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phylosamp
1.0.1
Reference
Vignettes
Transmission Linkage
Estimating the linkage false discovery rate
Sample size calculations for transmission linkage
Estimating sensitivity and specificity of a linkage criteria
Illustrative Examples
Variant Tracking
Estimating bias in observed variant prevalence
Sample size calculations for variant tracking (cross-sectional sampling)
Probability of detection and prevalence estimation (cross-sectional sampling)
Sample size calculations for variant tracking (periodic sampling)
Probability of detection (periodic sampling)
Variant Surveillance Example
Changelog
Articles
All vignettes
Estimating the linkage false discovery rate from sample size
Estimating sample size for transmission linkage from the false discovery rate
Estimating the sensitivity and specificity of a linkage criteria
Illustrative examples for evaluating transmission linkage
Estimating bias in observed variant prevalence
Estimating the sample size needed for variant monitoring
Estimating the probability of detecting a variant
Estimating the sample size needed for variant monitoring
Estimating the probability of detecting a variant
Variant surveillance example