Information for 5-CCCCAGACACGT (Motif 7)

A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C G T A C T G A G C T A G T C A C G T A C T G A C T G A C T G A C T G
p-value:1e-4
log p-value:-1.083e+01
Information Content per bp:1.936
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.7 +/- 23.2bp
Average Position of motif in Background55.5 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

INSM1/MA0155.1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CCCCAGACACGT
CGCCCCCTGACA---
A C G T A C G T A C G T A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCCCAGACACGT
--CCAGACAG--
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCCCAGACACGT
--CCAGACRSVB
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCCAGACACGT--
CAAATCCAGACATCACA
A C G T A C G T A C G T A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCCAGACACGT
-TCTAGACA---
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCCCAGACACGT---
-----GACACGTGCC
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCCAGACACGT
--BCAGACWA--
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCCAGACACGT
AGCCTCAGGCA---
A C G T A C G T A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCCAGACACGT
TGCCCAGNHW---
A C G T A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCCCAGACACGT-
-----GHCACGTG
A G T C A G T C A G T C A G T C C G T A A C T G C T G A A G T C C G T A A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G