Gene expression matrix dataset of Zeng et al.

H5AD:
2023-05-05-Brain-RIBOmap.h5ad: H5AD file containing the translatomic data of two replicates for RIBOmap
2023-05-05-Brain-combined.h5ad: H5AD file containing the translatomic/transcriptomic data of two replicates for RIBOmap and one replicate for STARmap

Cell culture data:
cell_culture_ribomap_diffmap.csv: Diffusion map embedding of the RIBOmap HeLa FUCCI cell culture data
cell_culture_ribomap_expression_matrix_pp.csv: Preprocessed gene expression matrix of the RIBOmap data
cell_culture_ribomap_expression_matrix_raw.csv: Raw gene expression matrix of the RIBOmap data
cell_culture_ribomap_gene_cluster.csv: Gene cluster labels of RIBOmap
cell_culture_ribomap_metadata.csv: Cell metadata of RIBOmap
cell_culture_starmap_diffmap.csv: Diffusion map embedding of the STARmap HeLa FUCCI cell culture data
cell_culture_starmap_expression_matrix_pp.csv: Preprocessed gene expression matrix of the STARmap data
cell_culture_starmap_expression_matrix_raw.csv: Raw gene expression matrix of the STARmap data
cell_culture_starmap_gene_cluster.csv: Gene cluster labels of STARmap 
cell_culture_starmap_metadata.csv: Cell metadata of STARmap 

Tissue section data:
tissue_expression_matrix_raw.csv.gz: Raw gene expression matrix of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)
tissue_expression_matrix_norm.csv.gz: Normalized gene expression matrix of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)
tissue_expression_matrix_scaled.csv.gz: Scaled gene expression matrix of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)
tissue_expression_matrix_combat.csv.gz: ComBat corrected gene expression matrix of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)

tissue_expression_matrix_raw_ribomap.csv.gz: Raw gene expression matrix of RIBOmap (RIBOmap-rep1, RIBOmap-rep2)
tissue_expression_matrix_norm_ribomap.csv.gz: Normalized gene expression matrix of RIBOmap (RIBOmap-rep1, RIBOmap-rep2)
tissue_expression_matrix_scaled_ribomap.csv.gz: Scaled gene expression matrix of RIBOmap (RIBOmap-rep1, RIBOmap-rep2)

tissue_metadata.csv: Cell metadata matrix of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)
tissue_spatial_RIBOmap_rep1.csv: Spatial information of the RIBOmap-rep1
tissue_spatial_RIBOmap_rep2.csv: Spatial information of the RIBOmap-rep2
tissue_spatial_STARmap_rep2.csv: Spatial information of the STARmap-rep2

tissue_umap_oo.csv: UMAP embedding of the oligodendrocytes and OPCs of RIBOmap data
tissue_umap_ribomap.csv: UMAP embedding of RIBOmap (RIBOmap-rep1, RIBOmap-rep2)
tissue_umap_ribomap_starmap_integration.csv: UMAP embedding of the RIBOmap and STARmap (RIBOmap-rep1, RIBOmap-rep2, STARmap-rep2)