{
    "schema-version": "0.5",
    "name": "FreeSurfer7-mri_glmfit-sim",
    "container-image": {
        "index": "docker://",
        "image": "ansokol/freesurfer_7.3.2",
        "type": "singularity"
    },
    "tool-version": "v7.3.2",
    "command-line": "export SUBJECTS_DIR=`pwd`; export FS_LICENSE=`pwd`/[LICENSE_FILE]; mri_glmfit-sim --glmdir [DIR] --cache [CACHE_abs] abs --cwp [CWP] --2spaces",
    "author": "Laboratory for Computational Neuroimaging ",
    "error-codes": [
        {
            "description": "Crashed",
            "code": 1
        }
    ],
    "inputs": [
        {
            "name": "License file",
            "value-key": "[LICENSE_FILE]",
            "optional": false,
            "description": "Valid license file needed to run FreeSurfer.",
            "id": "license",
            "type": "File"
        },
        {
            "name": "glm_dir",
            "id": "dir",
            "optional": false,
            "value-key": "[DIR]",
            "description": "glm directory",
            "type": "String"
        },
        {
            "name": "CACHE_abs",
            "id": "CACHE_abs",
            "optional": false,
            "value-key": "[CACHE_abs]",
            "description": "vertex-wise cluster threshold for both contrasts",
            "type": "String"
        },
        {
            "name": "cwp",
            "id": "cwp",
            "optional": false,
            "value-key": "[CWP]",
            "description": "cluster-wise p-threshold",
            "type": "String"
        }
    ],
    "custom": {
        "cbrain:author": "Andrzej Sokolowski <andrzej.sokolowski@concordia.ca>",
        "cbrain:readonly-input-files": true
    },
    "description": "Performs general linear model (GLM) analysis in the volume or the surface with correction for multiple comparisons (https://surfer.nmr.mgh.harvard.edu/fswiki/mri_glmfit)."
}