phylosamp 1.0.1
  • Reference
  • Vignettes
    • Transmission Linkage
    • Estimating the linkage false discovery rate
    • Sample size calculations for transmission linkage
    • Estimating sensitivity and specificity of a linkage criteria
    • Illustrative Examples
    • Variant Tracking
    • Estimating bias in observed variant prevalence
    • Sample size calculations for variant tracking (cross-sectional sampling)
    • Probability of detection and prevalence estimation (cross-sectional sampling)
    • Sample size calculations for variant tracking (periodic sampling)
    • Probability of detection (periodic sampling)
    • Variant Surveillance Example
  • Changelog

Articles

All vignettes

Estimating the linkage false discovery rate from sample size
Estimating sample size for transmission linkage from the false discovery rate
Estimating the sensitivity and specificity of a linkage criteria
Illustrative examples for evaluating transmission linkage
Estimating bias in observed variant prevalence
Estimating the sample size needed for variant monitoring
Estimating the probability of detecting a variant
Estimating the sample size needed for variant monitoring
Estimating the probability of detecting a variant
Variant surveillance example

Developed by Shirlee Wohl, Elizabeth C Lee, Lucy D’Agostino McGowan, John R Giles, Justin Lessler.

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