Liste of variable for ANSES_Metadata_DRYAD.csv;variable_type;units;Description 
id_sequence;categorical;NA;Sequence ID
ANSES_sample_N;categorical;NA;Sample ID
Sample_type;categorical;NA;Sample type (feces, ileum, cecum contents)
PIG_location;categorical;NA;Pig location in expermimental installation
Sex;categorical;NA;Sex of animal
CFU;numeric;cfu/g;Colony forming Unit
Shedding_class;categorical;NA;Shedding class obtain after hierachical analysis
Sampling_Date;categorical;NA;Date of sampling
Pig_Number;categorical;NA;animal ID 
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Liste of variable for Cytokines DRYAD.csv;variable_type;units;
CLASS;categorical;NA;Shedding class obtain after hierachical analysis
Il1beta-D1;numeric;pg/ml;Quantification of Interleukine 1 beta, 1 day after inoculation
Il1beta-BD3;numeric;pg/ml;Quantification of Interleukine 1 beta, 3 days after inoculation
Il1beta-D7;numeric;pg/ml;Quantification of Interleukine 1 beta, 7 days after inoculation
Il1beta-D10;numeric;pg/ml;Quantification of Interleukine 1 beta, 10 days after inoculation
INFgamma-D1;numeric;pg/ml;Quantification of Interferon gamma, 1 day after inoculation
INFgamma-D3;numeric;pg/ml;Quantification of Interferon gamma, 3 days after inoculation
IL6-D1;numeric;pg/ml;Quantification of Interleukine 6, 1 day after inoculation
IL6-D3;numeric;pg/ml;Quantification of Interleukine 6, 3 days after inoculation
IL6-D7;numeric;pg/ml;Quantification of Interleukine 6, 7 days after inoculation
IL6-D10;numeric;pg/ml;Quantification of Interleukine 6, 10 days after inoculation
TNFalpha-D1;numeric;pg/ml;Quantification of TNFalpha 1 day after inoculation
TNFalpha-D3;numeric;pg/ml;Quantification of TNFalpha 3 days after inoculation
TNFalpha-D7;numeric;pg/ml;Quantification of TNFalpha 7 days after inoculation
TNFalpha-D10;numeric;pg/ml;Quantification of TNFalpha 10 days after inoculation
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Liste of variable Serology DRYAD.csv;variable_type;units;
CLASS;categorical;NA;Shedding class obtain after hierachical analysis
PIG_location;categorical;NA;Pig location in expermimental installation
Pig_Number;categorical;NA;animal ID 
D-7;numeric; %OD;Seven day before inoculation
D0;numeric; %OD;Day 0 = day of inoculation
D1;numeric; %OD;Day 1 = One day after inoculation
D3;numeric; %OD;Day 3 = Three days after inoculation
D7;numeric; %OD;Day 7 = Seven days after inoculation
D10;numeric; %OD;Day 10 = Ten days after inoculation
D14;numeric; %OD;Day 14 = Forteen days after inoculation
D17;numeric; %OD;Day 17 = Seventeen days after inoculation
D21;numeric; %OD;Day 21 = Twenty-One days after inoculation