python scripts/pdb_postprocessing.py output_data/models_selected/pkp2a.pdb A 349 output_data/models_selected/pkp2a_modified.pdb 19 output_data/modeller_alignment_files/alignment_MODELLER_pkp2a-1xm9.ali
python scripts/pdb_postprocessing.py output_data/models_selected/pkp3a.pdb A 318 output_data/models_selected/pkp3a_modified.pdb 19 output_data/modeller_alignment_files/alignment_MODELLER_pkp3a-1xm9.ali

python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg3-pg-dsg3.pdb A A:125,B:-421,C:-311,D:-405 output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg1-pg-dsg1.pdb A A:125,B:-421,C:-383,D:-451 output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc3-pg-dsc3.pdb A A:125,B:-421,C:-261,D:-338 output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc1-pg-dsc1.pdb A A:125,B:-421,C:-247,D:-308 output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb
:: Fixing missing-residue numbering for PG chains (A, B). See ReadMe for more details
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb A 659;2;A output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb A 659;2;A output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb A 659;2;A output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb A 659;2;A output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb

python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb A 542;9;B output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb A 657;5;B output_data/models_selected/pg-dsg3-pg-dsg3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb A 542;9;B output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb A 657;5;B output_data/models_selected/pg-dsg1-pg-dsg1_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb A 542;9;B output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb A 657;5;B output_data/models_selected/pg-dsc3-pg-dsc3_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb A 542;9;B output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb
python scripts/pdb_postprocessing.py output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb A 657;5;B output_data/models_selected/pg-dsc1-pg-dsc1_modified.pdb