biosimulations/biosimulations-v9.26.3.zip
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biosimulations-biosimulations-783de7e
.all-contributorsrc
30.4 kB
.devcontainer
Dockerfile
482 Bytes
devcontainer.json
1.3 kB
docker-compose.yml
710 Bytes
.dockerignore
133 Bytes
.editorconfig
245 Bytes
.eslintrc.json
2.8 kB
.flake8
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.github
ISSUE_TEMPLATE
BugReport.yml
2.5 kB
config.yml
863 Bytes
actions
check-example-simulation-runs-succeeded
issue-template.md
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spelling
README.md
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advice.md
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allow.txt
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excludes.txt
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expect.txt
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only.txt
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patterns.txt
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reject.txt
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autolabeler.yml
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config.yml
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pull_request_template.md
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workflows
assignToProject.yml
678 Bytes
buildLintTest.yml
5.6 kB
buildSitemaps.yml
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cancel-pr-close.yml
532 Bytes
cancel.yml
434 Bytes
cd.yml
1.1 kB
checkExampleSimulationRunsSucceeded.yml
1.9 kB
ci.yml
480 Bytes
closeStaleTodos.yml
946 Bytes
codeql-analysis.yml
2.5 kB
dependencyLicense.yml
1.9 kB
deploy.yml
8.1 kB
docker.yml
3.5 kB
docs.yml
1.0 kB
format.yml
1.8 kB
generateCombineApiClient.yml
2.1 kB
monitor-todos.yml
397 Bytes
ossar-analysis.yml
1.6 kB
release.yml
1.9 kB
semantic-commits.yml
698 Bytes
spelling.yml
895 Bytes
testSimulationsWorking.yaml
1.1 kB
updateLicenseYear.yml
480 Bytes
updateOntologies.yml
1.8 kB
validateOpenApiSpecs.yml
1.5 kB
.gitignore
1.7 kB
.husky
.gitignore
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commit-msg
82 Bytes
pre-commit
60 Bytes
prepare-commit-msg
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.lintstagedrc
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.prettierignore
221 Bytes
.prettierrc
116 Bytes
.releaserc
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.run
api_serve.run.xml
335 Bytes
.scully
settings.yml
54 Bytes
.vscode
extensions.json
424 Bytes
CITATION.cff
5.3 kB
Dockerfile
2.4 kB
License.md
1.1 kB
README.md
41.7 kB
apps
account
.eslintrc
1.0 kB
jest.config.ts
696 Bytes
project.json
3.6 kB
proxy.conf.json
87 Bytes
src
app
app.component.html
149 Bytes
app.component.scss
41 Bytes
app.component.spec.ts
808 Bytes
app.component.ts
426 Bytes
app.module.ts
1.3 kB
components
agreement
agreement.component.html
422 Bytes
agreement.component.scss
85 Bytes
agreement.component.spec.ts
2.7 kB
agreement.component.ts
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registration
registration.component.html
3.3 kB
registration.component.sass
220 Bytes
registration.component.spec.ts
180 Bytes
registration.component.ts
3.3 kB
registration.module.ts
1.6 kB
registration.service.spec.ts
611 Bytes
registration.service.ts
1.3 kB
assets
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environments
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116 Bytes
environment.ts
730 Bytes
favicon.ico
15.1 kB
index.html
343 Bytes
main.ts
386 Bytes
polyfills.ts
2.3 kB
styles.scss
80 Bytes
test-setup.ts
41 Bytes
tsconfig.app.json
448 Bytes
tsconfig.json
248 Bytes
tsconfig.spec.json
302 Bytes
account-e2e
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297 Bytes
cypress.json
414 Bytes
project.json
758 Bytes
src
fixtures
example.json
80 Bytes
integration
app.spec.ts
406 Bytes
plugins
index.js
774 Bytes
support
app.po.ts
47 Bytes
commands.ts
1.1 kB
index.ts
599 Bytes
tsconfig.e2e.json
222 Bytes
tsconfig.json
147 Bytes
api
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234 Bytes
jest.config.ts
187 Bytes
project.json
2.8 kB
src
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.gitkeep
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app.controller.spec.ts
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app.controller.ts
394 Bytes
app.module.ts
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assets
.gitkeep
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fixtures
simulations
f1a516db-fa6b-4afb-93bd-e951b539f54f
out
det_7_RKF
job.error
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job.output
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task1.csv
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task1.json
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task1_chart.json
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environments
environment.prod.ts
52 Bytes
environment.ts
53 Bytes
files
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files.controller.ts
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files.model.ts
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files.module.ts
575 Bytes
files.service.spec.ts
998 Bytes
files.service.ts
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health
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health.controller.spec.ts
868 Bytes
health.controller.ts
4.1 kB
health.module.ts
712 Bytes
images
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321 Bytes
images.controller.spec.ts
874 Bytes
images.controller.ts
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images.module.ts
487 Bytes
logs
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logs.controller.ts
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logs.model.ts
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logs.module.ts
800 Bytes
logs.service.spec.ts
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logs.service.ts
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main.ts
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metadata
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metadata.controller.ts
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metadata.model.ts
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metadata.module.ts
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metadata.service.spec.ts
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metadata.service.ts
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openApi.ts
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projects
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id.regex.ts
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id.reservedIds.ts
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project.model.ts
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projects.controller.spec.ts
950 Bytes
projects.controller.ts
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projects.filter.spec.ts
8.1 kB
projects.filter.ts
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projects.mock.ts
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projects.module.ts
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projects.search.spec.ts
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projects.search.ts
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projects.service.spec.ts
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projects.service.ts
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results
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923 Bytes
results.controller.spec.ts
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results.controller.ts
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results.module.ts
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results.service.spec.ts
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results.service.ts
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simulation-run
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simulation-run-validation.service.ts
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simulation-run.controller.spec.ts
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simulation-run.controller.ts
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simulation-run.model.ts
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simulation-run.module.ts
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simulation-run.service.spec.ts
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simulation-run.service.ts
29.3 kB
specifications
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specifications.controller.ts
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specifications.model.ts
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specifications.module.ts
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specifications.service.spec.ts
762 Bytes
specifications.service.ts
3.8 kB
tsconfig.app.json
326 Bytes
tsconfig.json
197 Bytes
tsconfig.spec.json
275 Bytes
combine-api
Dockerfile
10.6 kB
Dockerfile-assets
.pys_usercfg.ini
129 Bytes
Pipfile
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Pipfile.lock
172.2 kB
xvfb-startup.sh
333 Bytes
README.md
9.0 kB
combine_api
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671 Bytes
__main__.py
40 Bytes
app.py
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app_config.py
325 Bytes
exceptions.py
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handlers
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0 Bytes
combine
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add_file.py
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create.py
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get_file.py
2.3 kB
get_manifest.py
3.9 kB
get_metadata_for_combine_archive.py
8.0 kB
get_sedml_specs_for_combine_archive.py
20.1 kB
modify.py
7.5 kB
utils.py
18.2 kB
validate.py
4.8 kB
health.py
176 Bytes
kisao
__init__.py
0 Bytes
get_similar_algorithms.py
3.2 kB
model
__init__.py
0 Bytes
validate.py
3.0 kB
omex_metadata
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validate.py
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run
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get_simulators.py
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run.py
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simulators.yml
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utils.py
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sed_ml
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0 Bytes
get_parameters_variables_for_simulation.py
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validate.py
2.3 kB
s3.py
8.3 kB
spec
spec.yml
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utils.py
4.2 kB
mypy.ini
155 Bytes
poetry.lock
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project.json
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pyproject.toml
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pytest.ini
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run-tests-in-docker-container.sh
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tests
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test_add_file_to_combine_archive.py
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test_create_combine_archive.py
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test_get_combine_archive_manifest.py
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test_get_file_from_combine_archive.py
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test_get_metadata_from_combine_archive.py
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test_get_sedml_specs_for_combine_archive.py
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test_modify_combine_archive.py
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test_validate_combine_archive.py
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fixtures
Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations.omex
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Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations.sed-specs.json
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Chaouiya-BMC-Syst-Biol-2013-EGF-TNFa-signaling.xml
42.3 kB
Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous-no-changes.omex
91.1 kB
Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous-no-changes.sedml
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Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.md.json
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Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.omex
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Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.rdf
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Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.sedml
13.5 kB
archive-specs.json
7.2 kB
bad-manifest.omex
6.2 kB
env.py
238 Bytes
file.txt
12 Bytes
invalid-SED-ML.omex
10.3 kB
invalid-metadata.omex
91.0 kB
model.xml
559 Bytes
no-manifest.omex
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wilson-cowan.ode
311 Bytes
kisao_test
__init__.py
0 Bytes
test_get_similar_algorithms.py
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model
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test_model_validate.py
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omex_metadata
__init__.py
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test_omex_metadata_validate.py
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run
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0 Bytes
test_run_get_simulators.py
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test_run_run.py
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test_run_utils.py
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sed_ml
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0 Bytes
test_sed_ml_get_variables_parameters.py
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test_sed_ml_validate.py
5.5 kB
test_app.py
1.1 kB
test_health.py
398 Bytes
test_s3.py
9.2 kB
test_swagger_app.py
662 Bytes
test_utils.py
440 Bytes
vendor
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229 Bytes
favicon-16x16.png
665 Bytes
favicon-32x32.png
628 Bytes
index.html
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index.j2
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oauth2-redirect.html
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swagger-ui-bundle.js
2.1 MB
swagger-ui-bundle.js.map
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swagger-ui-es-bundle-core.js
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swagger-ui-es-bundle-core.js.map
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swagger-ui-es-bundle.js
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swagger-ui-es-bundle.js.map
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swagger-ui-standalone-preset.js
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swagger-ui-standalone-preset.js.map
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swagger-ui.css
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swagger-ui.css.map
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swagger-ui.js
1.1 MB
swagger-ui.js.map
1.9 MB
dispatch
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jest.config.ts
721 Bytes
ngsw-config.json
570 Bytes
project.json
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proxy.conf.json
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routes.txt
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src
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app.component.scss
0 Bytes
app.component.spec.ts
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app.component.ts
967 Bytes
app.module.ts
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components
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home.component.ts
324 Bytes
run
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dispatch.component.scss
250 Bytes
dispatch.component.spec.ts
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dispatch.component.ts
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run-routing.module.ts
372 Bytes
run.module.ts
942 Bytes
simulations
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browse.component.scss
0 Bytes
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browse.component.ts
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delete-simulations-dialog.component.html
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delete-simulations-dialog.component.scss
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simulations.module.ts
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view
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overview.component.spec.ts
752 Bytes
overview.component.ts
378 Bytes
simulation-log
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simulation-log.component.ts
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simulation-log.module.ts
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structured-simulation-log-element.component.html
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structured-simulation-log-element.component.scss
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utils
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utils.module.ts
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datamodel.ts
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services
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combine-api.service.ts
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dispatch
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dispatch.service.ts
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simulation
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simulation.service.spec.ts
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simulation.service.ts
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simulation-logs-datamodel.ts
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assets
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scully-routes.json
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browserconfig.xml
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index.html
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main.ts
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manifest.webmanifest
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polyfills.ts
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sitemap.xml
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styles.scss
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test-setup.ts
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tsconfig.json
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tsconfig.spec.json
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dispatch-e2e
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cypress.json
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project.json
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src
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integration
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883 Bytes
plugins
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support
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commands.ts
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index.ts
599 Bytes
tsconfig.e2e.json
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tsconfig.json
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dispatch-service
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src
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archiver.service.ts
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log.service.ts
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services
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hpc.service.ts
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sbatch
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sbatch.service.ts
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simulationStatus.service.ts
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ssh
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ssh.service.ts
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complete.processor.ts
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dispatch.processor.ts
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files.proccessor.ts
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log.processor.ts
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logPost.processor.ts
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manifest.processor.ts
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metadata.processor.ts
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metadataPost.processor.ts
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monitor.processor.ts
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output.processor.ts
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process.processor.ts
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publish.processor.ts
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resolveCombineArchive.processor.ts
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sedML.processor.ts
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sedmlPost.processor.ts
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submit.processor.ts
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thumbnails.proccessor.ts
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thumbnailsPost.processor.ts
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assets
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combineWrapper.service.ts
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environments
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environment.ts
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file
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file.service.ts
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images
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images.controller.ts
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images.module.ts
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images.service.spec.ts
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images.service.ts
90 Bytes
refresh.processor.ts
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main.ts
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manifest
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manifest.service.ts
980 Bytes
metadata
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metadata.service.ts
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sedml
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sedml.service.ts
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thumbnail
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thumbnail.service.ts
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tsconfig.app.json
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tsconfig.json
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tsconfig.spec.json
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mail-service
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app.service.ts
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environments
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environment.ts
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main.ts
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tsconfig.app.json
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tsconfig.json
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tsconfig.spec.json
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platform
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jest.config.ts
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ngsw-config.json
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project.json
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routes.txt
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src
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app.component.spec.ts
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app.component.ts
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app.module.ts
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components
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featured.component.scss
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featured.component.spec.ts
882 Bytes
featured.component.ts
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featured.model.ts
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featured.service.ts
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home-routing.module.ts
351 Bytes
home.component.html
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home.component.scss
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home.component.spec.ts
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home.component.ts
324 Bytes
home.module.ts
729 Bytes
projects
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476 Bytes
browse.service.ts
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project-table.component.html
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project-table.component.ts
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projects-chips
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projects-chips.component.scss
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projects-chips.component.spec.ts
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projects-chips.component.ts
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projects.module.ts
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view
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dispatch.component.ts
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run.module.ts
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simulations
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browse.component.scss
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browse.component.ts
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delete-simulations-dialog.component.spec.ts
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delete-simulations-dialog.component.ts
570 Bytes
example-simulations.dev.json
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example-simulations.prod.json
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publish
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publish.component.scss
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simulations.module.ts
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view
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overview.component.scss
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overview.component.spec.ts
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overview.component.ts
378 Bytes
simulation-log
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