Preview

cdanielmachado-reframed-8f0cf79
- .gitignore
  
  261 Bytes
- .readthedocs.yml
  
  249 Bytes
- .travis.yml
  
  83 Bytes
- LICENSE
  
  586 Bytes
- MANIFEST.in
  
  242 Bytes
- Makefile
  
  2.3 kB
- README.md
  
  2.5 kB
- README.rst
  
  4.1 kB
- docs
  - Makefile
    
    609 Bytes
  - basics.rst
    
    2.4 kB
  - conf.py
    
    4.9 kB
  - index.rst
    
    680 Bytes
  - installation.rst
    
    733 Bytes
  - interfaces.rst
    
    1.5 kB
  - make.bat
    
    770 Bytes
  - modules.rst
    
    61 Bytes
  - reframed.cobra.rst
    
    1.4 kB
  - reframed.community.rst
    
    720 Bytes
  - reframed.core.rst
    
    1.1 kB
  - reframed.external.rst
    
    532 Bytes
  - reframed.io.rst
    
    466 Bytes
  - reframed.rst
    
    309 Bytes
  - reframed.solvers.rst
    
    1.1 kB
  - simulation.rst
    
    2.5 kB
- reframed
  - __init__.py
    
    1.2 kB
  - alpha
    - __init__.py
      
      0 Bytes
    - fluxutils.py
      
      1.7 kB
    - gapMake.py
      
      2.7 kB
    - geneswitch.py
      
      5.5 kB
    - plotting.py
      
      2.8 kB
    - sampling.py
      
      3.1 kB
  - cobra
    - __init__.py
      
      0 Bytes
    - auxotrophy.py
      
      1.1 kB
    - ensemble.py
      
      4.7 kB
    - knockout.py
      
      6.5 kB
    - medium.py
      
      8.5 kB
    - plotting.py
      
      3.7 kB
    - simulation.py
      
      15.5 kB
    - thermodynamics.py
      
      15.7 kB
    - transcriptomics.py
      
      13.0 kB
    - variability.py
      
      3.6 kB
  - community
    - SteadyCom.py
      
      5.6 kB
    - __init__.py
      
      0 Bytes
    - model.py
      
      5.3 kB
    - simulation.py
      
      8.4 kB
    - simulation_old.py
      
      12.0 kB
    - solution.py
      
      7.0 kB
  - core
    - __init__.py
      
      0 Bytes
    - cbmodel.py
      
      13.1 kB
    - elements.py
      
      2.7 kB
    - environment.py
      
      6.9 kB
    - model.py
      
      19.3 kB
    - parser.py
      
      3.2 kB
    - transformation.py
      
      13.4 kB
  - external
    - __init__.py
      
      0 Bytes
    - cobrapy.py
      
      2.7 kB
    - escher.py
      
      1.4 kB
  - io
    - __init__.py
      
      0 Bytes
    - cache.py
      
      1.2 kB
    - sbml.py
      
      27.8 kB
  - solvers
    - __init__.py
      
      2.0 kB
    - cplex_solver.py
      
      19.0 kB
    - gurobi_solver.py
      
      12.5 kB
    - optlang_solver.py
      
      10.5 kB
    - pulp_solver.py
      
      10.2 kB
    - solution.py
      
      7.1 kB
    - solver.py
      
      7.1 kB
- reframed_logo.png
  
  23.9 kB
- requirements.txt
  
  33 Bytes
- setup.cfg
  
  31 Bytes
- setup.py
  
  1.3 kB
- tests
  - __init__.py
    
    63 Bytes
  - data
    - e_coli_core.xml.gz
      
      40.2 kB
    - iML1515.xml.gz
      
      470.6 kB
    - model_cobra.xml.gz
      
      5.4 kB
    - model_fbc2.xml.gz
      
      5.9 kB
  - test_reframed.py
    
    5.2 kB
- tox.ini
  
  136 Bytes

cdanielmachado/reframed-1.4.0.zip