evidence_modeler.pl --genome [a genome sequence (a contig) in FASTA] --weights ./weights.txt --gene_predictions [gene structures obtained through GINGER ab initio-based methods (Augustus and SNAP) in GFF] --protein_alignments [protein algignments obtained through GINGER homology-based methods in GFF] --transcript_alignments [transcripot algignments obtained through GINGER de novo assembly-based methods in GFF ] > [EVM outputs]
EVM_to_GFF3.pl [EVM outputs] [contig accession] > [EVM outputs in GFF]