index,code,used ,meaning,represents 1,NR,colomns,Index numer,Following number 2,BlOCK,colomns,Block number,8 blocks 3,TREAT,colomns,Treatment ,"X=X-Treck, H=HatchCare, C=Conventional" 4,DAY,colomns,Day number,number of days after hatching 5,DATE,colomns,Date ,Date of the measurement 6,PEN,colomns,Pen number,24 pens 7,SEX,colomns,Gender of animal,"M=male, F=female" 8,ANNR,colomns,Animal number,1 or 2 9,BW,"colomns, filename",Body weight,body weight of an animal on a certain day in grams 10,FCR07,colomns,Feed conversion ratio ,Feed conversion ration day 0 till day 7 11,FCR714,colomns,Feed conversion ratio ,Feed conversion ration day 7 till day 14 12,FCR1421,colomns,Feed conversion ratio ,Feed conversion ration day 14 till day 21 13,FCR2128,colomns,Feed conversion ratio ,Feed conversion ration day 21 till day 28 14,FCR2835,colomns,Feed conversion ratio ,Feed conversion ration day 28 till day 35 15,FCR035,colomns,Feed conversion ratio ,Feed conversion ration day 0 till day 35 16,m_infl,colomns,Histology,mean inflammatory cells 17,m_epi,colomns,Histology,mean epithelial degeneration 18,sum_m_inflepi,colomns,Histology,sum of mean inflammatory cells + epithelial degeneration 19,sum_infl,colomns,Histology,sum inflammatory cells 20,sum_epi,colomns,Histology,sum epithelial degeneration 21,infl1,colomns,Histology,measurement 1 inflammatory cells 22,infl2,colomns,Histology,measurement 2 inflammatory cells 23,infl3,colomns,Histology,measurement 3 inflammatory cells 24,epi1,colomns,Histology,measurement 1 epithelial degeneration 25,epi2,colomns,Histology,measurement 2 epithelial degeneration 26,epi3,colomns,Histology,measurement 3 epithelial degeneration 27,HATCHED,colomns,Hatched chickens,number of hatched chickens 28,2NDGRADE,colomns,2nd grade chickens,number of 2nd grade chickens 29,STARTNUM,colomns,Number of chickens,Number of chickens per pen at start experiment 30,P2NDGRADE,colomns,% 2nd grade chickens,Percentage of 2nd grade chickens 31,selwk,colomns,Selection per week,"number of chickens that were selected to take out of the experiment, per week. Week numbers are 1 - 6" 32,deadwk,colomns,Dead per week,"number of chickens that died, per week. Week numbers are 1 - 6" 33,mortwk,colomns,Mortality per week,mortality per week = number of selected chickens + dead per week. Week numbers 1 - 6 34,pselwk,colomns,% Selected chickens,"Percentage of selected chickens, per week. Week number are 1 - 6" 35,pmortwk,colomns,% Mortality per week,"Percentage of mortality, per week. Weekunmber are 1 - 6" 36,TOTSEL,colomns,Total selection,Total number of chickens selected to take out of the experiment 37,TOTDEAD,colomns,Total dead,Total number of chick that died in the experiment 38,TOTMORT,colomns,Total mortality,Total mortality = total number of selected chickens + total number of chickens that died 39,PTOTSEL,colomns,% Total selection,Percentage of total number of chickens selected to take out of the experiment 40,PTOTDEAD,colomns,% Total dead,Percentage of total number of chickens that died in the experiment 41,PTOTMORT,colomns,% Total mortality,Percentage of total mortality = Percentage of total number of chickens selected to take out of the experiment + Percentage of total number of chickens that died in the experiment 42,OD,colomns,NCD titer,optic density 43,SP200,colomns,NCD titer,Sample positive at a dilutation of 200 (SP = (Sample mean – Negative Control)/(Positive control – Negative control) 44,SP500,colomns,NCD titer,Sample positive at a dilutation of 500 (SP = (Sample mean – Negative Control)/(Positive control – Negative control) 45,logTiter500,colomns,NCD titer,1.09 (log10* SP500) + 3.36 (according to guidelines kit) 46,Titer500,colomns,NCD titer,10^logtiter500 47,BWgain07,colomns,Body weight gain,Body weight gain day 0 till day 7 48,BWgain714,colomns,Body weight gain,Body weight gain day 7 till day 14 49,BWgain1421,colomns,Body weight gain,Body weight gain day 14 till day 21 50,BWgain2128,colomns,Body weight gain,Body weight gain day 21 till day 28 51,BWgain2835,colomns,Body weight gain,Body weight gain day 28 till day 35 52,fge_claudin,colomns,Gene expression,fold change gene expression claudin 53,fge_occl,colomns,Gene expression,fold change gene expression occludin 54,fge_il8,colomns,Gene expression,fold change gene expression IL-8 55,fge_il10,colomns,Gene expression,fold change gene expression IL-10 56,fge_NFKB,colomns,Gene expression,fold change gene expression NFkB 57,fge_IFNG,colomns,Gene expression,fold change gene expression IFN-gamma 58,ratio_claudin,colomns,Gene expression,Ratio between relative gene expression and average gene expression of claudin 59,ratio_occl,colomns,Gene expression,Ratio between relative gene expression and average gene expression of occludin 60,ratio_il8,colomns,Gene expression,Ratio between relative gene expression and average gene expression of IL-8 61,ratio_il10,colomns,Gene expression,Ratio between relative gene expression and average gene expression of IL-10 62,ratio_NFkB,colomns,Gene expression,Ratio between relative gene expression and average gene expression of NFkB 63,ratio_IFNG,colomns,Gene expression,Ratio between relative gene expression and average gene expression of IFN-gamma 64,re_claudin,colomns,Gene expression,Relative gene expression claudin 65,re_occl,colomns,Gene expression,Relative gene expression occludin 66,re_il8,colomns,Gene expression,Relative gene expression IL-8 67,re_il10,colomns,Gene expression,Relative gene expression IL-10 68,re_NFKB,colomns,Gene expression,Relative gene expression NFkB 69,re_IFNG,colomns,Gene expression,Relative gene expression IFN-gamma 70,logfc_IFNG,colomns,Gene expression,log ratio_IFNG 71,CHICK,colomns,Chicken number,Following number 72,CLEAN,colomns,Chicken welfare characteristics,"Cleaniness of the down, score 0 (clean) to 3 (very dirty)" 73,FPD,colomns,Chicken welfare characteristics,"Foodpad dermatitis score, score 0 (no lesions) to 4 (ulcers)" 74,HOCK,colomns,Chicken welfare characteristics,"Hock burn score, scor 0 (no lesions) to 4 (brown or black discoloration)" 75,SKIN,colomns,Chicken welfare characteristics,"Skin lesion score, score 0 (no lesions) to 2 (at least 1 lesion > 2 cm diameter)" 76,GAIT,colomns,Chicken welfare characteristics,"Gait score, score 0 (normal gait) to 5 (incapable of walking)" 77,LITTER,colomns,Chicken welfare characteristics,"Litter quality score, score 0 (completely dry and loose) to 4 (very wet or completely capped wiht a crust)" 78,TIME,colomns,Time,Time of the measurement 79,LENGTH,colomns,Lenght of the chick,Lenght of the chick in cm 80,NAVEL,colomns,Navel score,"Navel quality score. 1= perfect, 2= moderate, 3= poor" 81,REDBEAK,colomns,Red beak score,"Red Hock score 0=No, 1=Yes" 82,REDHOCK,colomns,Red hock score,"Red Beak score 0=No, 1=Yes" 83,TOTEGG,colomns,Total eggs,Total number of eggs 84,INF,colomns,infertile,Number of infertile eggs 85,EMWK,colomns,Embryonic mortality,Embryononic mortality in week 1 or 2 86,EMd14tod18,colomns,Embryonic mortality,Embryononic mortality between day 14 and day 18 87,EMd18to21,colomns,Embryonic mortality,Embryononic mortality between day 18 and day 21 88,TOTLIVE,colomns,Total live,Total number of live chickens = 1st + 2nd grade 89,TOTALEGGS,colomns,Total eggs,Total number of eggs put in the basket 90,DEAD