R/plot_dotviolin_sc.R
plot_dotviolin_sc.Rd
This function is related to plot_dotviolin
, but this one maps a single or same colour, therefore _sc
.
The only new argument is colour
, which can be any hexcode or name of colours in the all_grafify
palette.
The default colour is ok_orange
. ColPal
and ColRev
arguments are not available. Colours available can be seen quickly with plot_grafify_palette
.
plot_dotviolin_sc(
data,
xcol,
ycol,
colour = "ok_orange",
dotsize = 1.5,
dotthick = 1,
bvthick = 1,
bwid = 0.2,
b_alpha = 0,
d_alpha = 1,
v_alpha = 1,
trim = TRUE,
scale = "width",
TextXAngle = 0,
fontsize = 20,
...
)
a data table object, e.g. data.frame or tibble.
name of the column to plot on X axis. This should be a categorical variable.
name of the column to plot on quantitative Y axis. This should be a quantitative variable.
colour of boxes and dots; a number between 1-64, any hexcode or names from grafify
colour palettes. Default is ok_orange
.
size of dots relative to binwidth
used by geom_dotplot
. Default set to 1.5, increase/decrease as needed.
thickness of dot border (stroke
parameter of geom_dotplot
), default set to 1.
thickness of violin an boxplot lines; default 1.
width of boxplots; default 0.2
fractional opacity of boxplots. Default is set to 0, which results in white boxes inside violins. Change to any value >0 up to 1 for different levels of transparency.
fractional opacity of dots, default set to 1 (i.e. maximum opacity & zero transparency).
fractional opacity of violins, default set to 1 (i.e. maximum opacity & zero transparency)
set whether tips of violin plot should be trimmed at high/low data. Default trim = T
, can be changed to F.
set to "area" by default, can be changed to "count" or "width".
orientation of text on X-axis; default 0 degrees. Change to 45 or 90 to remove overlapping text.
parameter of base_size
of fonts in theme_classic
, default set to size 20.
any additional arguments to pass to ggplot2
geom_boxplot, ggplot2
geom_dotplot or ggplot2
geom_violin.
This function returns a ggplot2
object of class "gg" and "ggplot".
#plot with trim = FALSE
plot_dotviolin_sc(data = data_1w_death,
xcol = Genotype, ycol = Death,
scale = "width", trim = FALSE)
#> Bin width defaults to 1/30 of the range of the data. Pick better value with `binwidth`.
plot_dotviolin_sc(data = data_1w_death,
xcol = Genotype, ycol = Death, colour = "light_orange",
scale = "width", trim = FALSE, b_alpha = 0.5)
#> Bin width defaults to 1/30 of the range of the data. Pick better value with `binwidth`.