Preview

MIPT-Oulu-3DHistoGrading-b779a15
- .gitattributes
  
  2.5 kB
- .gitignore
  
  5.7 kB
- 3DHistoGrading
  - 3DHistoGrading.csproj
    
    14.7 kB
  - App.config
    
    323 Bytes
  - Components
    - DataTypes.cs
      
      18.2 kB
    - Functions.cs
      
      54.2 kB
    - Grading.cs
      
      12.4 kB
    - HDF5Loader.cs
      
      1.3 kB
    - Interaction.cs
      
      1.5 kB
    - Interactors.cs
      
      13.6 kB
    - Processing.cs
      
      47.5 kB
    - Rendering.cs
      
      54.5 kB
  - Default
    - calcified_weights.dat
      
      3.1 kB
    - deep_weights.dat
      
      3.1 kB
    - results.csv
      
      1.2 kB
    - sample_features.csv
      
      5.6 kB
    - sample_grades.csv
      
      71 Bytes
    - surface_weights.dat
      
      3.1 kB
    - weights.dat
      
      1.7 kB
    - weights_35.dat
      
      1.4 kB
    - weights_ref.dat
      
      1.4 kB
  - GradingForm.cs
    
    5.0 kB
  - GradingForm.designer.cs
    
    20.2 kB
  - GradingForm.resx
    
    10.4 kB
  - MainForm.Designer.cs
    
    30.7 kB
  - MainForm.cs
    
    26.7 kB
  - MainForm.resx
    
    10.6 kB
  - Models
    - IO.cs
      
      5.6 kB
    - UNet.cs
      
      26.1 kB
  - Program.cs
    
    516 Bytes
  - Properties
    - AssemblyInfo.cs
      
      1.4 kB
    - Resources.Designer.cs
      
      2.8 kB
    - Resources.resx
      
      5.5 kB
    - Settings.Designer.cs
      
      1.1 kB
    - Settings.settings
      
      242 Bytes
  - mipt_icon.ico
    
    2.9 kB
  - packages.config
    
    968 Bytes
- 3DHistoGrading.UnitTests
  - 3DHistoGrading.UnitTests.csproj
    
    13.7 kB
  - FunctionTests
    - ArrayTests.cs
      
      5.3 kB
    - LoadTests.cs
      
      780 Bytes
  - GradingTests
    - LoadModelTests.cs
      
      1.1 kB
    - PredictTests.cs
      
      3.5 kB
    - ProcessingTests.cs
      
      4.5 kB
  - Properties
    - AssemblyInfo.cs
      
      649 Bytes
  - RenderingTests
    - InitializeTests.cs
      
      474 Bytes
  - TestImage.cs
    
    5.2 kB
  - packages.config
    
    1.8 kB
- 3DHistoGrading.sln
  
  3.5 kB
- App_setup
  - App_setup.vdproj
    
    309.9 kB
  - Release
    - App_setup.msi
      
      21.0 MB
    - setup.exe
      
      791.0 kB
- App_setup.msi
  
  21.0 MB
- Default
  - calc_parameters.csv
    
    62 Bytes
  - calc_weights.dat
    
    512 Bytes
  - deep_parameters.csv
    
    63 Bytes
  - deep_weights.dat
    
    644 Bytes
  - errors.txt
    
    394 Bytes
  - surf_parameters.csv
    
    63 Bytes
  - surf_weights.dat
    
    644 Bytes
- FPSuppression
  - FPSuppression
    - App.config
      
      184 Bytes
    - Components
      - DataTypes.cs
        
        11.4 kB
      - Functions.cs
        
        16.9 kB
      - Grading.cs
        
        6.5 kB
      - HDF5Loader.cs
        
        1.3 kB
      - Interaction.cs
        
        1.5 kB
      - Processing.cs
        
        30.7 kB
      - Rendering.cs
        
        24.0 kB
    - FPSuppression.csproj
      
      10.4 kB
    - Models
      - IO.cs
        
        5.0 kB
      - UNet.cs
        
        25.0 kB
    - Program.cs
      
      3.4 kB
    - Properties
      - AssemblyInfo.cs
        
        1.4 kB
    - packages.config
      
      889 Bytes
  - FPSuppression.sln
    
    1.5 kB
- LICENSE
  
  1.1 kB
- OrientSample
  - App.config
    
    184 Bytes
  - Orient.cs
    
    1.9 kB
  - OrientSample.csproj
    
    6.1 kB
  - OrientSample.sln
    
    1.1 kB
  - Program.cs
    
    1.0 kB
  - Properties
    - AssemblyInfo.cs
      
      1.4 kB
  - packages.config
    
    439 Bytes
  - reference.png
    
    595.7 kB
- README.md
  
  3.7 kB
- _config.yml
  
  26 Bytes
- appveyor.yml
  
  948 Bytes
- codecov.yml
  
  212 Bytes
- coverage.xml
  
  8.4 kB
- pictures
  - artefact.PNG
    
    465.0 kB
  - calc_grading.PNG
    
    502.1 kB
  - crop.PNG
    
    315.9 kB
  - deep_grading_parameters_zoom.PNG
    
    797.0 kB
  - examples.md
    
    1.9 kB
  - mipt_icon.ico
    
    2.9 kB
  - rendering.PNG
    
    341.5 kB
  - rendering_mask.PNG
    
    644.2 kB
  - slice.PNG
    
    534.9 kB
  - slice_mask.PNG
    
    213.7 kB
  - slice_oriented.PNG
    
    441.1 kB
  - surf_grading.PNG
    
    500.4 kB
  - vois.PNG
    
    222.5 kB
  - vois_render.PNG
    
    214.0 kB
- setup.exe
  
  791.0 kB
- training
  - .gitignore
    
    1.4 kB
  - LICENSE
    
    1.1 kB
  - README.md
    
    1.5 kB
  - components
    - __init__.py
      
      0 Bytes
    - grading
      - ERCGrades.xlsx
        
        10.5 kB
      - Old
        
        GradDesOrient.py
        
        2.7 kB
        
        ImageProcessing.py
        
        14.9 kB
        
        LBP_components.py
        
        9.4 kB
        
        grading__old.py
        
        13.8 kB
        
        grading_old.py
        
        13.8 kB
      - __init__.py
        
        0 Bytes
      - args_grading.py
        
        8.2 kB
      - grading_pipelines.py
        
        21.1 kB
      - local_binary_pattern.py
        
        19.4 kB
      - pca_regression.ipynb
        
        15.3 kB
      - pca_regression.py
        
        22.8 kB
      - roc_curve.py
        
        11.6 kB
      - torch_regression.py
        
        8.5 kB
    - lbptraining
      - __init__.py
        
        0 Bytes
      - old
        
        Components.py
        
        5.0 kB
        
        LBPEvaluation.ipynb
        
        10.8 kB
        
        LBP_components.py
        
        5.0 kB
      - training_components.py
        
        9.7 kB
    - oldgrading
      - ConvGrade.ipynb
        
        117.6 kB
      - ConvGrade.py
        
        17.3 kB
      - ConvMRELBP.ipynb
        
        20.5 kB
      - ConvMRELBP.py
        
        7.0 kB
      - ImageProcessing.py
        
        14.9 kB
      - ImageProcessing2.py
        
        14.9 kB
      - LBPTest.ipynb
        
        16.2 MB
      - LBPTest.py
        
        19.4 kB
      - PCA_regression.ipynb
        
        81.0 kB
      - PCA_regression.py
        
        9.0 kB
      - PCA_test.ipynb
        
        4.1 kB
      - PCA_test.py
        
        197 Bytes
      - Reference_python.ipynb
        
        129.5 kB
      - Reference_python.py
        
        24.1 kB
      - RegressTest.py
        
        4.6 kB
    - processing
      - __init__.py
        
        0 Bytes
      - args_processing.py
        
        1.7 kB
      - clustering.py
        
        12.4 kB
      - extract_volume.py
        
        9.1 kB
      - rotations.py
        
        9.2 kB
      - segmentation_pipelines.py
        
        15.0 kB
      - voi_extraction_pipelines.py
        
        12.6 kB
    - segmentation
      - __init__.py
        
        0 Bytes
      - torch_model.py
        
        5.0 kB
      - torch_segmentation.py
        
        5.6 kB
      - unet
        
        #loss.py#
        
        1.6 kB
        
        __init__.py
        
        0 Bytes
        
        args.py
        
        1.8 kB
        
        dataset.py
        
        5.3 kB
        
        loss.py
        
        1.6 kB
        
        metrics.py
        
        2.5 kB
        
        model.py
        
        5.0 kB
        
        session.py
        
        7.5 kB
        
        utils.py
        
        3.5 kB
    - utilities
      - VTKFunctions.py
        
        5.3 kB
      - __init__.py
        
        0 Bytes
      - listbox.py
        
        1.9 kB
      - load_write.py
        
        10.9 kB
      - misc.py
        
        20.9 kB
  - documentation
    - flowchart.PNG
      
      634.3 kB
  - notebooks
    - CNTK.ipynb
      
      2.5 kB
    - Conversions.ipynb
      
      3.3 kB
    - CreateMeanStd.ipynb
      
      19.3 MB
    - Debugging.ipynb
      
      580.1 kB
    - Examples and debugging.ipynb
      
      14.4 MB
    - GradDesOrient.ipynb
      
      68.4 kB
    - LBP features old.ipynb
      
      70.0 kB
    - LBP features.ipynb
      
      6.8 MB
    - LBPEvaluation.ipynb
      
      44.5 kB
    - LoopExample.ipynb
      
      8.4 kB
    - New_Weight_Optimization.ipynb
      
      364.1 kB
    - PCAOrient.ipynb
      
      53.1 kB
    - Segmentation.ipynb
      
      5.7 kB
    - WeightCheck.ipynb
      
      2.4 kB
    - large_sample.ipynb
      
      6.4 MB
  - requirements.txt
    
    263 Bytes
  - run_full.sh
    
    2.3 kB
  - run_grading.sh
    
    1.6 kB
  - run_images.sh
    
    1.3 kB
  - scripts
    - __init__.py
      
      0 Bytes
    - run_combine_subimages.py
      
      3.9 kB
    - run_display_meanstd.py
      
      2.5 kB
    - run_full.py
      
      3.7 kB
    - run_grading.py
      
      7.0 kB
    - run_images.py
      
      4.9 kB
    - run_kmean_scikit.py
      
      2.6 kB
    - run_kmeans.py
      
      2.1 kB
    - run_lbp_features.py
      
      5.5 kB
    - run_lbp_features_vois.py
      
      924 Bytes
    - run_lbp_training.py
      
      4.3 kB
    - run_lbp_training_hyperopt.py
      
      6.0 kB
    - run_mean_std.py
      
      3.4 kB
    - run_noise_estimate.py
      
      10.6 kB
    - run_pca_regression.py
      
      5.7 kB
    - run_subimages.py
      
      2.2 kB
    - run_subvolume.py
      
      2.4 kB
  - setup.py
    
    368 Bytes

MIPT-Oulu/3DHistoGrading-v1.0.0.zip