Export to GNPS GC-MS (with ADAP)
Description
The GNPS GC-MS module exports all files needed for the GC-MS workflow on the GNPS web-platform.
This includes the feature quantification table (CSV file) and the spectral summary (.MGF file) with representative clustered GC-EI-MS spectra for the row in an (aligned) feature list.
Instructions
Run this method on any (aligned) feature List. One of the spectral deconvolution methods need to be run (refer to the ADAP manual).
Parameters
- Filename
- Base name for the output files
- Representative m/z
- The m/z value that is exported to the mgf and used in GNPS GC-MS (Options: As in feature table, highest m/z, heighest intensity)
- Open folder
- Opens the folder containing the output files
Documentation
Please refer to the following documentation for a detailed tutorial:
- If you use the GNPS GC-MS export please cite:
- See the documentation about GC-MS within GNPS or GNPS on how to perform molecular networking, MS/MS spectral library search, and benefit from other tools available in GNPS environment.
- Or check out the youtube playlist on GNPS GC-MS (and MZmine) related videos