG
A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T
A C G T T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTAGTTGGT---
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTAGTTGGT---
ANNCATTAATTGCTNGN
A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTTAGTTGGT---
ATTCNTTAATTGCTTGT
A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T