title: Simulations of 2D Lennard-Jones particles with obstacles
author: Javanainen, Matti
description: Simulations of 2D Lennard-Jones particles with confining obstacles mimicking aggregating proteins (labeled 'a') and with non-confining obstacles corresponding to non-aggregating proteins (labeled 'na'), as well as a simulation without obstacles (labeled 'free').  Simulations are performed with GROMACS 4.5.6, and all simulation outputs and inputs are provided. The simulation parameter file (mdp) is common for all systems. Simulation details and explanation of the data are provided in the related publication "Protein Crowding in Lipid Bilayers Gives Rise to Non-Gaussian Anomalous Lateral Diffusion of Phospholipids and Proteins" by Jae-Hyung Jeon et al. at https://doi.org/10.1103/PhysRevX.6.021006