Position,Chr,Start,End,Strand,Peak Score,Focus Ratio/Region Size,Annotation,Detailed Annotation,Distance to TSS,Nearest PromoterID,Entrez ID,Nearest Unigene,Nearest Refseq,Nearest Ensembl,Gene Name,Gene Alias,Gene Description,Gene Type,"/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB1_TDT_l20210213_TCATGAGC_CTCTCTAT_S15_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (12086159.065708 Total, normalization factor = 0.83, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB2_TDT_l20210213_CCTGAGAT_TATCCTCT_S16_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (15607187.618682 Total, normalization factor = 0.64, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB3_TDT_l20210213_TAGCGAGT_GTAAGGAG_S17_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (14856462.9031955 Total, normalization factor = 0.67, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB4_TDT_l20210213_GTAGCTCC_ACTGCATA_S18_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (57062336.429763 Total, normalization factor = 0.18, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C571_TDT_l20210213_TACTACGC_AAGGAGTA_S19_L001_trim30 Tag Count in given bp (24759404.449972 Total, normalization factor = 0.40, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C572_TDT_l20210213_AGGCTCCG_CTAAGCCT_S20_L001_trim30 Tag Count in given bp (9892529.4841065 Total, normalization factor = 1.01, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C573_TDT_l20210213_GCAGCGTA_CGTCTAAT_S21_L001_trim30 Tag Count in given bp (9877605.400345 Total, normalization factor = 1.01, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C574_TDT_l20210213_CTGCGCAT_TCTCTCCG_S22_L001_trim30 Tag Count in given bp (15868991.8283925 Total, normalization factor = 0.63, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (2032455.533085 Total, normalization factor = 4.92, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1108485.778179 Total, normalization factor = 9.02, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1099820.8231305 Total, normalization factor = 9.09, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1314360.290132 Total, normalization factor = 7.61, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (2066253.53343 Total, normalization factor = 4.84, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1132152.129812 Total, normalization factor = 8.83, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1128119.545599 Total, normalization factor = 8.86, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1334867.968772 Total, normalization factor = 7.49, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/balbcj_Male_Kupffer_ATAC_LPS2hrFasted_20210331C_TDT_s20210331_TCCTGAGC_CCTAGAGT.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (15139893.235545 Total, normalization factor = 0.66, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/balbcj_Male_Kupffer_ATAC_LPS2hrFasted_20210331D_TDT_s20210331_GGACTCCT_GCGTAAGA.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (8768595.451304 Total, normalization factor = 1.14, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407D_TDT_s20210407_GTAGAGGA_TTATGCGA.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (17891179.421468 Total, normalization factor = 0.56, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407E_TDT_s20210407_GCTCATGA_CTCTCTAT.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (15359311.68934 Total, normalization factor = 0.65, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407F_TDT_s20210407_ATCTCAGG_TATCCTCT.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (13236340.176951 Total, normalization factor = 0.76, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331A_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1268088.564933 Total, normalization factor = 7.89, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331B_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1112505.9464505 Total, normalization factor = 8.99, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407A_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1421150.794425 Total, normalization factor = 7.04, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407B_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1368022.843378 Total, normalization factor = 7.31, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407C_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (704828.628238 Total, normalization factor = 14.19, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331A_trim30.mm10.bowtie2.sam Tag Count in given bp (1293346.69289 Total, normalization factor = 7.73, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331B_trim30.mm10.bowtie2.sam Tag Count in given bp (1146081.7077285 Total, normalization factor = 8.73, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407A_trim30.mm10.bowtie2.sam Tag Count in given bp (1458356.823263 Total, normalization factor = 6.86, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407B_trim30.mm10.bowtie2.sam Tag Count in given bp (1397269.319817 Total, normalization factor = 7.16, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407C_trim30.mm10.bowtie2.sam Tag Count in given bp (717605.79936 Total, normalization factor = 13.94, effective total = 10000000)",Basal accessibility,BALBcJ_PBS,C57BL6J_PBS,BALBcJ_LPS,C57BL6J_LPS
Merged-chr14-25379080-4,chr14,25378888,25379227,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-80128,NM_001310666,328365,Mm.227484,NM_183208,ENSMUSG00000007817,Zmiz1,BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10,"zinc finger, MIZ-type containing 1",protein-coding,50.88,94.51,55.19,31.02,51.7,45.49,54.67,21.11,0,0,0,0,0,0,0,0,120.87,171.07,29.62,123.05,132.21,0,0,0,0,0,0,0,0,0,0,Equal basal,5.67239468357223,5.11090481732257,6.52695374740419,6.15692114849384
Merged-chrM-12606-1,chrM,12486,12726,+,1000,.//peakIDR//BALBCJ_F0_Control.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1075.61,861.78,875.71,205.74,0,0,0,0,0,0,0,0,0,0,0,0,757.6,1215.7,605.89,718.13,812.16,0,0,0,0,0,0,0,0,0,0,High basal,9.22615033568153,0,9.25215224666385,9.30995131933669
Merged-chrM-5874-3,chrM,5699,6004,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1334.17,1069.7,1142.26,178.23,0,0,0,0,0,0,0,0,0,0,0,0,609.65,989.9,494.66,586.61,664.84,0,0,0,0,0,0,0,0,0,0,High basal,9.42566498146929,0,8.94776224707217,9.01939840587998
Merged-chr11-3137910-3,chr11,3137763,3138114,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 22 of 32)",Lx9|LINE|L1,13917,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,35.16,28.83,26.59,31.19,0.81,0,0,1.58,0,0,0,0,0,0,0,0,48.22,65,38.57,43.62,58.17,0,0,0,0,0,0,0,0,0,0,High basal,4.8648904566203,0.485918627655982,5.19037598596317,5.40343636020602
Merged-chr17-86677568-4,chr17,86677335,86677729,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L2|LINE|L2,-76332,NM_010137,13819,Mm.1415,NM_010137,ENSMUSG00000024140,Epas1,HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73,endothelial PAS domain protein 1,protein-coding,38.89,33.32,45.1,37.77,23.22,27.29,30.37,7.25,0,0,0,0,0,0,0,0,73.98,78.69,23.48,46.23,67.24,0,0,0,0,0,0,0,0,0,0,High basal,5.21041662906027,4.08040153855724,5.62654135111008,5.26551670504827
Merged-chr11-97412274-4,chr11,97412151,97412418,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-37876,NM_021493,58996,Mm.394118,NM_021493,ENSMUSG00000049807,Arhgap23,A330041B18Rik,Rho GTPase activating protein 23,protein-coding,18.2,21.14,12.12,26.46,19.59,7.08,17.21,7.56,0,0,0,0,0,0,0,0,29.06,59.3,16.21,31.9,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,4.21339019323681,3.41179862445835,4.77394348587456,4.82836411685773
Merged-chr7-96494162-3,chr7,96494004,96494339,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011858, intron 3 of 32)","intron (NM_011858, intron 3 of 32)",-152207,NR_046043,670727,Mm.421352,NR_046043,ENSMUSG00000085751,Gm15412,-,predicted gene 15412,ncRNA,36.41,32.04,47.45,48.02,1.82,3.03,4.56,1.26,0,0,0,0,0,0,0,0,89.17,139.13,3.91,35.16,36.26,0,0,0,0,0,0,0,0,0,0,High basal,5.2744874000655,1.53360181702131,6.16308431503026,4.05506715029579
Merged-chrM-9460-1,chrM,9360,9560,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,0,0.64,0.67,1.93,0,0,0,0,0,0,0,0,0,0,0,0,1.98,1.14,83.28,105.47,115.59,0,0,0,0,0,0,0,0,0,0,Equal basal,0.72622022836097,0,0.995934896037158,6.50942698119669
Merged-chr10-8122093-3,chr10,8121959,8122226,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER30|DNA|hAT-Charlie,-165969,NM_138667,68652,Mm.193041,NM_138667,ENSMUSG00000015755,Tab2,1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733,TGF-beta activated kinase 1/MAP3K7 binding protein 2,protein-coding,17.38,15.7,22.55,20.77,9.9,7.08,12.65,4.73,0,18.04,0,0,0,0,0,0,37.65,39.92,9.5,26.04,25.69,0,0,0,0,0,0,0,0,0,0,High basal,4.21097330152859,2.90225721205338,4.67782977894288,4.13894968825306
Merged-chr12-55466463-4,chr12,55466301,55466609,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,26192,NM_010907,18035,Mm.170515,NM_010907,ENSMUSG00000021025,Nfkbia,AI462015|Nfkbi,"nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha",protein-coding,55.85,57.99,39.38,35.66,47.86,54.08,33.41,28.04,0,0,0,0,0,0,0,0,85.21,167.64,42.48,88.55,115.59,0,0,0,0,0,0,0,0,0,0,Equal basal,5.45694023859552,5.06818622449564,6.26370201930057,6.10665368197175
Merged-chr19-44394135-4,chr19,44393929,44394339,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_009127),TTS (NM_009127),13575,NM_009127,20249,Mm.267377,NM_009127,ENSMUSG00000037071,Scd1,AA589638|AI265570|Scd|Scd-1|ab,stearoyl-Coenzyme A desaturase 1,protein-coding,28.96,50.3,29.62,43.9,34.33,28.3,38.98,17.33,0,0,0,0,0,0,0,0,69.35,131.15,25.71,92.45,110.3,0,0,0,0,0,0,0,0,0,0,Equal basal,5.15495855136951,4.61039882811808,5.94287375162638,5.86864432540397
Merged-chr19-15829266-3,chr19,15829030,15829482,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,95366,NM_001205339,107272,Mm.289936,NM_177420,ENSMUSG00000024640,Psat1,D8Ertd814e|EPIP|PSA|Psat,phosphoserine aminotransferase 1,protein-coding,28.96,17.3,29.28,37.94,12.12,11.62,6.58,16.38,0,0,0,0,0,0,0,0,62.09,90.09,20.12,46.23,49.86,0,0,0,0,0,0,0,0,0,0,High basal,4.7281125921551,3.32921829153094,5.59827123911529,5.05350825530973
Merged-chr4-116177212-4,chr4,116176947,116177420,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,3811,NM_001099295,67323,Mm.45442,NM_001099295,ENSMUSG00000078593,1700042G07Rik,-,RIKEN cDNA 1700042G07 gene,protein-coding,52.54,88.1,48.13,37.24,50.89,51.05,60.74,27.73,0,0,0,0,0,0,0,0,123.51,169.92,34.65,103.52,151.85,0,0,0,0,0,0,0,0,0,0,Equal basal,5.67083129857625,5.27941888096493,6.53760194127716,6.21446920530663
Merged-chr6-28622704-4,chr6,28622579,28622843,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_019776, intron 10 of 23)","intron (NM_019776, intron 10 of 23)",142363,NM_019776,56463,Mm.439987,NM_019776,ENSMUSG00000001424,Snd1,AL033314|Tudor-SN,staphylococcal nuclease and tudor domain containing 1,protein-coding,42.2,36.2,39.71,41.01,35.74,23.76,55.68,22.06,0,0,0,0,0,0,0,0,92.47,94.66,42.48,97.01,81.59,0,0,0,0,0,0,0,0,0,0,Equal basal,5.24985169202258,4.77329191583318,5.91538877346335,5.98490221054594
Merged-chr11-3163077-3,chr11,3162908,3163236,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)","intron (NM_030207, intron 9 of 32)",30391,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,58.74,44.85,57.21,55.29,2.02,3.03,0.51,4.41,0,0,0,0,0,0,0,0,58.12,62.72,73.78,78.13,104.26,0,0,0,0,0,0,0,0,0,0,High basal,5.6787242178657404,1.42572312900205,5.29668690240817,6.26049550230514
Merged-chr11-3136862-3,chr11,3136560,3137011,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 23 of 32)","intron (NM_030207, intron 23 of 32)",12764,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,76.53,47.09,50.15,38.55,0.81,1.01,0.51,1.58,0,0,0,0,0,0,0,0,42.93,76.41,67.63,64.46,89.9,0,0,0,0,0,0,0,0,0,0,High basal,5.60972067008033,0.705517376048096,5.22281151326898,6.0580807135611
Merged-chr19-12540826-1,chr19,12540631,12541022,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-32684,NM_001346545,107373,Mm.1643,NM_026640,ENSMUSG00000024691,Fam111a,4632417K18Rik|AW413625,"family with sequence similarity 111, member A",protein-coding,3.31,5.77,4.04,6.05,6.66,6.57,3.04,4.73,0,0,0,0,0,0,0,0,2.64,17.11,7.27,30.6,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,2.42020223129935,2.33092902876898,2.46795150566072,4.40778426767992
Merged-chr2-22811649-4,chr2,22811445,22811809,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_019456, intron 1 of 13)","intron (NM_019456, intron 1 of 13)",37300,NM_019456,54519,Mm.14255,NM_019456,ENSMUSG00000026786,Apbb1ip,9930118P07Rik|Prp48,"amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein",protein-coding,40.96,41.33,30.96,26.9,23.43,24.26,39.48,25.84,0,0,0,0,0,0,0,0,82.56,107.2,27.95,74.22,123.9,0,0,0,0,0,0,0,0,0,0,Equal basal,5.04664419716244,4.57881708727155,5.92311150759028,5.85896674641491
Merged-chr3-116189904-2,chr3,116189776,116190022,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-60211,NM_011693,22329,Mm.76649,NM_011693,ENSMUSG00000027962,Vcam1,CD106|Vcam-1,vascular cell adhesion molecule 1,protein-coding,19.86,24.67,25.24,28.3,22.82,17.18,34.93,16.38,0,0,0,0,0,0,0,0,51.52,57.02,29.62,75.52,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.55969641982248,4.24462715289774,5.14507259754122,5.44323456984037
Merged-chr7-106624562-2,chr7,106624452,106624684,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001277179, intron 1 of 2)","intron (NM_001277179, intron 1 of 2)",20077,NM_001277179,434223,Mm.276443,NM_001277179,NA,Gm1966,-,predicted gene 1966,protein-coding,2.48,0,0,0.09,10.5,8.09,3.04,4.1,29.52,0,95.47,15.22,24.2,44.16,39.89,7.49,1.32,0,13.97,22.14,55.91,43.37,17.98,31.66,21.93,85.13,769.32,671.85,325.71,669.16,1093.92,Low basal,0.422180083213625,2.52508772282926,0.483989783727736,4.59930264552688
Merged-chr10-122894764-4,chr10,122894594,122894936,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001110218, intron 6 of 9)","intron (NM_001110218, intron 6 of 9)",90959,NR_029527,387251,NA,NR_029527,ENSMUSG00000065406,Mirlet7i,Mirnlet7i|let-7i|mmu-let-7i,microRNA let7i,ncRNA,43.85,86.18,53.85,50.82,34.73,27.8,52.14,25.84,0,0,0,0,0,0,0,0,116.91,147.12,25.71,94.41,135.23,0,0,0,0,0,0,0,0,0,0,Equal basal,5.75461187366705,4.84892975075879,6.39560799749502,5.97540660824833
Merged-chr1-144215470-4,chr1,144215340,144215591,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,33639,NM_015811,50778,Mm.103701,NM_015811,ENSMUSG00000026358,Rgs1,BL34,regulator of G-protein signaling 1,protein-coding,40.54,46.13,24.23,36.98,43.42,38.41,27.84,16.38,0,0,0,0,0,0,0,0,54.82,69.57,41.92,67.71,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,5.1148005273055,4.66614337944575,5.32820728351461,5.71726591816946
Merged-chr2-102701677-4,chr2,102701531,102701819,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001077514, intron 1 of 10)","intron (NM_001077514, intron 1 of 10)",-4763,NM_011393,20511,Mm.267547,NM_011393,ENSMUSG00000005089,Slc1a2,1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1,"solute carrier family 1 (glial high affinity glutamate transporter), member 2",protein-coding,73.64,123.66,123.85,63.26,69.87,84.91,104.28,50.73,0,0,0,0,0,0,0,0,165.79,264.58,86.08,182.3,175.28,0,0,0,0,0,0,0,0,0,0,Equal basal,6.44240320200791,5.97671910843111,7.0645870155848,6.98395287191219
Merged-chr11-3177337-4,chr11,3177083,3177705,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 6 of 32)","intron (NM_030207, intron 6 of 32)",16069,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,91.43,80.73,89.19,79.12,0.81,0,0,1.89,0,0,0,0,0,0,0,0,103.04,131.15,114.02,106.12,147.32,0,0,0,0,0,0,0,0,0,0,High basal,6.32618550919629,0.577586000725592,6.22383094062637,6.77768477834022
Merged-chr9-99146013-1,chr9,99145895,99146132,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-5802,NM_029094,74769,Mm.213128,NM_029094,ENSMUSG00000032462,Pik3cb,1110001J02Rik|AI447572|p110beta,"phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta",protein-coding,5.79,1.92,6.73,3.33,7.07,6.07,8.1,1.89,0,0,0,0,0,0,0,0,13.87,11.4,7.83,26.04,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,2.27481863793362,2.38974011767673,3.17021099850356,4.19145223180214
Merged-chr2-133443678-4,chr2,133443491,133443865,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-108481,NM_007553,12156,Mm.103205,NM_007553,ENSMUSG00000027358,Bmp2,AI467020|Bmp2a,bone morphogenetic protein 2,protein-coding,79.43,55.74,70.68,61.16,49.27,48.02,63.78,23.63,0,0,0,0,0,0,0,0,145.31,171.07,42.48,143.89,164.7,0,0,0,0,0,0,0,0,0,0,Equal basal,5.97378756147006,5.2031729809591,6.65841129859372,6.50588276304261
Merged-chr6-146617199-2,chr6,146617048,146617369,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_026281, intron 6 of 11)","intron (NM_026281, intron 6 of 11)",17384,NM_026281,67623,Mm.278037,NM_026281,ENSMUSG00000040234,Tm7sf3,2010003B14Rik|NARP1,transmembrane 7 superfamily member 3,protein-coding,28.55,21.78,17.5,22.69,0.4,3.54,0.51,1.58,81.18,162.38,36.37,57.06,0,26.5,26.59,22.47,48.88,68.43,1.68,5.86,14.35,583.56,579.77,263.87,380.11,432.73,46.39,100.34,123.43,35.78,0,High basal,4.44308664230701,0.862649344854099,5.23594732958488,2.53893417365185
Merged-chr2-168540042-4,chr2,168539879,168540204,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001037177, intron 3 of 6)",L2|LINE|L2,50324,NM_001291178,18019,Mm.116802,NM_010899,ENSMUSG00000027544,Nfatc2,AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp,"nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2",protein-coding,49.23,70.16,45.43,53.1,36.15,24.26,53.66,32.77,0,0,0,0,0,0,0,0,98.42,155.1,36.89,96.36,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,5.67178248296116,4.91687208522134,6.31064026817155,5.94064160644917
Merged-chr11-3163847-3,chr11,3163724,3163977,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)",RLTR51B_Mm|LTR|ERVK?,29613,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,40.96,26.91,33.32,24.18,0.4,1.01,2.53,1.26,0,0,0,0,0,0,0,0,36.99,27.37,46.95,43.62,55.91,0,0,0,0,0,0,0,0,0,0,High basal,4.88628519572113,0.941367264168196,4.40747460538025,5.47781202147037
Merged-chr16-24199966-4,chr16,24199823,24200096,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-117269,NR_155457,108168278,Mm.417246,NR_155457,NA,Gm46545,-,"predicted gene, 46545",ncRNA,35.99,38.12,27.6,26.99,38.17,22.24,38.47,9.14,0,0,0,0,0,0,0,0,77.28,95.8,41.36,77.48,87.64,0,0,0,0,0,0,0,0,0,0,Equal basal,4.93446632623825,4.34230657343934,5.79649303821065,5.89960069283371
Merged-chr10-122815286-6,chr10,122815161,122815414,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001110218, intron 4 of 9)","intron (NM_001110218, intron 4 of 9)",135972,NR_106182,102466884,NA,NR_106182,ENSMUSG00000099225,Mir8104,Gm27380|mmu-mir-8104,microRNA 8104,ncRNA,120.39,103.48,85.82,77.72,4.04,3.03,9.11,6.3,108.24,45.11,177.3,239.66,29.04,53,79.78,97.39,124.18,207.56,6.71,48.18,86.13,429.78,548.31,207.58,369.15,510.76,425.25,414.46,236.57,325.64,592.25,High basal,6.49191168105658,2.41870581771266,6.68434849824878,4.83390076071851
Merged-chr4-9073957-4,chr4,9073798,9074118,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-195335,NM_001355183,74438,Mm.473368,NM_028940,ENSMUSG00000041216,Clvs1,4933402J24Rik|Clvl1|Rlbp1l1,clavesin 1,protein-coding,17.79,33.32,34.67,35.22,30.49,42.46,53.15,29.93,0,0,0,0,0,0,0,0,83.22,94.66,29.06,100.92,118.61,0,0,0,0,0,0,0,0,0,0,Equal basal,4.81243017252823,5.00982862608048,5.84056620279079,6.00213321840431
Merged-chrM-11985-5,chrM,11658,12269,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,2704.75,2178.8,2255.92,632.2,0,0,0,0,0,0,0,0,0,0,0,0,2275.45,3579.82,1849.51,2170.02,2431.19,0,0,0,0,0,0,0,0,0,0,High basal,10.6373071553477,0,10.8229397474265,10.9041507862996
Merged-chr11-3155987-1,chr11,3155790,3156184,+,1000,.//peakIDR//BALBCJ_F0_Control.idr,"intron (NM_030207, intron 12 of 32)","intron (NM_030207, intron 12 of 32)",31966,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,32.68,38.76,28.94,22.52,0,0,0,0,0,0,0,0,0,0,0,0,19.15,29.65,54.22,20.18,36.26,0,0,0,0,0,0,0,0,0,0,High basal,4.85889373642022,0,4.01088366642198,4.98998925715532
Merged-chr11-3160532-3,chr11,3160237,3160799,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)",MTD|LTR|ERVL-MaLR,32945,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,74.88,35.88,56.54,49.33,2.42,3.03,2.53,1.89,0,0,0,0,0,0,0,0,78.6,128.87,102.29,114.59,160.17,0,0,0,0,0,0,0,0,0,0,High basal,5.64004195849448,1.54854781335977,6.01901746523146,6.80207427264878
Merged-chrM-13120-1,chrM,12991,13250,+,1000,.//peakIDR//BALBCJ_F0_Control.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1184.41,957.25,975.67,162.54,0,0,0,0,0,0,0,0,0,0,0,0,564.73,923.75,471.74,550.15,611.2,0,0,0,0,0,0,0,0,0,0,High basal,9.25269539999542,0,8.84289595669504,8.92547137990142
Merged-chr11-17907036-8,chr11,17906866,17907251,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,46817,NM_026576,68145,Mm.178684,NM_026576,ENSMUSG00000016984,Etaa1,5730466H23Rik|AA672646,Ewing tumor-associated antigen 1,protein-coding,49.64,29.79,60.92,54.41,36.15,31.84,62.26,19.53,214.03,378.9,322.78,197.81,193.59,370.97,221.61,179.79,107,133.43,36.33,128.91,163.94,1206.54,1496.62,527.74,1187.85,1092.46,1372.41,1544.39,836.56,1213.08,1546.81,Equal basal,5.4871711469955,4.8747773898934,6.2629717324371,6.37752709892253
Merged-chr11-3176688-3,chr11,3176562,3176832,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 6 of 32)",B3|SINE|B2,16766,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,79.43,49.02,67.98,42.85,0.4,0.51,0,0.63,0,0,0,0,0,0,0,0,93.79,147.12,64.28,115.24,175.28,0,0,0,0,0,0,0,0,0,0,High basal,5.78579755976362,0.286060689590651,6.23875250680844,6.62633941223171
Merged-chrM-11226-3,chrM,11045,11441,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1791.72,1427.23,1490.6,401.75,0,0,0,0,0,0,0,0,0,0,0,0,1504.63,2470.18,1249.22,1460.35,1664.36,0,0,0,0,0,0,0,0,0,0,High basal,10.0236440038606,0,10.2573226643473,10.343113369927
Merged-chr17-10824774-4,chr17,10824604,10824939,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027032, intron 1 of 4)","intron (NM_027032, intron 1 of 4)",15420,NM_027032,69310,Mm.18889,NM_027032,ENSMUSG00000037196,Pacrg,1700008H23Rik,PARK2 co-regulated,protein-coding,31.03,27.55,24.23,36.71,18.17,20.22,30.37,23.95,0,0,0,0,0,0,0,0,68.69,109.48,19,73.57,70.26,0,0,0,0,0,0,0,0,0,0,Equal basal,4.83330201308577,4.31317156060796,5.80777144267232,5.40643090352272
Merged-chr5-67600132-4,chr5,67599980,67600277,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-7755,NM_001033415,330096,Mm.442747,NM_001033415,ENSMUSG00000050010,Shisa3,D830007B15Rik,shisa family member 3,protein-coding,31.03,32.36,24.23,40.13,21.41,10.61,31.89,23.63,0,0,0,0,0,0,0,0,58.12,70.71,30.18,57.29,55.91,0,0,0,0,0,0,0,0,0,0,Equal basal,4.91772889014795,4.14031125323857,5.38083130610474,5.39708041755823
Merged-chr15-53474326-4,chr15,53474159,53474487,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177225, intron 4 of 4)","intron (NM_177225, intron 4 of 4)",-128140,NM_010162,14042,Mm.309395,NM_010162,ENSMUSG00000061731,Ext1,AA409028,exostoses (multiple) 1,protein-coding,38.06,17.3,36.01,41.62,39.58,23.25,52.14,21.74,0,0,0,0,0,0,0,0,58.12,106.06,42.48,50.78,105.77,0,0,0,0,0,0,0,0,0,0,Equal basal,4.92928938766479,4.77426980507189,5.66732292291411,5.80240822283572
Merged-chr1-74295698-4,chr1,74295521,74295874,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027154, intron 1 of 11)","intron (NM_027154, intron 1 of 11)",8639,NM_027154,69660,Mm.261182,NM_027154,ENSMUSG00000006301,Tmbim1,2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161,transmembrane BAX inhibitor motif containing 1,protein-coding,138.17,178.44,147.41,70.71,93.9,94.52,78.46,42.85,0,0,0,0,0,0,0,0,272.13,402.57,77.69,246.76,278.78,0,0,0,0,0,0,0,0,0,0,Equal basal,6.89890611067723,5.95637572309218,7.72083211061215,7.30148682977897
Merged-chr9-102988802-4,chr9,102988609,102988978,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-19696,NM_033314,24059,Mm.207106,NM_033314,ENSMUSG00000032548,Slco2a1,2310021C19Rik|Pgt|Slc21a2|mPgt,"solute carrier organic anion transporter family, member 2a1",protein-coding,32.27,25.63,25.24,31.46,39.58,35.38,48.09,21.11,0,0,0,0,0,0,0,0,62.75,103.78,29.06,115.89,139.77,0,0,0,0,0,0,0,0,0,0,Equal basal,4.78194825975737,4.88062110419655,5.70588197458668,6.14590466249831
Merged-chr1-138288920-4,chr1,138288781,138289104,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_177397, exon 3 of 3)","3' UTR (NM_177397, exon 3 of 3)",15204,NM_177397,338375,Mm.114424,NM_177397,ENSMUSG00000026394,Atp6v1g3,-,"ATPase, H+ transporting, lysosomal V1 subunit G3",protein-coding,24.82,51.9,41.73,43.2,26.86,27.8,46.57,26.78,0,0,0,0,0,0,0,0,78.6,107.2,43.6,84.64,83.1,0,0,0,0,0,0,0,0,0,0,Equal basal,5.22959304907825,4.72965275058074,5.88822662828747,5.94120787735353
Merged-chr11-3161384-3,chr11,3161175,3161554,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)","intron (NM_030207, intron 9 of 32)",32099,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,78.6,49.66,65.29,52.31,3.43,4.04,4.56,2.21,0,0,0,0,0,0,0,0,58.12,86.67,84.4,95.06,129.19,0,0,0,0,0,0,0,0,0,0,High basal,5.84285621027892,1.86136131497314,5.52439299666322,6.51929387920473
Merged-chr11-3141913-3,chr11,3141784,3142066,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 21 of 32)","intron (NM_030207, intron 21 of 32)",17904,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,119.14,88.74,97.6,51.35,3.43,4.55,1.01,3.78,0,0,0,0,0,0,0,0,80.58,124.31,69.87,87.24,129.95,0,0,0,0,0,0,0,0,0,0,High basal,6.33516308625694,1.75874093466028,6.01103773716898,6.39139088021399
Merged-chr5-139479303-4,chr5,139479130,139479462,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133349, intron 3 of 6)","intron (NM_133349, intron 3 of 6)",5195,NM_133349,100494,Mm.24521,NM_133349,ENSMUSG00000053581,Zfand2a,AA407930|AU016206|Airap,"zinc finger, AN1-type domain 2A",protein-coding,49.64,75.61,38.37,52.05,36.96,29.32,14.17,30.56,0,0,0,0,0,0,0,0,82.56,131.15,25.71,82.69,71.02,0,0,0,0,0,0,0,0,0,0,High basal,5.64181858560242,4.50754124238833,6.06638518300141,5.60744350643698
Merged-chrM-1977-3,chrM,1780,2115,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1550.95,1213.22,1260.06,296.61,0,0,0,0,0,0,0,0,0,0,0,0,1128.81,1878.29,956.9,1090.54,1245.81,0,0,0,0,0,0,0,0,0,0,High basal,9.7434488252737,0,9.85280432490536,9.93557380880654
Merged-chr7-45529734-4,chr7,45529568,45529865,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_148927, intron 1 of 19)","intron (NM_148927, intron 1 of 19)",3386,NM_148927,69217,Mm.274158,NM_148927,ENSMUSG00000040428,Plekha4,2410005C22Rik|C88169|Pepp1,"pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4",protein-coding,28.96,40.37,20.87,17.35,33.12,34.87,33.92,20.17,0,0,0,0,0,0,0,0,48.22,79.83,23.48,63.8,111.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.63678953683932,4.67484211451271,5.33495650849611,5.65409195519419
Merged-chr5-72851950-4,chr5,72851806,72852118,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013689, intron 1 of 17)",L2|LINE|L2,16486,NM_001113461,21682,Mm.319581,NM_013689,ENSMUSG00000029217,Tec,-,tec protein tyrosine kinase,protein-coding,52.13,44.85,27.6,30.93,46.45,37.91,33.41,17.96,0,0,0,0,0,0,0,0,89.17,115.18,29.06,71.62,112.57,0,0,0,0,0,0,0,0,0,0,Equal basal,5.17515566142166,4.77646969269569,6.02873302252402,5.81492182239755
Merged-chrM-15598-3,chrM,15457,15726,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1198.89,955.01,996.54,222.74,0,0,0,0,0,0,0,0,0,0,0,0,801.19,1273.86,653.39,752.64,855.22,0,0,0,0,0,0,0,0,0,0,High basal,9.37706738505498,0,9.32610008903033,9.39354458908698
Merged-chrM-661-3,chrM,512,857,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1525.71,1225.4,1253.33,365.65,0,0,0,0,0,0,0,0,0,0,0,0,1295.91,2094.98,1063.09,1239.64,1417.31,0,0,0,0,0,0,0,0,0,0,High basal,9.81456369899169,0,10.0309610782244,10.1096581609327
Merged-chr15-90109617-4,chr15,90109478,90109806,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-114669,NM_001033441,380959,Mm.17853,NM_001033441,ENSMUSG00000075470,Alg10b,AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5,"asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)",protein-coding,64.95,30.43,57.55,57.13,33.52,52.06,58.21,10.08,0,0,0,0,0,0,0,0,140.03,174.49,51.42,100.26,113.32,0,0,0,0,0,0,0,0,0,0,Equal basal,5.58496103165588,4.77722475786062,6.64608540074799,6.24666820409365
Merged-chr16-24629969-2,chr16,24629842,24630090,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178665, intron 5 of 12)","intron (NM_178665, intron 5 of 12)",-91889,NM_001145954,210126,Mm.209385,NM_178665,ENSMUSG00000033306,Lpp,9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16,LIM domain containing preferred translocation partner in lipoma,protein-coding,18.62,20.5,10.77,16.21,15.75,13.65,13.67,10.08,0,0,0,0,0,0,0,0,31.04,68.43,14.53,44.27,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,3.9936738204063,3.54602724436407,4.91981803934615,4.75402054498671
Merged-chr11-3154253-3,chr11,3154066,3154416,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 13 of 32)",B3|SINE|B2,30220,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,47.58,59.59,46.78,42.85,6.26,10.11,3.04,5.36,0,0,0,0,0,0,0,0,72.66,98.08,68.19,81.38,133.72,0,0,0,0,0,0,0,0,0,0,High basal,5.53734970538227,2.51146130702084,5.7694608134138,6.36054479728398
Merged-chr4-137943753-2,chr4,137943641,137943868,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_199307, intron 9 of 19)",L1MB3|LINE|L1,-49702,NM_001256198,230861,Mm.268903,NM_172703,ENSMUSG00000028760,Eif4g3,1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8,"eukaryotic translation initiation factor 4 gamma, 3",protein-coding,4.55,0,0,0,2.63,1.01,2.02,0.63,0,0,90.92,22.82,31.46,79.49,8.86,41.2,0.66,2.28,5.03,31.9,49.11,67.03,17.98,0,3.65,0,96.65,213.77,198.85,300.59,125.42,Equal basal,0.558638914334595,1.09989053341883,0.872589666057992,4.25497288343148
Merged-chr9-13671359-4,chr9,13671198,13671516,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_173776, intron 1 of 3)","intron (NM_173776, intron 1 of 3)",8897,NM_173776,270118,Mm.116898,NM_173776,ENSMUSG00000031925,Maml2,5930431H10|BC032967,mastermind like transcriptional coactivator 2,protein-coding,42.61,41.01,49.14,51.35,41.6,25.78,54.67,24.89,0,0,0,0,0,0,0,0,95.77,139.13,37.45,86.59,115.59,0,0,0,0,0,0,0,0,0,0,Equal basal,5.45103458051867,4.88794971681071,6.21387157408752,6.03655458544444
Merged-chrM-14639-8,chrM,13990,15245,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,5664.74,4512.66,4707.38,1166.71,0,0,0,0,0,0,0,0,0,0,0,0,4243.09,6856.29,3491.11,4084.82,4634.97,0,0,0,0,0,0,0,0,0,0,High basal,11.6523914969075,0,11.7408175366518,11.8237887392226
Merged-chr11-3158295-2,chr11,3158133,3158439,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 10 of 32)","intron (NM_030207, intron 10 of 32)",34265,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,89.77,68.56,74.38,43.55,5.86,5.56,3.54,5.36,0,0,0,0,0,0,0,0,52.18,53.6,45.27,59.9,80.84,0,0,0,0,0,0,0,0,0,0,High basal,5.98475580413256,2.27763001647055,5.1107962476797,5.7827913883945
Merged-chrM-4356-7,chrM,3854,4790,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,4210.19,3387.54,3514.63,940.02,0,0,0,0,0,0,0,0,0,0,0,0,3413.5,5563.03,2812,3254.05,3715.53,0,0,0,0,0,0,0,0,0,0,High basal,11.2587869267064,0,11.4332080443692,11.504185267109
Merged-chr6-94221895-2,chr6,94221700,94222040,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NR_130996, intron 1 of 1)",URR1B|DNA|hAT-Charlie,15572,NR_130996,78178,Mm.452749,NR_130996,ENSMUSG00000045095,4930511A08Rik,-,RIKEN cDNA 4930511A08 gene,ncRNA,22.34,31.4,23.56,25.67,1.41,4.04,8.61,1.58,0,0,0,0,0,0,0,0,29.72,49.04,7.83,14.97,10.58,0,0,0,0,0,0,0,0,0,0,High basal,4.63478427011996,1.75549332768628,4.65676965766577,3.412206856189
Merged-chr11-114249459-1,chr11,114249346,114249572,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,51201,NR_045930,73536,Mm.54275,NR_045930,ENSMUSG00000078600,1700092K14Rik,-,RIKEN cDNA 1700092K14 gene,ncRNA,0,0,3.37,0.53,2.22,1.01,1.01,0.63,0,0,0,0,0,0,0,0,3.3,1.14,7.83,22.14,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,0.689331460474686,0.935085580409042,1.23492162419566,4.07547650045033
Merged-chr6-86570962-4,chr6,86570814,86571118,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,43565,NR_037961,72012,Mm.349174,NR_037960,ENSMUSG00000097048,1600020E01Rik,-,RIKEN cDNA 1600020E01 gene,ncRNA,39.71,52.86,30.29,23.48,23.63,33.36,26.83,15.75,0,0,0,0,0,0,0,0,54.82,98.08,21.24,65.11,90.66,0,0,0,0,0,0,0,0,0,0,Equal basal,5.0730033251181,4.37856313297844,5.57066651771597,5.52078540267409
Merged-chr11-3153877-4,chr11,3153735,3154024,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 13 of 32)","intron (NM_030207, intron 13 of 32)",29858,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,106.32,101.56,105.68,72.99,32.71,37.4,65.3,23.95,0,0,0,0,0,0,0,0,118.89,174.49,125.2,158.21,207.76,0,0,0,0,0,0,0,0,0,0,High basal,6.49401465304899,4.99105297900016,6.52930362849704,7.1764151234309
Merged-chr9-120881395-2,chr9,120881223,120881561,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,MTE2b|LTR|ERVL-MaLR,33858,NR_040742,76402,Mm.436588,NR_040742,ENSMUSG00000100146,1700020M21Rik,-,RIKEN cDNA 1700020M21 gene,ncRNA,26.48,22.11,23.9,32.77,1.41,0,1.01,1.26,0,0,0,0,0,0,0,0,64.73,76.41,2.24,5.21,13.6,0,0,0,0,0,0,0,0,0,0,High basal,4.65336493912917,0.738185007697591,5.51136911172796,2.5703973328128
Merged-chr11-3129088-1,chr11,3128852,3129324,+,1000,.//peakIDR//BALBCJ_F0_Control.idr,"non-coding (NR_003517, exon 4 of 7)","non-coding (NR_003517, exon 4 of 7)",5067,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,31.44,21.78,23.56,30.49,1.21,1.01,1.01,3.78,0,0,0,0,0,0,0,0,16.51,27.37,34.65,28.65,33.24,0,0,0,0,0,0,0,0,0,0,High basal,4.68787990907121,1.23512244739673,3.85723593374357,4.89769263568702
Merged-chrM-1235-3,chrM,955,1620,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,2927.73,2348.6,2439.01,661.38,0,0,0,0,0,0,0,0,0,0,0,0,2367.92,3702.99,1923.29,2267.68,2531.67,0,0,0,0,0,0,0,0,0,0,High basal,10.737306802358,0,10.8760463493768,10.9635759348279
Merged-chr13-58481375-4,chr13,58481123,58481576,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-78006,NM_001301341,15387,Mm.142872,NM_025279,ENSMUSG00000021546,Hnrnpk,Hnrpk|KBBP|NOVA,heterogeneous nuclear ribonucleoprotein K,protein-coding,46.75,38.76,26.92,45.91,39.78,33.86,49.1,24.58,0,0,0,0,0,0,0,0,80.58,101.5,28.51,89.2,111.06,0,0,0,0,0,0,0,0,0,0,Equal basal,5.21053455905513,4.9253869174525,5.86712063313337,5.90322449256693
Merged-chr8-80982656-2,chr8,80982446,80982837,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_027554, intron 9 of 9)","intron (NM_027554, intron 9 of 9)",32265,NM_027554,74841,Mm.246018,NM_027554,ENSMUSG00000038250,Usp38,4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891,ubiquitin specific peptidase 38,protein-coding,4.14,3.84,5.38,6.31,13.73,6.07,8.1,4.1,2.46,0,0,0,16.94,48.58,53.19,22.47,11.89,10.26,12.86,49.48,73.28,110.4,0,45.74,43.86,42.56,340.2,401.37,236.57,286.27,306.58,Equal basal,2.4685060637752,2.79545902361835,3.00465971764089,5.06005949268931
Merged-chr1-21070269-4,chr1,21070090,21070402,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177409, intron 1 of 10)","intron (NM_177409, intron 1 of 10)",8979,NM_177409,170829,Mm.185680,NM_177409,ENSMUSG00000041779,Tram2,C330003D03Rik,translocating chain-associating membrane protein 2,protein-coding,35.16,36.2,28.27,37.42,27.06,24.77,32.9,21.43,0,0,0,0,0,0,0,0,66.05,99.22,38.01,48.83,83.1,0,0,0,0,0,0,0,0,0,0,Equal basal,5.02963465380233,4.49476771039938,5.71024399745122,5.61728516501712
Merged-chr10-122745937-4,chr10,122745769,122746087,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001110218, intron 1 of 9)",ORR1F|LTR|ERVL-MaLR,66613,NR_106182,102466884,NA,NR_106182,ENSMUSG00000099225,Mir8104,Gm27380|mmu-mir-8104,microRNA 8104,ncRNA,18.62,21.78,14.14,26.37,29.48,20.22,31.38,19.85,0,0,0,0,0,0,0,0,34.35,61.58,34.65,44.92,94.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2730853503597,4.41914613217278,4.9158303094693,5.5952273339244
Merged-chrM-200-3,chrM,1,378,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1610.11,1277.62,1345.21,382.13,0,0,0,0,0,0,0,0,0,0,0,0,1356.02,2158.84,1119.55,1318.42,1480.77,0,0,0,0,0,0,0,0,0,0,High basal,9.890359699698,0,10.0852744036125,10.1851657224446
Merged-chr13-52600514-4,chr13,52600285,52600674,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011518, intron 1 of 13)","intron (NM_011518, intron 1 of 13)",3597,NM_011518,20963,Mm.375031,NM_011518,ENSMUSG00000021457,Syk,Sykb,spleen tyrosine kinase,protein-coding,86.88,171.08,150.78,63.61,113.9,96.03,124.52,29.93,0,0,0,0,0,0,0,0,202.12,269.14,91.11,210.95,245.54,0,0,0,0,0,0,0,0,0,0,Equal basal,6.68974584670081,6.07004103033635,7.21868522661752,7.24174005972498
Merged-chr12-112517184-4,chr12,112516950,112517346,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15-int|LTR|ERVL,-5988,NM_178915,104885,Mm.37751,NM_178915,ENSMUSG00000054013,Tmem179,AI839735,transmembrane protein 179,protein-coding,55.44,55.74,46.11,46.09,54.12,50.04,43.53,35.29,0,0,0,0,0,0,0,0,119.55,156.24,36.33,115.89,191.9,0,0,0,0,0,0,0,0,0,0,Equal basal,5.59209147436752,5.26166044493779,6.45443540548969,6.40196911849421
Merged-chr13-19371221-2,chr13,19371090,19371346,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001347485, intron 4 of 7)","intron (NM_001347485, intron 4 of 7)",24595,NM_024270,76205,Mm.41940,NM_024270,ENSMUSG00000003062,Stard3nl,0610035N01Rik|6530409L22Rik|AW124774|MENTHO,STARD3 N-terminal like,protein-coding,0,0.64,0,0,2.42,1.52,4.05,2.84,2.46,81.19,0,0,55.66,79.49,26.59,0,0,0,3.91,34.51,37.77,31.54,35.95,35.18,54.82,0,460.05,366.47,164.57,411.52,494.7,Low basal,0.157889900530756,1.55267258835779,0,4.06530206005185
Merged-chr7-19832012-4,chr7,19831852,19832189,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9265,NM_033601,12051,Mm.439658,NM_033601,ENSMUSG00000053175,Bcl3,AI528691|Bcl-3,B cell leukemia/lymphoma 3,protein-coding,27.72,36.84,36.68,32.51,34.53,28.3,26.83,23.63,0,0,0,0,0,0,0,0,67.37,94.66,26.83,67.06,85.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.99053405943707,4.5882176183775,5.6909053958378,5.61531791200634
Merged-chr10-34089678-4,chr10,34089502,34089848,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001162937, intron 4 of 6)","intron (NM_001162937, intron 4 of 6)",6844,NM_178908,103511,Mm.66334,NM_178908,ENSMUSG00000049872,Fam26e,BB146404|Calhm5,"family with sequence similarity 26, member E",protein-coding,43.02,31.08,23.22,32.07,29.28,12.64,30.37,22.69,0,0,0,0,0,0,0,0,65.39,111.76,25.15,67.71,72.53,0,0,0,0,0,0,0,0,0,0,Equal basal,4.92421271997587,4.28381666064365,5.78758355435562,5.5126885550018
Merged-chr11-3174419-3,chr11,3174305,3174567,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 6 of 32)",B4A|SINE|B4,19027,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,523.74,422.88,410.93,157.63,1.01,1.52,1.52,0.63,0,0,0,0,0,0,0,0,341.48,489.25,261.58,306,333.93,0,0,0,0,0,0,0,0,0,0,High basal,8.34228469256416,0.771394425125667,8.02393772275788,8.07155418237035
Merged-chr11-3151495-3,chr11,3151289,3151661,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)",B1F|SINE|Alu,27454,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,25.65,23.07,19.86,27.95,0.2,1.01,0.51,0,0,0,0,0,0,0,0,0,36.99,45.62,54.78,60.55,80.08,0,0,0,0,0,0,0,0,0,0,High basal,4.54052517226259,0.219598748392113,4.75794215154075,5.87374883711919
Merged-chr14-75024991-4,chr14,75024806,75025214,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_198642, intron 1 of 13)","intron (NM_198642, intron 1 of 13)",8983,NM_198642,271221,Mm.320280,NM_198642,ENSMUSG00000034959,Rubcnl,5031414D18Rik|Gm744|Gm911|Kiaa0226l,RUN and cysteine rich domain containing beclin 1 interacting protein like,protein-coding,32.68,67.6,26.59,35.05,46.45,63.18,33.41,23.95,0,0,0,0,0,0,0,0,93.79,108.34,33.54,102.22,126.17,0,0,0,0,0,0,0,0,0,0,Equal basal,5.17725928060094,5.06350595529855,6.0211781984394,6.10482461188943
Merged-chr17-26512627-4,chr17,26512469,26512786,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4155,NM_013642,19252,Mm.239041,NM_013642,ENSMUSG00000024190,Dusp1,3CH134|MKP1|Ptpn16|U19515|erp|mkp-1,dual specificity phosphatase 1,protein-coding,44.68,35.24,27.26,33.3,25.44,17.18,42.01,23,0,0,0,0,0,0,0,0,72.66,93.52,26.27,66.41,87.64,0,0,0,0,0,0,0,0,0,0,Equal basal,5.05445123442327,4.46193357713607,5.73573784910069,5.61325535745855
Merged-chrM-3605-2,chrM,3438,3795,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1591.9,1269.29,1332.42,368.28,0,0,0,0,0,0,0,0,0,0,0,0,1322.33,2110.94,1089.36,1280.01,1418.82,0,0,0,0,0,0,0,0,0,0,High basal,9.86718509880934,0,10.05097614867,10.1372948224165
Merged-chrM-2429-4,chrM,2159,2699,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,2420.54,1928.92,2023.03,547.65,0,0,0,0,0,0,0,0,0,0,0,0,1946.51,3136.19,1584.58,1858.16,2115.39,0,0,0,0,0,0,0,0,0,0,High basal,10.4623707121716,0,10.6149997897933,10.6884009026639
Merged-chr10-93969502-1,chr10,93969358,93969647,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_001304572, exon 12 of 12)","3' UTR (NM_001304572, exon 12 of 12)",-5639,NR_029764,723908,NA,NR_029764,ENSMUSG00000065607,Mir331,Mirn331|mmu-mir-331,microRNA 331,ncRNA,0.83,0.64,1.35,0.44,11.11,5.05,8.61,5.04,0,0,0,0,0,0,0,0,0.66,0,16.77,70.97,78.57,0,0,0,0,0,34.79,34.9,17.14,21.47,76.64,Low basal,0.777893022712476,2.75204223345496,0.281847352415252,5.38430070039009
Merged-chr9-16038733-3,chr9,16038600,16038875,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001080814, intron 3 of 24)","intron (NM_001080814, intron 3 of 24)",-164181,NM_145712,244701,Mm.222631,NM_145712,ENSMUSG00000050901,Mtnr1b,Mel-1B-R|Mel1b|Mt2,melatonin receptor 1B,protein-coding,23.99,32.04,23.9,42.85,6.46,6.07,14.17,4.73,0,0,0,0,0,0,0,0,53.5,66.15,8.38,20.18,26.44,0,0,0,0,0,0,0,0,0,0,High basal,4.84589695787247,2.77980664369139,5.27561187499766,3.98063426597456
Merged-chr1-64078531-4,chr1,64078369,64078700,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_033563, intron 2 of 3)","intron (NM_033563, intron 2 of 3)",-36033,NR_105864,102466760,NA,NR_105864,ENSMUSG00000098487,Mir6899,Gm27384|mmu-mir-6899,microRNA 6899,ncRNA,46.33,55.42,40.72,47.67,38.98,36.39,37.96,17.64,0,0,0,0,0,0,0,0,80.58,130.01,19.56,95.06,98.21,0,0,0,0,0,0,0,0,0,0,Equal basal,5.4924365046302,4.74332830427682,6.04293918719654,5.69945335034656
Merged-chr11-3183969-3,chr11,3183802,3184171,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 4 of 32)","intron (NM_030207, intron 4 of 32)",9477,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,40.54,36.2,46.44,21.91,2.02,3.03,0.51,0.95,0,0,0,0,0,0,0,0,37.65,94.66,44.16,63.15,107.28,0,0,0,0,0,0,0,0,0,0,High basal,5.07262317566951,0.979780811686951,5.28249228441072,5.9298789742249
Merged-chrM-16141-3,chrM,15970,16290,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,1278.74,1027.09,1022.45,255.33,0,0,0,0,0,0,0,0,0,0,0,0,891.68,1401.59,705.93,823.6,916.42,0,0,0,0,0,0,0,0,0,0,High basal,9.48493465621995,0,9.47199915510978,9.50713823631729
Merged-chr8-35567479-8,chr8,35567323,35567638,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-20318,NM_001081279,52065,Mm.103246,NM_001081279,ENSMUSG00000070056,Mfhas1,2310066G09Rik|D8Ertd91e,malignant fibrous histiocytoma amplified sequence 1,protein-coding,101.77,94.83,97.26,73.69,47.25,58.63,59.73,39.38,383.77,838.98,577.37,718.98,130.67,260.57,336.84,284.67,152.58,226.95,51.42,126.96,138.26,1671.81,1626.96,900.68,1345.01,1681.26,1252.56,1143.02,658.28,1009.11,940.63,High basal,6.429014379608,5.42015603816422,6.89533483007431,6.45339233508771
Merged-chr11-3133585-3,chr11,3133449,3133718,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 29 of 32)","intron (NM_030207, intron 29 of 32)",9562,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,96.39,77.21,88.51,70.8,0,0.51,0,0,0,0,0,0,0,0,0,0,72.66,104.92,94.46,69.01,90.66,0,0,0,0,0,0,0,0,0,0,High basal,6.28591514154328,0,5.81726170166202,6.25347907906241
Merged-chr11-3145814-3,chr11,3145605,3146026,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 15 of 32)","intron (NM_030207, intron 15 of 32)",21794,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,145.21,95.47,121.83,78.69,1.21,1.52,4.05,1.26,0,0,0,0,0,0,0,0,103.7,127.73,75.46,93.75,120.88,0,0,0,0,0,0,0,0,0,0,High basal,6.66293345303605,1.24607545463999,6.20957320004894,6.42776445329257
Merged-chr4-63372144-4,chr4,63371953,63372291,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001045514, intron 18 of 21)","intron (NM_001045514, intron 18 of 21)",9673,NM_011016,18406,Mm.14173,NM_011016,ENSMUSG00000061540,Orm2,Agp1|Orm-2,orosomucoid 2,protein-coding,22.34,41.97,23.56,36.71,28.27,24.26,41,29.62,0,0,0,0,0,0,0,0,66.05,95.8,29.06,78.78,83.1,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85859478038653,4.69985754171061,5.68538952811958,5.71617896951305
Merged-chr14-70950122-7,chr14,70949954,70950340,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001302094, intron 3 of 7)","intron (NM_001302094, intron 3 of 7)",60040,NM_001302094,14586,Mm.32619,NM_008115,ENSMUSG00000022103,Gfra2,-,glial cell line derived neurotrophic factor family receptor alpha 2,protein-coding,44.27,45.49,35,50.03,33.93,44.48,30.88,13.55,287.83,270.64,327.33,372.8,217.79,145.74,296.95,161.06,88.51,110.62,31.3,93.75,105.01,1135.57,1024.71,679.03,1005.1,1241.44,873.7,785.28,716.56,912.49,898.82,Equal basal,5.3716661760392,4.59675922063,5.99475984967457,5.94420343623888
Merged-chr13-95679908-4,chr13,95679716,95680094,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_027711, intron 17 of 35)","intron (NM_027711, intron 17 of 35)",-17015,NM_010170,14064,Mm.440952,NM_010170,ENSMUSG00000021675,F2rl2,F730031A08|PAR3,coagulation factor II (thrombin) receptor-like 2,protein-coding,54.61,98.99,62.6,50.91,0.81,0.51,0.51,1.26,364.09,374.38,404.61,190.21,19.36,53,0,22.47,120.21,137.99,3.35,3.26,2.27,891.1,1042.69,489.04,877.18,971.87,50.26,30.54,24,21.47,27.87,High basal,5.93493016810834,0.485918627655982,6.36986484401952,1.88079802882697
Merged-chr11-3159839-3,chr11,3159675,3159980,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 10 of 32)",MTD|LTR|ERVL-MaLR,33636,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,95.98,62.79,90.87,74.22,0,0.51,0,0.32,0,0,0,0,0,0,0,0,121.53,182.47,110.67,129.56,189.63,0,0,0,0,0,0,0,0,0,0,High basal,6.24115066279084,0,6.57692594634764,6.97866987586742
Merged-chr11-3173889-8,chr11,3173498,3174218,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 6 of 32)",B1_Mus2|SINE|Alu,19605,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,448.86,326.13,414.63,183.4,68.66,89.97,99.21,65.22,0,0,0,0,0,0,0,0,384.41,510.91,243.14,345.07,400.41,0,0,0,0,0,0,0,0,0,0,High basal,8.25083971507413,6.06310508883693,8.14018890914459,8.1810032922587
Merged-chr5-132426040-2,chr5,132425891,132426189,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_177047, intron 1 of 19)",ORR1E|LTR|ERVL-MaLR,116303,NM_177047,319974,Mm.409595,NM_177047,ENSMUSG00000029673,Auts2,2700063G02Rik|A730011F23Rik|D830032G16Rik,autism susceptibility candidate 2,protein-coding,35.99,20.5,18.85,28.3,0.81,1.01,1.01,0.95,0,0,0,0,0,0,0,0,65.39,83.25,2.79,3.26,6.8,0,0,0,0,0,0,0,0,0,0,High basal,4.60629697392909,0.771394425125667,5.579043053529,2.19369681495146
Merged-chr2-165477354-1,chr2,165477229,165477480,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4157,NM_054055,114644,Mm.250738,NM_054055,ENSMUSG00000018459,Slc13a3,NaDC-3|NaDC3|SDCT2,"solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3",protein-coding,0,0,0.67,0,1.41,2.02,5.06,0.63,0,0,0,0,0,0,0,0,0.66,0,7.83,42.32,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,0.19133137392556,1.31912709215735,0.281847352415252,4.47260625977806
Merged-chr16-44120317-4,chr16,44120194,44120450,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007508, intron 1 of 14)","intron (NM_007508, intron 1 of 14)",18937,NM_001358203,11964,Mm.217787,NM_007508,ENSMUSG00000052459,Atp6v1a,AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2,"ATPase, H+ transporting, lysosomal V1 subunit A",protein-coding,26.48,21.46,27.6,26.55,18.38,24.26,19.74,17.01,0,0,0,0,0,0,0,0,57.46,69.57,24.03,48.18,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.62366942397401,4.10241796626957,5.36134354155174,5.13386121550157
Merged-chr2-168541408-4,chr2,168541038,168541606,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001037177, intron 3 of 6)","intron (NM_001037177, intron 3 of 6)",49043,NM_001291178,18019,Mm.116802,NM_010899,ENSMUSG00000027544,Nfatc2,AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp,"nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2",protein-coding,73.22,91.3,60.58,72.82,37.97,24.77,67.32,38.44,0,0,0,0,0,0,0,0,112.95,128.87,41.36,136.07,99.73,0,0,0,0,0,0,0,0,0,0,High basal,6.12339887641329,5.06925750775169,6.27673550981152,6.22813420158171
Merged-chr11-3181568-4,chr11,3181264,3181873,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 4 of 32)","intron (NM_030207, intron 4 of 32)",11895,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,88.94,75.29,75.05,58.88,13.13,4.04,7.59,8.19,0,0,0,0,0,0,0,0,76.62,142.55,88.87,92.45,143.54,0,0,0,0,0,0,0,0,0,0,High basal,6.12367773068384,2.85649881882332,6.0727700881119,6.58087741135854
Merged-chrM-13602-4,chrM,13338,13880,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,2436.67,1949.1,2030.09,532.05,0,0,0,0,0,0,0,0,0,0,0,0,1855.36,2928.63,1509.12,1780.03,2005.09,0,0,0,0,0,0,0,0,0,0,High basal,10.4595554849252,0,10.5310658027399,10.6185717218945
Merged-chr14-120453262-4,chr14,120453081,120453444,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx9|LINE|L1,-25199,NM_029519,76108,Mm.261448,NM_029519,ENSMUSG00000051615,Rap2a,5830461H18Rik,RAS related protein 2a,protein-coding,49.64,49.34,39.38,24.8,40.79,30.83,59.73,16.7,0,0,0,0,0,0,0,0,84.54,111.76,42.48,85.94,137.5,0,0,0,0,0,0,0,0,0,0,Equal basal,5.23596167264383,4.83543378630382,5.96951552663605,6.17503481098093
Merged-chr13-45912056-4,chr13,45911897,45912248,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001199304, intron 2 of 6)","intron (NM_001199304, intron 2 of 6)",52919,NM_001199304,20238,Mm.342683,NM_009124,ENSMUSG00000046876,Atxn1,2900016G23Rik|Atx1|C85907|Gm10786|Sca1,ataxin 1,protein-coding,32.27,46.13,27.93,24.18,21.41,38.41,43.53,28.36,0,0,0,22.82,4.84,0,0,0,71.33,94.66,27.39,83.34,102.75,0,0,0,0,0,0,0,0,0,0,Equal basal,4.93223040267248,4.77396738614506,5.73133068022709,5.81538630784491
Merged-chr15-59759820-4,chr15,59759658,59759965,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,35148,NR_045076,100503021,Mm.402924,NR_045076,ENSMUSG00000115426,Gm19510,-,"predicted gene, 19510",ncRNA,71.57,57.67,52.84,39.08,37.56,69.24,72.89,47.58,0,0,0,0,0,0,0,0,120.21,148.26,77.69,155.61,145.81,0,0,0,0,0,0,0,0,0,0,Equal basal,5.68299890084231,5.53361396211061,6.4209742903626,6.77184708791792
Merged-chr11-3157958-3,chr11,3157829,3158085,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 10 of 32)","intron (NM_030207, intron 10 of 32)",33936,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,178.3,160.18,132.27,80.35,2.63,5.56,1.01,2.52,0,27.06,0,0,0,0,0,0,104.36,104.92,83.28,92.45,122.39,0,0,0,0,0,0,0,0,0,0,High basal,6.95712058880846,1.63883007962251,6.07437097358429,6.47405882245212
Merged-chr6-100416225-4,chr6,100416043,100416400,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,(CA)n|Simple_repeat|Simple_repeat,-111179,NR_040525,73395,Mm.69413,NR_040525,ENSMUSG00000101553,1700049E22Rik,-,RIKEN cDNA 1700049E22 gene,ncRNA,27.3,32.04,38.03,44.43,34.94,27.8,41,26.78,0,0,0,0,0,0,0,0,77.28,112.9,22.92,98.31,120.88,0,0,0,0,0,0,0,0,0,0,Equal basal,5.06748210637748,4.7724355973929,5.91299554311789,5.88754571170373
Merged-chr15-27702871-4,chr15,27702725,27703074,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-21357,NM_001242423,223433,Mm.266485,NM_198301,ENSMUSG00000056069,Fam105a,9830126M18,"family with sequence similarity 105, member A",protein-coding,71.57,33.32,54.86,73.87,49.88,39.93,67.32,43.17,0,0,0,0,0,0,0,0,114.93,118.61,59.81,117.84,122.39,0,0,0,0,0,0,0,0,0,0,Equal basal,5.72845367644532,5.37020471514052,6.23011982287787,6.43167625401597
Merged-chr5-95918654-3,chr5,95918511,95918788,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-38290,NM_018866,55985,Mm.10116,NM_018866,ENSMUSG00000023078,Cxcl13,4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13,chemokine (C-X-C motif) ligand 13,protein-coding,33.1,19.22,24.57,22.17,6.06,8.59,10.63,6.93,0,0,0,0,0,0,0,0,27.08,70.71,6.15,41.02,55.15,0,0,0,0,0,0,0,0,0,0,High basal,4.56093111794492,2.88067054623927,4.84884037603787,4.51123179818127
Merged-chr14-68672014-4,chr14,68671839,68672204,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-16179,NM_183366,13522,Mm.117450,NM_010082,ENSMUSG00000014725,Adam28,C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII,a disintegrin and metallopeptidase domain 28,protein-coding,35.16,69.84,43.75,32.07,37.36,37.91,27.33,9.77,0,0,0,0,0,0,0,0,99.08,132.29,22.36,79.43,127.68,0,0,0,0,0,0,0,0,0,0,Equal basal,5.36442004422088,4.41943154438397,6.20208220079012,5.8010196167545
Merged-chr11-3153179-3,chr11,3152969,3153330,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)","intron (NM_030207, intron 14 of 32)",29128,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,61.23,66,66.64,44.78,0.4,2.02,1.01,0.95,0,0,0,0,0,0,0,0,59.45,79.83,56.45,69.01,122.39,0,0,0,0,0,0,0,0,0,0,High basal,5.80924815839512,0.830254759031453,5.48216511371326,6.15073658047961
Merged-chr11-3164536-3,chr11,3164407,3164672,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)","intron (NM_030207, intron 9 of 32)",28924,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,55.85,50.3,39.38,47.32,0.4,1.01,1.01,1.26,0,0,0,0,0,0,0,0,78.6,92.38,93.9,126.31,150.34,0,0,0,0,0,0,0,0,0,0,High basal,5.5067321861128,0.81795411357619,5.78276508180697,6.77741227385244
Merged-chr17-50182631-4,chr17,50182452,50182831,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_181397, intron 1 of 9)","intron (NM_181397, intron 1 of 9)",7856,NM_181397,76438,Mm.41854,NM_181397,ENSMUSG00000039316,Rftn1,2310015N21Rik|AI853526,raftlin lipid raft linker 1,protein-coding,34.75,60.87,54.86,54.85,45.44,36.9,37.96,38.12,0,0,0,0,0,0,0,0,118.23,133.43,33.54,98.31,123.9,0,0,0,0,0,0,0,0,0,0,Equal basal,5.5823645877995,5.06249843937023,6.33408075628551,6.07771328935291
Merged-chr17-43553984-3,chr17,43553781,43554151,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L2|LINE|L2,-10327,NM_001254953,100043332,Mm.17626,NM_001254953,ENSMUSG00000096140,Ankrd66,AU041848|D730048J04Rik|Gm4368,ankyrin repeat domain 66,protein-coding,24.41,26.91,24.9,28.04,6.26,8.59,4.05,5.99,0,0,0,0,0,0,0,0,37.65,41.06,7.83,25.39,36.26,0,0,0,0,0,0,0,0,0,0,High basal,4.65698303688572,2.54981976508149,4.69728626413257,4.19954155340204
Merged-chr3-118070338-4,chr3,118070133,118070500,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-201380,NM_029655,76561,Mm.33824,NM_029655,ENSMUSG00000028007,Snx7,2510028H01Rik,sorting nexin 7,protein-coding,56.26,53.18,105,88.41,53.72,37.91,64.79,28.67,0,0,0,0,0,0,0,0,163.15,207.56,59.25,112.64,119.37,0,0,0,0,0,0,0,0,0,0,Equal basal,6.10672789229048,5.22337906883769,6.8793390833955,6.39384259745677
Merged-chr11-3147489-3,chr11,3147332,3147638,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)",RMER4B|LTR|ERVK,23464,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,111.28,87.14,107.36,55.73,4.64,6.57,1.01,3.47,0,0,0,0,0,0,0,0,53.5,98.08,56.45,57.29,79.33,0,0,0,0,0,0,0,0,0,0,High basal,6.36615628535164,1.90974840594667,5.5535095239866,5.85759680516962
Merged-chr11-3147066-3,chr11,3146942,3147223,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)",B3|SINE|B2,23061,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,102.18,74.65,105.68,55.73,1.01,4.04,0,1.89,0,0,0,0,0,0,0,0,67.37,91.23,76.57,121.75,159.41,0,0,0,0,0,0,0,0,0,0,High basal,6.27450946218335,1.108114691307,5.66485397909694,6.69056043847718
Merged-chrM-3155-3,chrM,2793,3388,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,NA,Intergenic,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,2689.85,2148.69,2240.44,633.43,0,0,0,0,0,0,0,0,0,0,0,0,2272.8,3672.2,1872.43,2194.76,2493.89,0,0,0,0,0,0,0,0,0,0,High basal,10.6285137806418,0,10.840470927944,10.9277579610484
Merged-chr5-29854607-4,chr5,29854437,29854805,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-118685,NR_028426,332993,Mm.473746,NR_028426,NA,Gm5129,EG332993,predicted gene 5129,ncRNA,45.09,38.44,55.87,65.1,43.22,44.48,48.59,40.33,0,0,0,0,0,0,0,0,95.77,158.52,49.19,115.89,117.86,0,0,0,0,0,0,0,0,0,0,Equal basal,5.57760245912103,5.23025265680126,6.30684661815465,6.31302277880553
Merged-chr11-3175298-3,chr11,3175111,3175707,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 6 of 32)",MLTR31F_MM|LTR|ERVK,18054,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,82.33,79.13,96.25,38.73,1.01,4.04,1.01,0.95,17.22,31.57,4.55,3.8,2.42,0,0,3.75,50.2,76.41,56.45,52.09,66.48,15.77,0,21.11,0,0,0,0,3.43,0,0,High basal,6.05627231156063,1.08232436731496,5.33232877147044,5.72957233256357
Merged-chr16-92433652-6,chr16,92433300,92433942,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081549, intron 1 of 3)","intron (NM_001081549, intron 1 of 3)",32548,NM_001081549,54720,Mm.265744,NM_019466,ENSMUSG00000022951,Rcan1,Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1,regulator of calcineurin 1,protein-coding,50.06,144.16,68.99,71.41,58.36,79.86,82,30.25,0,0,0,0,0,0,0,0,145.31,245.19,51.98,169.28,194.16,0,0,0,0,0,0,0,0,0,0,Equal basal,6.18967538270981,5.62478074997442,6.91582565812966,6.7574922504692
Merged-chr2-131106155-6,chr2,131105997,131106313,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-19390,NM_011426,20612,Mm.1374,NM_011426,ENSMUSG00000027322,Siglec1,Cd169|Siglec-1|Sn,"sialic acid binding Ig-like lectin 1, sialoadhesin",protein-coding,23.17,27.23,35.67,23.22,5.25,2.02,3.04,2.84,130.38,135.32,177.3,110.32,43.56,48.58,13.3,74.91,39.63,77.55,5.59,20.83,25.69,733.39,804.49,221.65,581.13,744.86,378.86,296.66,168,232.6,404.12,High basal,4.70379922954882,1.81876299787932,5.17738751073539,3.80550162144227
Merged-chr1-39714187-4,chr1,39714021,39714328,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001145660, intron 2 of 14)","intron (NM_001145660, intron 2 of 14)",6815,NM_001145660,619289,Mm.334107,NM_001145660,ENSMUSG00000057173,Rfx8,4933400N17Rik,regulatory factor X 8,protein-coding,40.13,44.53,47.12,33.38,26.25,25.78,53.66,16.07,0,0,0,0,0,0,0,0,97.75,116.32,25.15,90.5,99.73,0,0,0,0,0,0,0,0,0,0,Equal basal,5.28897279357966,4.56850399583482,6.10108263351188,5.80042760560059
Merged-chr13-37633155-4,chr13,37632977,37633307,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-192896,NM_026830,68750,Mm.491109,NM_026830,ENSMUSG00000039087,Rreb1,1110037N09Rik|AA414966|B930013M22Rik,ras responsive element binding protein 1,protein-coding,40.54,43.89,37.69,38.12,43.42,24.77,39.99,25.84,0,0,0,0,0,0,0,0,72.66,90.09,30.74,112.64,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,5.25895210213116,4.79088644188905,5.70936896056213,5.92892110849692
Merged-chr11-3147985-1,chr11,3147872,3148099,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)",B3A|SINE|B2,23964,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,14.89,10.89,13.8,11.74,0,1.01,1.01,0,0,0,0,0,0,0,0,0,7.27,14.83,23.48,19.53,24.18,0,0,0,0,0,0,0,0,0,0,High basal,3.68275486324062,0.408684610727611,2.92706732122969,4.39503601521547
Merged-chr4-141182150-4,chr4,141181974,141182314,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172518, intron 4 of 9)","intron (NM_172518, intron 4 of 9)",-31812,NM_001081174,76166,Mm.271064,NM_001081174,ENSMUSG00000073733,Rsg1,6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo,REM2 and RAB-like small GTPase 1,protein-coding,58.74,42.61,50.15,41.1,55.33,42.96,65.81,28.36,0,0,0,0,0,0,0,0,73.98,76.41,43.6,131.52,113.32,0,0,0,0,0,0,0,0,0,0,Equal basal,5.50405864579804,5.28365863425597,5.60580474225936,6.29745505849835
Merged-chr15-6390853-4,chr15,6390606,6391032,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001037905, intron 1 of 13)","intron (NM_001037905, intron 1 of 13)",4071,NM_001310446,13132,Mm.240830,NM_023118,ENSMUSG00000022150,Dab2,5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96,"disabled 2, mitogen-responsive phosphoprotein",protein-coding,57.92,26.91,52.17,57.22,31.3,37.91,38.98,25.21,0,0,0,0,0,0,0,0,116.91,136.85,29.06,85.94,126.92,0,0,0,0,0,0,0,0,0,0,Equal basal,5.47262922868291,4.80874907771122,6.34409282556645,5.95816410006204
Merged-chr7-101027806-4,chr7,101027669,101027967,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15765,NM_001302346,18442,Mm.3000,NM_008773,ENSMUSG00000032860,P2ry2,P2U1|P2Y2,"purinergic receptor P2Y, G-protein coupled 2",protein-coding,40.13,63.11,34.67,44.86,48.47,44.98,42.01,33.4,0,0,0,0,0,0,0,0,83.22,133.43,38.57,108.08,121.63,0,0,0,0,0,0,0,0,0,0,Equal basal,5.40592328425163,5.14905491395474,6.08430926125851,6.17978857544477
Merged-chr11-3156953-4,chr11,3156633,3157182,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 11 of 32)","intron (NM_030207, intron 11 of 32)",32886,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,349.99,307.55,336.89,199.43,5.25,0,3.54,4.1,0,0,0,0,0,0,0,0,239.1,301.07,239.22,254.57,330.91,0,0,0,0,0,0,0,0,0,0,High basal,8.09578472504783,1.57629878835829,7.41952366221931,7.93628183180019
Merged-chr10-13837864-10,chr10,13837612,13838046,+,999.590027,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_025446, intron 1 of 5)","intron (NM_025446, intron 1 of 5)",31128,NM_025446,66253,Mm.45755,NM_025446,ENSMUSG00000019806,Aig1,1500031O19Rik|AV064870|AW413422|CGI-103,androgen-induced 1,protein-coding,153.48,137.44,157.17,119.96,79.36,69.24,90.1,56.71,228.79,410.47,381.88,258.68,166.97,141.32,252.63,187.28,210.04,283.97,69.87,203.79,240.25,662.41,638.2,422.19,584.79,759.05,680.41,658.77,315.42,611.91,843.08,High basal,7.05272247067116,5.93579702588847,7.28467732712969,7.08832837275665
Merged-chr6-32479367-4,chr6,32479120,32479572,+,999.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_175750, intron 3 of 31)","intron (NM_175750, intron 3 of 31)",-31795,NR_040277,319849,Mm.440860,NR_040277,ENSMUSG00000086763,Plxna4os1,B230378P21Rik,"plexin A4, opposite strand 1",ncRNA,72.81,80.41,47.12,53.1,37.56,60.65,48.59,23,0,0,0,0,0,0,0,0,139.37,195.01,30.74,106.12,135.99,0,0,0,0,0,0,0,0,0,0,Equal basal,5.87742893299637,5.08924381184307,6.72216535736223,6.11736766933414
Merged-chr13-64398286-6,chr13,64398068,64398506,+,999.483337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-27767,NM_009984,13039,Mm.930,NM_009984,ENSMUSG00000021477,Ctsl,1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt,cathepsin L,protein-coding,55.85,48.7,41.4,41.27,25.85,35.89,31.38,20.8,78.72,27.06,27.28,22.82,36.3,61.83,26.59,123.61,99.74,109.48,27.39,88.55,83.1,264.18,251.68,182.95,171.78,283.76,301.54,283.57,116.57,254.07,313.54,Equal basal,5.46642677613189,4.58842785079238,6.07231330264329,5.74363577735148
Merged-chr13-60877514-4,chr13,60877302,60877753,+,999.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,URR1B|DNA|hAT-Charlie,-13111,NM_178098,214639,Mm.19839,NM_178098,ENSMUSG00000050345,4930486L24Rik,AW545031,RIKEN cDNA 4930486L24 gene,protein-coding,22.34,44.53,39.71,23.04,51.7,32.35,32.4,7.88,0,0,0,0,0,0,0,0,78.6,112.9,51.98,72.27,129.19,0,0,0,0,0,0,0,0,0,0,Equal basal,4.89952810614957,4.47028380258467,5.92500908600621,6.15903642794037
Merged-chr12-54404322-4,chr12,54404155,54404519,+,998.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx8|LINE|L1,-13019,NR_033689,665239,Mm.26856,NR_033689,NA,Gm7550,EG665239|Gm666,predicted gene 7550,ncRNA,18.62,17.94,14.14,26.2,24.64,24.77,26.32,20.17,0,0,0,0,0,0,0,0,59.45,52.46,29.62,67.06,58.17,0,0,0,0,0,0,0,0,0,0,Equal basal,4.20464552321797,4.37031528467526,5.1875500505246,5.48104184516941
Merged-chr14-45107211-4,chr14,45107038,45107394,+,998.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,112209,NM_172597,70561,Mm.28129,NM_172597,ENSMUSG00000021830,Txndc16,5730420B22Rik|C77647,thioredoxin domain containing 16,protein-coding,26.89,39.4,53.18,46.18,31.1,19.71,46.57,35.92,0,0,0,0,0,0,0,0,98.42,143.69,38.01,82.03,106.52,0,0,0,0,0,0,0,0,0,0,Equal basal,5.26140315674481,4.76942197672721,6.25620481323965,5.97917416282355
Merged-chr15-66812705-4,chr15,66812559,66812849,+,998.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"5' UTR (NM_009192, exon 2 of 9)","5' UTR (NM_009192, exon 2 of 9)",19125,NM_001029841,20491,Mm.7601,NM_009192,ENSMUSG00000022372,Sla,Slap|Slap-1,src-like adaptor,protein-coding,35.58,30.43,26.92,26.46,20.6,28.81,19.24,16.7,0,0,0,0,0,0,0,0,50.86,49.04,24.59,53.39,46.09,0,0,0,0,0,0,0,0,0,0,Equal basal,4.83976821171404,4.18496088384862,5.03079558282506,5.17765280922438
Merged-chr3-148805933-4,chr3,148805743,148806085,+,997.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,148721,NM_001081298,99633,Mm.9776,NM_001081298,ENSMUSG00000028184,Adgrl2,AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786,adhesion G protein-coupled receptor L2,protein-coding,25.65,26.91,23.22,24.97,39.58,28.81,35.43,18.27,0,0,0,0,0,0,0,0,44.25,99.22,25.71,77.48,79.33,0,0,0,0,0,0,0,0,0,0,Equal basal,4.60927906957264,4.65594901985566,5.42860381359233,5.62887884430991
Merged-chr18-46408193-4,chr18,46408045,46408357,+,997.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,57615,NR_045438,72076,Mm.82766,NM_028086,NA,Mospd4,2010013H21Rik,motile sperm domain containing 4,pseudo,42.61,37.8,61.59,58.09,32.11,18.7,79.98,25.21,0,0,0,0,0,0,0,0,91.81,108.34,51.98,71.62,104.26,0,0,0,0,0,0,0,0,0,0,Equal basal,5.54381551646893,4.82645951979052,6.00600115537139,6.05292428187071
Merged-chr16-17410411-4,chr16,17410248,17410578,+,997.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_023348, intron 1 of 4)","intron (NM_023348, intron 1 of 4)",-4099,NM_001001983,224020,Mm.5718,NM_001001983,ENSMUSG00000041720,Pi4ka,Pik4ca,phosphatidylinositol 4-kinase alpha,protein-coding,33.51,39.4,41.4,34,18.98,26.79,26.83,15.12,0,0,0,0,0,0,0,0,59.45,69.57,31.3,55.99,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,5.14066260452802,4.21061775779321,5.38523355774503,5.54026367636162
Merged-chr13-99100664-4,chr13,99100470,99100822,+,997.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-12725,NR_045495,69603,Mm.390632,NR_045495,ENSMUSG00000100410,2310020H05Rik,-,RIKEN cDNA 2310020H05 gene,ncRNA,51.3,29.79,31.97,45.56,21.41,38.92,38.98,28.36,0,0,0,0,0,0,0,0,97.75,103.78,34.1,64.46,109.55,0,0,0,0,0,0,0,0,0,0,Equal basal,5.20741461118898,4.73092883289785,6.0200937871637,5.82734844394922
Merged-chr14-105779510-3,chr14,105779340,105779659,+,997,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,117320,NM_011897,24064,Mm.89982,NM_011897,ENSMUSG00000022114,Spry2,sprouty2,sprouty RTK signaling antagonist 2,protein-coding,19.86,21.14,17.84,26.02,8.89,7.08,13.67,6.62,0,0,0,0,0,0,0,0,36.99,46.76,8.38,21.49,27.2,0,0,0,0,0,0,0,0,0,0,High basal,4.36044415331114,3.01011678647338,4.77508640372771,4.02175101406925
Merged-chr12-84847713-4,chr12,84847569,84847859,+,996.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013589, intron 3 of 34)","intron (NM_013589, intron 3 of 34)",-28088,NR_028577,100303738,Mm.479389,NR_028577,ENSMUSG00000092130,D030025P21Rik,-,RIKEN cDNA D030025P21 gene,ncRNA,23.99,37.48,34.33,17.88,22.62,22.74,27.84,13.55,0,0,0,0,0,0,0,0,56.8,72.99,27.95,65.76,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.72620426611051,4.18036157145233,5.38697970283381,5.41298441272014
Merged-chr3-152122250-2,chr3,152122082,152122446,+,996.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_016867, intron 3 of 5)","intron (NM_016867, intron 3 of 5)",43636,NM_016867,54120,Mm.97,NM_016867,ENSMUSG00000039131,Gipc2,2200002N01Rik|AU021850|Semcap2,"GIPC PDZ domain containing family, member 2",protein-coding,17.38,26.27,15.82,22.08,0.4,3.03,4.05,1.58,0,0,0,0,0,0,0,0,65.39,52.46,3.91,14.97,41.55,0,0,0,0,0,0,0,0,0,0,High basal,4.29221696932716,1.34002690573988,5.25481071315481,3.73078658805799
Merged-chr3-27439844-4,chr3,27439691,27439998,+,996.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001356953, intron 24 of 26)","intron (NM_001356953, intron 24 of 26)",68493,NM_177330,208188,Mm.194721,NM_177330,ENSMUSG00000051136,Ghsr,C530020I22Rik|GHRP|GHS-R|Ghsr1a,growth hormone secretagogue receptor,protein-coding,35.58,30.11,52.84,48.98,26.66,27.8,32.9,12.92,0,0,0,0,0,0,0,0,92.47,92.38,36.33,57.95,64.97,0,0,0,0,0,0,0,0,0,0,High basal,5.28960975603695,4.34900960895568,5.89812611630796,5.56022072273869
Merged-chrX-159650830-4,chrX,159650615,159651156,+,995.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001135727, intron 1 of 17)","intron (NM_001135727, intron 1 of 17)",23613,NM_001135727,58194,Mm.286495,NM_021389,ENSMUSG00000040990,Sh3kbp1,1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta,SH3-domain kinase binding protein 1,protein-coding,43.85,56.38,61.25,54.94,37.16,23.25,36.45,7.25,0,0,0,0,0,0,0,0,68.69,101.5,21.8,51.43,93.68,0,0,0,0,0,0,0,0,0,0,High basal,5.67815958616212,4.25343747559584,5.75407334936038,5.4375877526847
Merged-chr9-65200777-4,chr9,65200644,65200941,+,995.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B3|SINE|B2,-13898,NM_177460,214424,Mm.31129,NM_177460,ENSMUSG00000032392,Parp16,ARTD15|BC055447|C79952|PARP-16,"poly (ADP-ribose) polymerase family, member 16",protein-coding,25.65,27.23,18.85,14.02,17.77,30.83,21.77,17.33,0,0,0,0,0,0,0,0,53.5,65,18.44,59.9,53.64,0,0,0,0,0,0,0,0,0,0,Equal basal,4.34649718592332,4.20556249255409,5.26340132322053,5.16886947539241
Merged-chr4-134758677-4,chr4,134758510,134758832,+,995.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145554, intron 2 of 8)","intron (NM_145554, intron 2 of 8)",9333,NM_145554,100017,Mm.27486,NM_145554,ENSMUSG00000037295,Ldlrap1,AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2,low density lipoprotein receptor adaptor protein 1,protein-coding,21.93,31.72,18.17,25.59,16.76,22.24,24.3,22.37,0,0,0,0,0,0,0,0,55.48,65,28.51,57.95,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.5324010737616804,4.20959788552929,5.28898617391062,5.25364490591968
Merged-chr18-39140745-4,chr18,39140591,39140892,+,994.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001361073, intron 10 of 21)","intron (NM_001361073, intron 10 of 21)",147596,NM_175164,71302,Mm.329396,NM_175164,ENSMUSG00000036452,Arhgap26,1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621,Rho GTPase activating protein 26,protein-coding,22.34,16.02,16.83,31.11,16.56,24.77,32.9,15.44,0,0,0,0,0,0,0,0,40.95,61.58,21.8,43.62,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,4.35548305744233,4.20847465873956,5.03819518148983,5.19320076383267
Merged-chr2-153275135-4,chr2,153274992,153275279,+,994.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B4A|SINE|B4,-16281,NM_008444,16569,Mm.315560,NM_008444,ENSMUSG00000027475,Kif3b,AI854312|AW549267|mKIAA0359,kinesin family member 3B,protein-coding,20.27,22.11,36.01,23.83,22.42,18.7,31.38,15.44,0,0,0,0,0,0,0,0,40.29,43.34,18.44,52.74,78.57,0,0,0,0,0,0,0,0,0,0,Equal basal,4.58855730247854,4.19861434286583,4.78193954710586,5.28859226084307
Merged-chr8-106007328-3,chr8,106007179,106007555,+,994.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR19|LTR|ERVK,-4111,NM_025518,66369,Mm.287500,NM_025518,ENSMUSG00000031901,Dus2,2310016K04Rik|Dus2l,dihydrouridine synthase 2,protein-coding,23.17,18.26,14.14,4.73,5.65,3.03,2.53,7.56,0,0,0,0,0,0,0,0,40.95,42.2,3.35,35.81,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.72889743970402,2.17242173668348,4.77482260434934,3.9616141294598
Merged-chr18-73745149-8,chr18,73744923,73745314,+,994.4375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_053255, intron 2 of 3)","intron (NM_053255, intron 2 of 3)",9361,NM_053255,114615,Mm.50642,NM_053255,ENSMUSG00000036941,Elac1,2610018O07Rik|8430417G19Rik,elaC ribonuclease Z 1,protein-coding,79.43,59.59,56.88,68.61,57.76,55.09,60.24,43.48,105.78,243.58,154.57,102.71,133.09,238.48,146.26,131.1,118.89,173.35,37.45,144.54,197.18,567.78,660.67,383.49,508.03,900.93,792.52,916.17,606.85,647.69,1184.49,Equal basal,5.95842454817363,5.50327651088655,6.52462188304247,6.53438571388481
Merged-chr11-44390225-6,chr11,44389960,44390413,+,994,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9877,NM_001303244,16160,Mm.239707,NM_008352,ENSMUSG00000004296,Il12b,Il-12b|Il-12p40|Il12p40|p40,interleukin 12b,protein-coding,35.99,109.24,41.06,29.27,48.47,86.43,61.25,21.11,66.42,31.57,9.09,41.85,58.08,26.5,17.73,74.91,136.06,173.35,50.86,188.16,213.05,323.32,274.16,182.95,310.67,297.94,378.86,235.59,260.57,314.9,466.83,Equal basal,5.47650591319963,5.35024804158821,6.62089894658422,6.84198634810952
Merged-chr8-79058704-4,chr8,79058522,79058901,+,993.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001294279, intron 1 of 14)","intron (NM_001294279, intron 1 of 14)",30274,NM_178267,622675,Mm.48724,NM_178267,ENSMUSG00000071064,Zfp827,2810449M09Rik|D630040G17Rik|Znf827,zinc finger protein 827,protein-coding,42.2,30.43,27.6,43.99,18.38,9.6,19.24,4.41,0,0,0,0,0,0,0,0,73.32,122.03,17.89,32.55,31.73,0,0,0,0,0,0,0,0,0,0,High basal,5.08596799783699,3.3383748246465,5.9309146418209,4.62624729442545
Merged-chr16-65201493-4,chr16,65201330,65201652,+,992.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-95707,NM_008310,15557,Mm.5040,NM_008310,ENSMUSG00000050783,Htr1f,Htr1eb,5-hydroxytryptamine (serotonin) receptor 1F,protein-coding,55.02,43.89,42.74,42.76,35.14,36.9,42.01,12.6,7.38,54.13,27.28,0,12.1,26.5,0,11.24,105.68,119.75,27.95,81.38,103.5,31.54,31.46,59.81,58.48,42.56,50.26,69.8,58.28,46.52,41.81,Equal basal,5.44658515513733,4.63043170993278,6.17716178978081,5.81710454832239
Merged-chr2-68438100-4,chr2,68437948,68438290,+,992.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_016866, intron 1 of 17)",Lx8b|LINE|L1,33862,NM_016866,53416,Mm.198414,NM_016866,ENSMUSG00000027030,Stk39,AW227544|AW556857|DCHT|RF005|Rnl5|SPAK,serine/threonine kinase 39,protein-coding,30.61,25.63,23.56,29.18,19.99,25.27,27.84,12.29,0,0,0,0,0,0,0,0,37.65,78.69,17.89,44.92,61.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.71805098220149,4.14522230189586,5.15195891797462,5.08156673190957
Merged-chrX-102032017-4,chrX,102031866,102032207,+,992.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001163610, intron 1 of 7)","intron (NM_001163610, intron 1 of 7)",39271,NM_001278534,331474,Mm.23297,NM_183318,ENSMUSG00000049191,Rtl5,6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001,retrotransposon Gag like 5,protein-coding,32.68,17.3,14.81,25.94,23.22,32.85,35.94,13.23,0,0,0,0,0,0,0,0,37.65,75.27,35.77,46.23,75.55,0,0,0,0,0,0,0,0,0,0,Equal basal,4.40303320227475,4.40506880229426,5.12062609049708,5.51803849684051
Merged-chr17-65662869-4,chr17,65662700,65663049,+,992.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133685, intron 6 of 6)",MIR|SINE|MIR,-20670,NM_001146002,213272,Mm.255732,NM_153519,ENSMUSG00000050612,Txndc2,AU021712|Sptrx-1|Sptrx1|Trx4,thioredoxin domain containing 2 (spermatozoa),protein-coding,24.41,44.21,36.01,34.17,32.31,31.84,25.31,13.55,0,0,0,0,0,0,0,0,73.98,95.8,26.83,73.57,84.62,0,0,0,0,0,0,0,0,0,0,Equal basal,5.02468387106488,4.39504310606375,5.7655535596828,5.65484648644917
Merged-chr18-73749580-3,chr18,73749444,73749727,+,992.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_053255, intron 1 of 3)","intron (NM_053255, intron 1 of 3)",4894,NM_053255,114615,Mm.50642,NM_053255,ENSMUSG00000036941,Elac1,2610018O07Rik|8430417G19Rik,elaC ribonuclease Z 1,protein-coding,9.1,15.7,19.18,23.4,8.28,6.57,19.24,6.3,0,0,0,0,0,0,0,0,43.59,51.32,13.97,31.25,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.98162151021345,3.05862107656483,4.95443108640575,4.74428625956802
Merged-chr2-180695366-6,chr2,180695154,180695528,+,991.727783,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001291432, intron 1 of 5)",Charlie1|DNA|hAT-Charlie,-3293,NR_111965,23856,Mm.253836,NM_011805,ENSMUSG00000038914,Dido1,6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido,death inducer-obliterator 1,protein-coding,68.26,78.17,49.14,64.32,39.98,36.9,44.55,33.4,73.8,76.68,45.46,72.28,55.66,39.75,4.43,56.19,122.85,126.59,43.6,89.2,95.95,236.58,256.18,161.84,303.36,212.82,197.16,200.68,54.86,171.76,236.9,Equal basal,5.92646081932767,5.0360282017174,6.32398262380771,6.03405624280477
Merged-chr8-106563760-4,chr8,106563627,106563906,+,991.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-23377,NR_045470,68692,Mm.416843,NR_045470,ENSMUSG00000099139,1110028F18Rik,-,RIKEN cDNA 1110028F18 gene,ncRNA,37.23,25.31,22.21,30.32,34.13,21.73,31.38,13.23,0,0,0,0,0,0,0,0,60.11,65,22.92,53.39,95.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.77168396893034,4.35154859516368,5.34537528403499,5.48968779494993
Merged-chr8-35123470-8,chr8,35123288,35123637,+,991.270813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-157772,NM_175091,21951,Mm.88364,NM_175091,ENSMUSG00000031529,Tnks,4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1,"tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase",protein-coding,19.03,12.49,18.17,22.96,22.01,27.8,44.55,26.15,140.22,175.92,45.46,106.52,244.4,132.49,230.47,243.47,38.97,53.6,47.51,88.55,128.43,619.04,683.14,341.27,694.43,319.23,1287.36,1435.33,545.13,1137.93,1114.82,Equal basal,4.13116244098797,4.63706048852796,4.90650769986918,6.2096953227893
Merged-chr10-51571401-4,chr10,51571267,51571531,+,991.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR26_Mus|LTR|ERVK,19061,NM_029894,77296,Mm.30588,NM_029894,ENSMUSG00000019909,Fam162b,9430073N08Rik,"family with sequence similarity 162, member B",protein-coding,18.2,16.02,17.5,17.88,10.3,8.09,18.22,13.23,0,0,0,0,0,0,0,0,31.04,39.92,19,28.65,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.10864281780455,3.4421083648082,4.54409192108856,4.54946112955786
Merged-chr8-35520604-2,chr8,35520481,35520714,+,990.833374,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-25064,NM_026067,67276,Mm.207534,NM_026067,ENSMUSG00000031527,Eri1,3'hexo|3110010F15Rik|Thex1|eri-1,exoribonuclease 1,protein-coding,0,0,0,0.53,2.42,2.53,0.51,2.21,0,0,0,0,0,0,8.86,3.75,0.66,0,4.47,26.69,55.91,11.83,35.95,17.59,7.31,7.09,65.72,165.78,51.43,171.76,20.9,Equal basal,0.146949029296737,1.13777716553205,0.281847352415252,4.18453377599457
Merged-chr3-108958139-4,chr3,108957947,108958280,+,990.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001078646, intron 6 of 7)","intron (NM_001078646, intron 6 of 7)",17556,NM_001078646,66715,Mm.158124,NM_025723,ENSMUSG00000045662,Henmt1,4921515J06Rik|Hen1|mHEN1,HEN1 methyltransferase homolog 1 (Arabidopsis),protein-coding,15.31,24.99,17.5,22.87,30.29,17.69,33.41,10.08,0,0,0,0,0,0,0,0,35.67,47.9,25.71,57.29,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,4.27552422701009,4.17131403132352,4.76656031857203,5.27540107225068
Merged-chr2-152788960-4,chr2,152788769,152789196,+,990.033325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009743, intron 2 of 2)","intron (NM_009743, intron 2 of 2)",34809,NM_053091,84682,Mm.196668,NM_053091,ENSMUSG00000009876,Cox4i2,Cox4b|CoxIV-2,cytochrome c oxidase subunit 4I2,protein-coding,36.41,18.9,23.56,30.58,31.91,50.04,37.96,16.38,0,0,0,0,0,0,0,0,54.82,51.32,30.74,72.27,95.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.68484225740855,4.75829922425512,5.11520053640943,5.76975770925921
Merged-chr11-23855560-4,chr11,23855392,23855708,+,989.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,39720,NM_172555,216578,Mm.470599,NM_172555,ENSMUSG00000020273,Papolg,9630006B20Rik,poly(A) polymerase gamma,protein-coding,19.44,19.54,17.5,18.66,21,16.17,25.82,8.51,0,0,0,0,0,0,0,0,37.65,67.29,15.65,42.97,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19854391477766,3.86202204483234,5.04174520377285,4.84302099541366
Merged-chr9-47745799-6,chr9,47745588,47746015,+,988.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001025600, intron 1 of 8)","intron (NM_001025600, intron 1 of 8)",72407,NR_046048,100038460,Mm.447649,NR_046048,NA,Gm10677,-,predicted gene 10677,ncRNA,40.96,57.67,43.75,43.9,8.89,20.72,3.54,7.88,115.62,193.96,136.39,148.36,24.2,26.5,53.19,0,79.92,88.95,6.71,36.46,38.53,386.41,332.58,239.24,219.29,340.51,231.96,205.05,92.57,139.56,209.03,High basal,5.46003398917869,2.9861948012123,5.76788762629285,4.32688134210147
Merged-chr6-137292592-3,chr6,137292391,137292792,+,988.555542,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011216, intron 1 of 26)","intron (NM_011216, intron 1 of 26)",40292,NM_001164401,19277,Mm.186361,NM_011216,ENSMUSG00000030223,Ptpro,D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O,"protein tyrosine phosphatase, receptor type, O",protein-coding,6.62,0.64,3.37,6.66,9.29,6.57,7.59,14.18,0,27.06,27.28,0,19.36,17.67,79.78,22.47,12.55,7.98,7.27,29.3,41.55,197.15,143.82,63.33,69.44,127.69,452.31,362.1,260.57,329.21,376.25,Equal basal,2.11892994184115,3.04216211434275,2.88850720710337,4.29575455763447
Merged-chr5-34536066-4,chr5,34535872,34536268,+,987.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011893, intron 1 of 12)","intron (NM_011893, intron 1 of 12)",-7295,NM_001145858,24055,Mm.5012,NM_011893,ENSMUSG00000054520,Sh3bp2,3BP2,SH3-domain binding protein 2,protein-coding,30.61,28.51,22.55,17.96,25.44,37.4,23.79,19.85,0,0,0,0,0,0,0,0,54.82,80.97,40.24,89.85,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56274277552523,4.47876147715644,5.43514699008453,5.79888270562241
Merged-chr13-37793104-6,chr13,37792915,37793287,+,986.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-32937,NM_026830,68750,Mm.491109,NM_026830,ENSMUSG00000039087,Rreb1,1110037N09Rik|AA414966|B930013M22Rik,ras responsive element binding protein 1,protein-coding,38.06,56.7,24.57,35.58,34.73,12.64,9.62,8.19,145.14,72.17,277.32,144.56,33.88,39.75,88.64,93.64,83.22,99.22,12.3,54.04,67.24,532.3,296.63,263.87,449.55,801.61,444.58,287.94,161.14,336.37,431.99,High basal,5.14984865216675,3.60462361950604,5.87389951425903,5.04059614848592
Merged-chr9-120043265-4,chr9,120043064,120043564,+,986.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-19716,NM_011724,22437,Mm.10117,NM_011724,ENSMUSG00000079243,Xirp1,AI415219|Cmya1,xin actin-binding repeat containing 1,protein-coding,87.29,68.56,75.39,53.98,39.18,69.24,49.61,16.7,0,0,0,0,0,0,0,0,138.05,191.59,25.71,100.92,154.88,0,0,0,0,0,0,0,0,0,0,Equal basal,6.05763217821335,5.04344981003146,6.70271325235126,6.07162370356165
Merged-chr5-107754945-4,chr5,107754767,107755085,+,985.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007964, intron 17 of 17)","intron (NM_007964, intron 17 of 17)",-29121,NM_001267621,14581,Mm.2078,NM_010278,ENSMUSG00000029275,Gfi1,AW495828|Gfi-1|Pal-1|Pal1,growth factor independent 1,protein-coding,28.55,49.66,29.28,15.33,35.95,35.38,25.82,18.59,0,0,0,0,0,0,0,0,67.37,86.67,27.95,76.18,101.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.76702476887752,4.58422762970256,5.62858731954711,5.77532662870559
Merged-chr6-70872295-4,chr6,70872113,70872464,+,985.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010121, intron 2 of 16)","intron (NM_010121, intron 2 of 16)",27773,NM_001313918,13666,Mm.247167,NM_010121,ENSMUSG00000031668,Eif2ak3,Pek|Perk,eukaryotic translation initiation factor 2 alpha kinase 3,protein-coding,28.55,48.05,17.5,24.71,28.88,25.27,18.73,16.38,0,0,0,0,0,0,0,0,62.75,106.06,15.09,62.5,77.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.74898389114208,4.24100852926987,5.72129973178832,5.2713966724933
Merged-chr6-134461330-9,chr6,134461093,134461580,+,984.722229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008514, intron 17 of 22)","intron (NM_008514, intron 17 of 22)",46908,NM_001355686,66813,Mm.474472,NM_025778,ENSMUSG00000030200,Bcl2l14,4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg,BCL2-like 14 (apoptosis facilitator),protein-coding,74.47,105.72,108.37,96.12,31.3,25.27,38.98,16.7,558.44,572.85,672.84,620.07,174.23,79.49,146.26,164.81,100.4,142.55,35.21,90.5,113.32,654.53,678.65,506.63,712.71,688.11,858.24,837.64,541.71,783.67,975.47,High basal,6.49118486568272,4.52410071284953,6.26471069082268,6.01903097068347
Merged-chr19-56756607-3,chr19,56756447,56756762,+,984.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,34232,NM_007419,11554,Mm.46797,NM_007419,ENSMUSG00000035283,Adrb1,Adrb-1|beta-AR,"adrenergic receptor, beta 1",protein-coding,15.72,25.31,27.6,31.11,9.49,7.08,11.14,5.67,0,0,0,0,0,0,0,0,45.57,87.81,12.86,37.76,46.84,0,0,0,0,0,0,0,0,0,0,High basal,4.55811889169723,2.93746891338747,5.36277578072812,4.72394707229304
Merged-chr15-30617087-4,chr15,30616936,30617239,+,984.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355502, intron 3 of 21)",MLT1B|LTR|ERVL-MaLR,-422039,NR_045186,73784,Mm.66947,NR_045186,ENSMUSG00000115474,4930430F21Rik,-,RIKEN cDNA 4930430F21 gene,ncRNA,18.62,21.46,18.17,25.32,20.8,13.65,20.25,15.12,0,0,0,0,0,0,0,0,67.37,51.32,21.24,41.02,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,4.33422339279239,3.91478741856339,5.26058268838368,5.07002099101999
Merged-chr3-108726617-4,chr3,108726445,108726792,+,983.9375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTE2a|LTR|ERVL-MaLR,-4319,NM_029522,76123,Mm.226941,NM_029522,ENSMUSG00000027883,Gpsm2,6230410J09Rik|LGN|Pins,"G-protein signalling modulator 2 (AGS3-like, C. elegans)",protein-coding,17.79,21.78,20.19,19.1,21.41,23.76,15.19,22.37,0,0,0,0,0,0,0,0,51.52,61.58,23.48,54.69,66.48,0,0,0,0,0,0,0,0,0,0,Equal basal,4.26897317230301,4.15402639804257,5.19895248483957,5.33897016136095
Merged-chr18-60638407-4,chr18,60638251,60638606,+,983.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-14123,NM_177340,104027,Mm.252321,NM_177340,ENSMUSG00000043079,Synpo,9030217H17Rik|9130229N11|9330140I15Rik|AW046661,synaptopodin,protein-coding,47.99,91.94,37.02,45.39,22.82,16.68,34.42,17.64,0,0,0,0,0,0,0,0,93.79,168.78,29.06,80.73,91.41,0,0,0,0,0,0,0,0,0,0,High basal,5.63731294172139,4.24959668113704,6.33674616933919,5.77285038888737
Merged-chr11-59902458-6,chr11,59902161,59902772,+,983.611084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-19033,NR_130986,69854,Mm.57859,NR_130986,ENSMUSG00000085551,1810063I02Rik,-,RIKEN cDNA 1810063I02 gene,ncRNA,77.77,69.2,53.51,61.16,46.25,39.42,48.59,35.6,0,0,0,0,0,0,0,0,95.77,201.86,31.86,105.47,166.21,0,0,0,0,0,0,0,0,0,0,Equal basal,5.94182019728004,5.16315412700451,6.47943929469359,6.22681582158261
Merged-chr6-108528183-4,chr6,108528031,108528337,+,983.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010585, intron 60 of 61)","intron (NM_010585, intron 60 of 61)",38441,NR_106121,102465766,NA,NR_106121,ENSMUSG00000105697,Mir7661,mmu-mir-7661,microRNA 7661,ncRNA,23.99,43.25,31.3,51.79,24.23,16.17,34.93,15.75,0,0,0,0,0,0,0,0,91.15,123.17,19,53.39,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,5.11036326280916,4.23442758588342,6.09196692611366,5.3515587889345
Merged-chr17-50666497-4,chr17,50666287,50666737,+,983.108337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_013880, intron 4 of 5)",MTC|LTR|ERVL-MaLR,-32169,NM_001297747,12228,Mm.392910,NM_009770,ENSMUSG00000022863,Btg3,ANA|tob5,B cell translocation gene 3,protein-coding,16.13,17.94,17.16,17,10.3,9.1,7.09,9.77,76.26,216.51,186.39,57.06,16.94,57.41,150.69,59.93,31.7,30.79,3.91,29.95,50.62,725.5,350.56,348.31,540.93,276.66,1090.19,667.49,414.85,586.86,1079.98,Equal basal,4.0667866746151,3.06656462281119,4.38059785941853,4.13611640986603
Merged-chr10-44553847-4,chr10,44553704,44553998,+,983,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLTR11B|LTR|ERVK,-95103,NM_007548,12142,Mm.4800,NM_007548,ENSMUSG00000038151,Prdm1,Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo,"PR domain containing 1, with ZNF domain",protein-coding,26.06,31.08,15.48,23.66,17.57,29.32,19.74,26.47,0,0,0,0,0,0,0,0,58.12,67.29,25.15,55.34,75.55,0,0,0,0,0,0,0,0,0,0,Equal basal,4.50399885630675,4.30514528433734,5.34596399231603,5.4369923216765
Merged-chr3-149083672-3,chr3,149083505,149083817,+,982.777771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-129026,NM_001081298,99633,Mm.9776,NM_001081298,ENSMUSG00000028184,Adgrl2,AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786,adhesion G protein-coupled receptor L2,protein-coding,34.34,26.59,36.35,39.26,12.92,9.1,8.61,8.82,0,0,0,0,0,0,0,0,70.67,116.32,16.77,28.65,57.42,0,0,0,0,0,0,0,0,0,0,High basal,5.01857149680075,3.16420011980595,5.87093144522986,4.81328596138294
Merged-chr2-163575544-4,chr2,163575357,163575756,+,982.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-26758,NM_181734,76080,Mm.89828,NM_029512,ENSMUSG00000017679,Ttpal,3110080A02Rik|5830472M02Rik,tocopherol (alpha) transfer protein-like,protein-coding,42.61,44.21,40.05,46.53,28.07,24.26,23.28,18.9,0,0,0,0,0,0,0,0,99.74,99.22,24.59,59.9,59.68,0,0,0,0,0,0,0,0,0,0,High basal,5.36681860778355,4.34868322732575,6.0025089279309,5.35272334719935
Merged-chr8-105384419-4,chr8,105384200,105384581,+,982.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001301173, intron 15 of 15)","intron (NM_001301173, intron 15 of 15)",9009,NM_001081333,102075,Mm.32034,NM_175321,ENSMUSG00000014782,Plekhg4,4931414L13Rik|AI448583|mFLJ00068,"pleckstrin homology domain containing, family G (with RhoGef domain) member 4",protein-coding,16.13,17.3,22.55,15.51,32.71,16.68,26.83,16.38,0,0,0,0,0,0,0,0,36.99,60.44,17.89,55.34,76.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.11687014299391,4.25900817200002,4.95419519755049,5.28316639837238
Merged-chr13-40971421-4,chr13,40971276,40971619,+,981.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_155347, intron 1 of 4)","intron (NR_155347, intron 1 of 4)",-29563,NM_026550,68083,Mm.24789,NM_026550,ENSMUSG00000038683,Pak1ip1,5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1,PAK1 interacting protein 1,protein-coding,50.06,66.32,28.94,33.3,42.61,48.02,30.37,19.85,0,0,0,0,0,0,0,0,94.45,114.04,35.21,85.29,120.12,0,0,0,0,0,0,0,0,0,0,Equal basal,5.33764571993387,4.83059415015269,6.06257812078245,6.01862835722892
Merged-chr9-121423913-3,chr9,121423733,121424061,+,981.666687,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357968, intron 1 of 14)","intron (NM_001357968, intron 1 of 14)",20451,NM_001357968,67095,Mm.491112,NM_175114,ENSMUSG00000032536,Trak1,2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042,"trafficking protein, kinesin binding 1",protein-coding,0,0,0,0,1.21,8.09,7.09,1.26,44.28,27.06,13.64,0,77.43,26.5,163.99,11.24,0,0,7.83,23.44,35.51,35.49,13.48,0,0,42.56,247.42,209.41,188.57,239.75,243.87,Low basal,0,1.92115330832209,0,4.15330549096517
Merged-chr13-41469716-4,chr13,41469586,41469849,+,981.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001111324, intron 1 of 7)","intron (NM_001111324, intron 1 of 7)",17643,NM_001111324,18003,Mm.288980,NM_017464,ENSMUSG00000021365,Nedd9,Cas-L|CasL|HEF1|MEF1|Nedd-9|p105,"neural precursor cell expressed, developmentally down-regulated gene 9",protein-coding,32.68,40.05,41.06,31.72,28.27,26.28,17.72,15.12,0,0,0,0,0,0,0,0,74.64,84.39,22.36,64.46,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,5.11328400520724,4.20331419734169,5.68221078383675,5.37162199487394
Merged-chr17-3080812-3,chr17,3080626,3080931,+,981,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_003519, intron 2 of 7)","intron (NR_003519, intron 2 of 7)",3405,NR_003519,328734,Mm.335641,NR_003519,NA,Pisd-ps2,D030013I16Rik,"phosphatidylserine decarboxylase, pseudogene 2",pseudo,40.13,31.4,33.66,21.03,1.21,0,0,0.63,0,0,0,0,0,0,0,0,35.01,31.93,18.44,28.65,46.84,0,0,0,0,0,0,0,0,0,0,High basal,4.89140881881084,0.425890332104166,4.4740398791209,4.76205746885209
Merged-chr8-14608060-6,chr8,14607886,14608218,+,980.722229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172910, intron 4 of 15)","intron (NM_172910, intron 4 of 15)",-280484,NM_012000,26889,Mm.254027,NM_012000,ENSMUSG00000026317,Cln8,mnd,"ceroid-lipofuscinosis, neuronal 8",protein-coding,52.54,36.52,61.93,56.34,8.28,5.05,15.19,5.99,95.94,108.26,209.12,232.05,84.69,0,44.32,7.49,124.18,161.94,11.74,67.06,74.79,898.99,1137.07,682.55,997.79,1255.62,761.59,807.1,565.71,701.37,1038.17,High basal,5.59921027965893,2.89318797979205,6.50706834586803,5.17125361012362
Merged-chr10-7264995-3,chr10,7264866,7265143,+,980.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-52767,NM_172546,215748,Mm.37984,NM_172546,ENSMUSG00000015202,Cnksr3,6820402C05|BC024086|Magi1,Cnksr family member 3,protein-coding,19.44,23.71,32.31,29.53,0.61,0,1.52,1.58,132.84,85.7,172.76,171.19,26.62,0,4.43,3.75,38.97,27.37,2.24,3.91,8.31,441.61,516.85,109.07,467.83,297.94,30.93,56.71,41.14,28.63,76.64,High basal,4.64161006068293,0.598355365184076,4.44379669287999,2.25527988477438
Merged-chr16-65416381-3,chr16,65415989,65416657,+,979.629639,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Lx7|LINE|L1,-104306,NM_008849,18736,Mm.355440,NM_008849,ENSMUSG00000004842,Pou1f1,GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf,"POU domain, class 1, transcription factor 1",protein-coding,1.65,0.64,1.35,1.58,6.06,8.09,3.04,7.56,17.22,27.06,0,49.45,33.88,53,17.73,37.46,2.64,4.56,12.3,108.08,145.81,335.15,184.27,109.07,142.54,602.98,1623.69,1553.12,956.56,1220.24,1560.75,Low basal,1.133274742591,2.56770272786325,1.68215452266348,5.7348816936701
Merged-chr1-194672005-4,chr1,194671868,194672213,+,979.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008882, intron 3 of 31)","intron (NM_008882, intron 3 of 31)",52211,NM_008882,18845,Mm.2251,NM_008882,ENSMUSG00000026640,Plxna2,2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463,plexin A2,protein-coding,37.23,29.15,35.34,55.29,31.71,19.71,22.78,11.97,0,0,0,0,0,0,0,0,74.64,117.46,28.51,46.88,46.09,0,0,0,0,0,0,0,0,0,0,High basal,5.19032955932783,4.14098277548864,5.91648357104403,5.18583866346885
Merged-chr12-105013250-4,chr12,105013036,105013483,+,979.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3450,NM_172500,212073,Mm.212688,NM_172500,ENSMUSG00000054150,Syne3,KASH3|nesprin-3,"spectrin repeat containing, nuclear envelope family member 3",protein-coding,42.61,61.83,61.25,47.49,28.68,21.73,33.41,17.33,0,0,0,0,0,0,0,0,115.59,140.27,24.03,67.06,98.21,0,0,0,0,0,0,0,0,0,0,High basal,5.64448604462783,4.40031776498872,6.35357557378089,5.63023259960954
Merged-chr17-67431050-4,chr17,67430898,67431196,+,979.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-76556,NM_001357625,19274,Mm.311809,NM_008984,ENSMUSG00000033278,Ptprm,RPTPmu|mKIAA4044,"protein tyrosine phosphatase, receptor type, M",protein-coding,21.51,26.91,19.86,26.64,19.39,21.73,18.73,8.51,0,0,0,0,0,0,0,0,46.9,52.46,20.12,45.57,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.51743745594784,3.81610460583201,5.02086854805691,5.06083657118659
Merged-chr11-3131539-2,chr11,3131388,3131742,+,978.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_030207),TTS (NM_030207),7544,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,8.27,19.22,26.25,14.55,0.2,0,1.52,0.63,0,0,0,0,0,0,0,0,10.57,30.79,21.8,20.83,18.89,0,0,0,0,0,0,0,0,0,0,High basal,3.98020840510981,0.37768619177606,3.64597945045352,4.27843997314423
Merged-chr9-40501648-8,chr9,40501471,40501860,+,978.1875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357617, intron 1 of 20)","intron (NM_001357617, intron 1 of 20)",29718,NM_001357617,235283,Mm.138434,NM_172768,ENSMUSG00000040111,Gramd1b,3222402H23|A930008A22Rik|AI593249|mKIAA1201,GRAM domain containing 1B,protein-coding,74.47,91.3,68.32,52.14,22.01,17.18,23.28,10.08,509.24,554.81,527.36,513.56,120.99,304.73,310.25,176.05,84.54,152.82,13.41,40.37,72.53,1462.83,1249.43,869.01,1122.06,1305.28,869.84,885.63,613.7,826.61,1114.82,High basal,6.05372094737082,3.93490164557869,6.19212921329771,4.97949280403137
Merged-chr2-157457320-2,chr2,157457202,157457431,+,978,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_009271, exon 4 of 15)","exon (NM_009271, exon 4 of 15)",33023,NM_001025395,20779,Mm.22845,NM_009271,ENSMUSG00000027646,Src,AW259666|pp60c-src,Rous sarcoma oncogene,protein-coding,21.51,29.79,23.9,20.5,10.3,12.64,10.63,11.03,0,0,0,0,0,0,0,0,54.16,62.72,10.62,35.16,56.66,0,0,0,0,0,0,0,0,0,0,High basal,4.52351368702256,3.31055443849913,5.24697158437359,4.69331568016098
Merged-chr13-49324466-4,chr13,49324275,49324649,+,977.833374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15254,NM_015759,30938,Mm.291089,NM_015759,ENSMUSG00000037946,Fgd3,5830461L01Rik|ZFYVE5,"FYVE, RhoGEF and PH domain containing 3",protein-coding,16.96,26.91,20.19,21.29,21,14.66,25.31,15.44,0,0,0,0,0,0,0,0,48.88,69.57,16.21,50.13,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.36097663590571,4.02150502952734,5.24756775644619,4.96977520480971
Merged-chr2-6335549-4,chr2,6335421,6335719,+,977.541626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001080548, intron 1 of 14)","intron (NM_001080548, intron 1 of 14)",12813,NM_001080548,98910,Mm.40673,NM_181399,ENSMUSG00000039046,Usp6nl,AI316785|RNTRE|TRE2NL|mKIAA0019,USP6 N-terminal like,protein-coding,21.93,12.17,17.84,30.84,26.25,17.69,28.35,15.12,0,0,0,0,0,0,0,0,50.86,76.41,24.03,62.5,61.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.26261691801884,4.20149541905607,5.34150729835785,5.37376115306862
Merged-chr1-34564564-4,chr1,34564378,34564723,+,977.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3607,NM_009356,21756,Mm.14418,NM_009356,ENSMUSG00000037529,Prss40,Tesp2,"protease, serine 40",protein-coding,16.13,16.98,22.89,23.92,21.2,10.61,23.79,8.82,0,0,0,0,0,0,0,0,31.7,47.9,19,42.32,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2632952855529,3.70298201007123,4.68495265656766,5.02649409188167
Merged-chr4-53521725-4,chr4,53521519,53521894,+,977.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133891, intron 4 of 15)",L1MB3|LINE|L1,81293,NM_133891,100434,Mm.482207,NM_133891,ENSMUSG00000028412,Slc44a1,2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92,"solute carrier family 44, member 1",protein-coding,23.17,47.41,34.67,21.12,17.37,25.27,28.35,5.36,0,0,0,0,0,0,0,0,65.39,92.38,14.53,52.09,76.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85522153679794,3.83535254894527,5.65254752356879,5.15915646599882
Merged-chr15-62104778-4,chr15,62104608,62104937,+,976.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_132746, intron 1 of 6)","intron (NR_132746, intron 1 of 6)",65515,NR_132746,19296,Mm.4608,NM_011222,ENSMUSG00000097039,Pvt1,Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1,Pvt1 oncogene,ncRNA,42.2,26.91,41.4,49.95,26.66,15.16,19.74,13.86,0,0,0,0,0,0,0,0,61.43,94.66,22.92,38.41,51.37,0,0,0,0,0,0,0,0,0,0,High basal,5.23110757071799,4.00369099242201,5.62567362848805,5.04166028452729
Merged-chr13-69538495-8,chr13,69538344,69538665,+,976.0625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4640,NM_001169131,210106,Mm.315959,NM_198600,ENSMUSG00000034575,Papd7,LAK-1|POLK|Pols|TRF4|TRF4-1,PAP associated domain containing 7,protein-coding,132.38,152.17,133.95,101.99,29.28,13.65,45.56,17.01,418.21,505.19,777.4,414.65,87.11,167.82,186.15,232.23,198.81,322.74,45.83,100.26,110.3,1880.78,1779.77,956.97,1228.05,2050.14,1182.98,1090.67,692.56,1012.69,857.02,High basal,6.92307738295061,4.35170305310676,7.33709436031583,6.17931200405714
Merged-chr17-27790219-8,chr17,27790002,27790437,+,973.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033279, intron 2 of 4)","intron (NM_001033279, intron 2 of 4)",30323,NM_001033279,224647,Mm.196577,NM_001033279,ENSMUSG00000056692,D17Wsu92e,AU020189|C030010A15|C80239,"DNA segment, Chr 17, Wayne State University 92, expressed",protein-coding,15.31,16.34,14.81,26.2,26.05,12.13,16.7,16.7,115.62,126.3,231.86,216.84,176.65,132.49,212.74,157.32,38.31,66.15,11.18,42.32,64.97,339.09,310.11,313.13,347.22,539.14,402.06,314.11,301.71,297.01,522.57,Equal basal,4.1143610625669,3.91879281978559,5.04184299837054,4.86691719854696
Merged-chr19-55654983-4,chr19,55654848,55655141,+,973.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_045318, intron 2 of 3)","intron (NR_045318, intron 2 of 3)",47210,NR_045318,77594,Mm.329924,NR_045318,ENSMUSG00000097632,4930552P12Rik,-,RIKEN cDNA 4930552P12 gene,ncRNA,38.47,35.88,19.86,31.89,25.65,27.29,13.67,18.59,0,0,0,0,0,0,0,0,52.84,92.38,32.98,50.13,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,4.87810660010801,4.1566467443123,5.50236960190178,5.51294918695487
Merged-chr6-124319724-4,chr6,124319581,124319868,+,973.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001170395, intron 10 of 16)","intron (NM_001170395, intron 10 of 16)",15073,NM_053094,93671,Mm.37426,NM_053094,ENSMUSG00000008845,Cd163,CD163v2|CD163v3,CD163 antigen,protein-coding,20.68,22.11,19.86,15.16,21.2,7.08,13.67,7.25,0,0,0,0,0,0,0,0,42.93,37.63,16.21,28,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2361854607924,3.32293247163864,4.72885714289726,4.67656662745655
Merged-chrX-71150683-4,chrX,71150470,71150944,+,972.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081354, intron 5 of 6)","intron (NM_001081354, intron 5 of 6)",-60060,NM_001164190,17772,Mm.274981,NM_019926,ENSMUSG00000031337,Mtm1,AF073996|Mtm|mKIAA4176,X-linked myotubular myopathy gene 1,protein-coding,19.44,21.14,33.32,36.89,22.42,24.26,24.8,19.22,0,0,0,0,0,0,0,0,46.9,90.09,26.83,57.95,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6876139781801,4.28542343839378,5.40091943662704,5.32112312444646
Merged-chrX-112371042-4,chrX,112370796,112371213,+,971.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026565, intron 8 of 8)","intron (NM_026565, intron 8 of 8)",35775,NM_028655,73809,Mm.50508,NM_028655,ENSMUSG00000025527,Satl1,4930404K22Rik,spermidine/spermine N1-acetyl transferase-like 1,protein-coding,76.53,63.75,52.5,44.69,40.79,32.85,26.32,31.51,0,0,0,0,0,0,0,0,42.93,59.3,60.36,72.92,81.59,0,0,0,0,0,0,0,0,0,0,Equal basal,5.78786720110812,4.79967683204062,5.04475649421576,6.01636874053885
Merged-chr14-102828656-4,chr14,102828497,102828820,+,971.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,153974,NR_039592,100628599,NA,NR_039592,ENSMUSG00000092901,Mir5130,mir-5130|mmu-mir-5130|mu-mir-5130,microRNA 5130,ncRNA,40.54,36.2,26.25,34.7,30.09,20.22,56.69,12.29,0,0,0,0,0,0,0,0,70.01,131.15,32.42,95.06,117.1,0,0,0,0,0,0,0,0,0,0,Equal basal,5.0322139443139,4.46337276399823,5.94957828200632,6.0189654644912
Merged-chr12-40273524-4,chr12,40273328,40273694,+,971.4375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,50147,NR_045157,629820,Mm.435540,NR_045157,ENSMUSG00000035983,Gm7008,EG629820,predicted gene 7008,ncRNA,28.13,26.27,8.41,30.67,30.9,19.71,22.27,18.27,0,0,0,0,0,0,0,0,52.84,60.44,30.74,61.2,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,4.355660305797,4.2755426072844704,5.20364687151952,5.5127387430159
Merged-chr11-22437689-4,chr11,22437560,22437817,+,971.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-74595,NM_153596,103765,Mm.221274,NM_153596,ENSMUSG00000049904,Tmem17,AI503894|AW049890,transmembrane protein 17,protein-coding,63.71,54.78,35.34,38.9,16.16,21.73,18.73,7.25,0,0,0,0,0,0,0,0,107,111.76,27.39,42.32,58.93,0,0,0,0,0,0,0,0,0,0,High basal,5.47899554517976,3.70114885438851,6.13700204760081,5.23435007948148
Merged-chr14-50372767-3,chr14,50372498,50373065,+,970.75,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,14867,NM_205819,239081,Mm.291512,NM_205819,ENSMUSG00000051969,Tlr11,Gm287,toll-like receptor 11,protein-coding,2.07,0.64,0,0.61,8.68,8.09,17.21,7.56,4.92,4.51,0,49.45,41.14,53,44.32,112.37,0,3.42,7.83,31.25,37.02,27.6,40.45,21.11,80.41,0,375,523.52,164.57,311.32,334.45,Low basal,0.632783131242088,3.18323345400187,0.768561265381247,4.30442903829978
Merged-chr1-157141236-8,chr1,157141009,157141407,+,970.645813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177644, intron 17 of 17)","intron (NM_177644, intron 17 of 17)",-32528,NM_001305063,73435,Mm.116705,NM_028540,ENSMUSG00000026592,Tex35,1700057K13Rik,testis expressed 35,protein-coding,55.02,49.66,55.19,53.98,39.58,35.38,27.84,25.21,142.68,162.38,63.65,133.14,208.11,97.16,159.56,153.57,107,102.64,32.98,92.45,111.06,394.29,440.45,232.21,237.57,262.48,274.48,279.21,243.42,232.6,292.64,Equal basal,5.66574414424602,4.75531593565278,6.07658852645012,5.98867072780668
Merged-chr9-65364363-3,chr9,65364213,65364579,+,970.533325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001111145, intron 1 of 6)","intron (NM_001111145, intron 1 of 6)",3336,NM_001111145,208080,Mm.291862,NM_001111145,ENSMUSG00000086228,Ubap1l,Gm514,ubiquitin-associated protein 1-like,protein-coding,9.93,19.54,23.9,18.14,5.05,6.07,4.05,2.52,0,0,0,0,0,0,0,0,40.29,51.32,7.27,21.49,27.95,0,0,0,0,0,0,0,0,0,0,High basal,4.07431274043984,2.16184467451385,4.89941683418996,3.9712933019155
Merged-chr3-21953622-4,chr3,21953454,21953787,+,970.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-123032,NM_030732,81004,Mm.202966,NM_030732,ENSMUSG00000027630,Tbl1xr1,8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1,transducin (beta)-like 1X-linked receptor 1,protein-coding,24.41,15.38,25.24,24.97,24.84,18.7,31.38,12.6,0,0,0,0,0,0,0,0,39.63,55.88,29.06,61.2,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.4248061255184,4.17233262795233,4.94732363684885,5.45856917990291
Merged-chr5-129995216-3,chr5,129995064,129995373,+,969.777771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357025, intron 8 of 10)","intron (NM_001357025, intron 8 of 10)",7831,NM_010368,110006,Mm.3317,NM_010368,ENSMUSG00000025534,Gusb,AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g,"glucuronidase, beta",protein-coding,4.96,10.89,17.84,31.72,5.86,8.09,1.01,9.45,0,0,0,0,0,0,0,0,48.22,49.04,14.53,24.74,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,3.76200566500663,2.40474612065042,4.9933592220572,4.56983018485558
Merged-chr1-164136126-4,chr1,164135981,164136307,+,968.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011347, intron 8 of 15)","intron (NM_011347, intron 8 of 15)",-15691,NM_007976,14067,Mm.12900,NM_007976,ENSMUSG00000026579,F5,AI173222|Cf-5|Cf5,coagulation factor V,protein-coding,32.68,26.59,27.93,21.82,17.17,8.59,17.21,10.71,0,0,0,0,0,0,0,0,66.05,82.11,13.97,39.06,43.06,0,0,0,0,0,0,0,0,0,0,High basal,4.69890235913976,3.52236365979869,5.57640562530945,4.73857506917329
Merged-chr7-110179393-4,chr7,110179229,110179559,+,968.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-42309,NM_009302,20947,Mm.334144,NM_009302,ENSMUSG00000031015,Swap70,70kDa|AV235546,SWA-70 protein,protein-coding,19.44,16.34,6.06,11.92,28.07,13.65,21.77,6.93,0,0,0,0,0,0,0,0,29.72,38.77,24.59,39.72,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.63858196082677,3.77681422776609,4.49409298770081,5.11687589617441
Merged-chr5-74348488-5,chr5,74348205,74348860,+,968.282837,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001114660, intron 5 of 8)","intron (NM_001114660, intron 5 of 8)",153206,NM_026878,68939,Mm.293316,NM_026878,ENSMUSG00000049907,Rasl11b,1190017B18Rik,"RAS-like, family 11, member B",protein-coding,0.83,0,0,1.58,56.14,50.04,64.79,37.49,27.06,54.13,0,0,65.34,39.75,66.48,26.22,3.3,1.14,59.81,206.39,249.31,43.37,40.45,3.52,25.58,0,487.11,510.43,212.57,386.47,327.48,Low basal,0.531783975300855,5.43247558727705,1.23492162419566,7.0381599463295
Merged-chr2-167293514-4,chr2,167293363,167293698,+,966.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-52993,NM_008968,19223,Mm.2339,NM_008968,ENSMUSG00000017969,Ptgis,Cyp8|Cyp8a1|Pgis,prostaglandin I2 (prostacyclin) synthase,protein-coding,30.61,35.56,32.65,44.78,27.67,6.57,16.7,17.33,0,0,0,0,0,0,0,0,83.88,130.01,21.8,66.41,84.62,0,0,0,0,0,0,0,0,0,0,High basal,5.08910368566336,3.73376256644985,6.07143396845667,5.50956521232006
Merged-chr1-37357324-4,chr1,37357187,37357491,+,966.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030266, intron 1 of 25)","intron (NM_030266, intron 1 of 25)",-11878,NM_172971,269180,Mm.5294,NM_030266,ENSMUSG00000026113,Inpp4a,107kDa|9630012D15|D130048C09Rik|R74740,"inositol polyphosphate-4-phosphatase, type I",protein-coding,21.51,35.24,18.51,37.06,35.95,15.16,29.87,16.07,0,0,0,0,0,0,0,0,50.2,71.85,27.95,76.83,57.42,0,0,0,0,0,0,0,0,0,0,Equal basal,4.70108210233062,4.29414926706339,5.28897669076168,5.5117660012967304
Merged-chr5-66137409-8,chr5,66137214,66137662,+,966.75415,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001127382, intron 2 of 7)","intron (NM_001127382, intron 2 of 7)",13540,NM_001291226,245945,Mm.36863,NM_139065,ENSMUSG00000070780,Rbm47,9530077J19Rik,RNA binding motif protein 47,protein-coding,25.65,18.26,26.25,31.19,33.52,40.94,28.85,22.06,83.64,85.7,118.2,129.34,215.37,158.99,252.63,153.57,52.18,83.25,24.59,97.66,76.31,386.41,435.95,126.66,332.6,177.35,676.54,741.66,288,737.15,808.24,Equal basal,4.5966132484471,4.7102431341829,5.42002409320321,5.6994170284157
Merged-chr16-14132044-4,chr16,14131865,14132203,+,966.666626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081154, intron 15 of 26)","intron (NM_001081154, intron 15 of 26)",27240,NM_001081154,223989,Mm.85442,NM_001081154,ENSMUSG00000060657,Marf1,4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430,meiosis regulator and mRNA stability 1,protein-coding,50.47,27.87,43.75,39.26,31.5,15.16,28.85,21.74,0,0,0,0,0,0,0,0,76.62,163.08,16.21,72.27,113.32,0,0,0,0,0,0,0,0,0,0,Equal basal,5.23983802910752,4.34190611897318,6.16868136308945,5.55072291882177
Merged-chr1-43735506-4,chr1,43735347,43735641,+,966.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_024283, intron 1 of 3)",MTD|LTR|ERVL-MaLR,4892,NM_024283,78896,Mm.50109,NM_024283,ENSMUSG00000026051,1500015O10Rik,Ecrg4,RIKEN cDNA 1500015O10 gene,protein-coding,16.55,16.02,17.16,14.63,15.15,10.11,23.28,9.77,0,0,0,0,0,0,0,0,21.8,58.16,17.89,35.16,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.99313627531996,3.61128241589295,4.56366462253749,4.9497878240253
Merged-chr4-118106930-8,chr4,118106693,118107072,+,966,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001285520, intron 2 of 11)","intron (NM_001285520, intron 2 of 11)",28064,NM_001285520,20441,Mm.251002,NM_009176,ENSMUSG00000028538,St3gal3,ST3GalIII|ST3N|Siat3|Siat6,"ST3 beta-galactoside alpha-2,3-sialyltransferase 3",protein-coding,57.09,62.15,33.66,47.32,14.54,22.74,12.65,10.4,300.13,455.58,254.59,319.55,312.16,251.73,150.69,206.01,97.75,127.73,17.89,27.34,44.57,1036.99,1033.7,633.29,847.94,1432.97,502.57,567.15,250.28,551.07,1024.24,High basal,5.54200099726266,3.67070997255593,6.16756605035732,4.70334893983532
Merged-chr5-118647621-8,chr5,118647451,118647779,+,965.974976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001347445, intron 2 of 30)","intron (NM_001347445, intron 2 of 30)",86896,NM_172424,76199,Mm.206238,NM_172424,ENSMUSG00000018076,Med13l,2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025,mediator complex subunit 13-like,protein-coding,44.27,44.21,32.65,49.86,13.73,14.66,18.73,26.47,204.19,347.32,268.23,369,203.27,287.06,314.68,288.42,93.79,100.36,26.27,54.04,36.26,871.39,903.37,496.08,869.87,773.24,749.99,750.38,483.42,758.62,836.11,High basal,5.33231380319345,3.96125612038388,5.96690264333137,5.10286769778215
Merged-chr2-145746800-3,chr2,145746659,145746933,+,964.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_033220, intron 3 of 3)","intron (NR_033220, intron 3 of 3)",-39320,NM_028724,74030,Mm.228799,NM_028724,ENSMUSG00000001768,Rin2,2010003K16Rik|4632403N06Rik|AW821980|RASSF4,Ras and Rab interactor 2,protein-coding,6.21,16.66,13.46,13.49,1.21,2.02,6.07,4.73,0,0,0,0,0,0,0,0,22.46,39.92,2.79,21.49,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.56689564064863,1.81704759989211,4.32218661142147,3.60093551534615
Merged-chr13-59856965-8,chr13,59856732,59857181,+,964.324402,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-33809,NM_153538,214290,Mm.233082,NM_153538,ENSMUSG00000035248,Zcchc6,6030448M23Rik|AA420405,"zinc finger, CCHC domain containing 6",protein-coding,51.3,50.62,41.06,36.71,20.8,34.37,15.69,23.95,196.81,469.11,363.7,349.98,79.85,83.91,168.42,104.88,85.21,130.01,31.86,55.34,90.66,1178.94,943.82,605.14,628.64,787.43,1360.81,1029.6,534.85,1152.25,884.89,High basal,5.41148945360378,4.30466027781136,6.08252400711154,5.63400498474458
Merged-chr11-118312448-4,chr11,118312236,118312690,+,964.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011594, intron 3 of 4)","intron (NM_011594, intron 3 of 4)",-22219,NM_001033528,72344,Mm.232293,NM_001033528,ENSMUSG00000033909,Usp36,2700002L06Rik|mKIAA1453,ubiquitin specific peptidase 36,protein-coding,36.82,50.3,26.92,39.34,38.57,32.35,26.32,12.92,0,0,0,0,0,0,0,0,56.14,80.97,27.95,91.8,87.64,0,0,0,0,0,0,0,0,0,0,Equal basal,5.16287095056304,4.46279965504157,5.45190537328672,5.79532948435167
Merged-chr15-62166000-3,chr15,62165754,62166231,+,963.722229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_003368, intron 4 of 8)","intron (NR_003368, intron 4 of 8)",53459,NR_003523,67552,Mm.484027,NM_026230,NA,H2afy3,4933432H23Rik,"H2A histone family, member Y3",pseudo,39.71,40.05,32.31,50.47,39.78,24.26,26.83,28.67,0,0,0,0,0,0,0,0,79.92,79.83,34.65,79.43,80.84,0,0,0,0,0,0,0,0,0,0,Equal basal,5.26491045187317,4.65280938930273,5.69146007340239,5.78970317672787
Merged-chr12-26439525-10,chr12,26439252,26439782,+,963.700012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,16935,NM_021384,58185,Mm.24045,NM_021384,ENSMUSG00000020641,Rsad2,2510004L01Rik|Vig1|cig5,radical S-adenosyl methionine domain containing 2,protein-coding,119.97,201.51,99.96,99.01,34.13,34.87,26.83,19.22,602.72,509.7,695.57,464.1,135.51,247.32,53.19,127.35,217.31,283.97,41.92,214.85,187.36,2089.76,2143.81,1368.61,1867.66,2135.27,1650.76,1566.21,853.7,1359.8,1351.72,High basal,6.87218920404873,4.57905400706783,7.30905010550816,6.7524689759392
Merged-chr17-8140421-4,chr17,8140285,8140623,+,963.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026611, intron 4 of 8)","intron (NM_026611, intron 4 of 8)",7334,NM_001083938,100037283,Mm.426736,NM_001083938,ENSMUSG00000095687,Rnaset2a,0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2,ribonuclease T2A,protein-coding,32.68,44.21,27.93,15.07,13.53,17.18,20.75,8.82,0,0,0,0,0,0,0,0,48.88,92.38,15.09,48.18,48.35,0,0,0,0,0,0,0,0,0,0,High basal,4.75562624171149,3.67887823316057,5.44762105963974,4.9256737628999
Merged-chr12-79135669-3,chr12,79135544,79135828,+,963.266663,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009705, intron 2 of 7)",B1F2|SINE|Alu,4898,NM_009705,11847,Mm.3506,NM_009705,ENSMUSG00000021125,Arg2,AII|AU022422,arginase type II,protein-coding,17.79,26.59,16.83,19.8,4.24,7.08,14.17,4.73,41.82,49.62,0,57.06,41.14,48.58,0,56.19,24.44,49.04,6.15,12.37,40.04,161.66,220.22,112.58,127.92,219.91,201.03,213.77,126.86,125.24,222.96,High basal,4.2831940499542,2.69181294268896,4.52246483507547,3.81916172700436
Merged-chr15-6557101-4,chr15,6556924,6557296,+,962.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-22737,NM_001278269,23880,Mm.170905,NM_011815,ENSMUSG00000022148,Fyb,ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130,FYN binding protein,protein-coding,53.37,40.69,48.8,57.31,23.43,13.65,36.95,9.77,0,0,0,0,0,0,0,0,93.79,92.38,32.42,55.99,72.53,0,0,0,0,0,0,0,0,0,0,High basal,5.55948333463259,4.00221970212781,5.90820858221509,5.54225111397702
Merged-chr9-55259959-4,chr9,55259841,55260080,+,962.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_032002, intron 3 of 7)","intron (NM_032002, intron 3 of 7)",23665,NM_032002,83961,Mm.443874,NM_032002,ENSMUSG00000032311,Nrg4,AI552600,neuregulin 4,protein-coding,25.65,20.5,28.27,17.17,16.56,22.74,41,15.12,0,0,0,0,0,0,0,0,41.61,67.29,30.74,44.27,59.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.46199473199955,4.25598059780574,5.11150409875846,5.31558095045173
Merged-chr13-55430770-4,chr13,55430612,55430952,+,962.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15|LTR|ERVL,-3978,NM_021489,58992,Mm.42224,NM_021489,ENSMUSG00000021492,F12,FXII|HAF,coagulation factor XII (Hageman factor),protein-coding,13.24,15.38,7.07,12.62,23.63,25.27,25.82,19.85,0,0,0,0,0,0,0,0,33.69,29.65,26.27,78.13,75.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.55464572662877,4.34277178278255,4.39686080544506,5.61986468583254
Merged-chr2-157448008-3,chr2,157447883,157448131,+,962.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001025395, intron 2 of 13)",B3A|SINE|B2,23714,NM_001025395,20779,Mm.22845,NM_009271,ENSMUSG00000027646,Src,AW259666|pp60c-src,Rous sarcoma oncogene,protein-coding,15.31,31.08,12.79,18.75,15.35,8.09,9.62,3.15,0,0,0,0,0,0,0,0,44.25,62.72,11.74,67.71,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.17427482851026,2.905093306297,5.10524633157836,4.82753411354798
Merged-chr7-28907411-4,chr7,28907241,28907574,+,962.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_021895, intron 8 of 20)","intron (NM_021895, intron 8 of 20)",25751,NM_001110807,60594,Mm.476990,NM_021894,ENSMUSG00000054083,Capn12,CANP 12,calpain 12,protein-coding,35.16,29.79,14.14,31.54,21.61,25.27,12.15,11.34,0,0,0,0,0,0,0,0,50.86,95.8,22.36,42.32,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66390682823018,3.88357131572982,5.50125611578128,5.08207137842747
Merged-chr2-157447462-13,chr2,157447155,157447820,+,962,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001025395, intron 2 of 13)","intron (NM_001025395, intron 2 of 13)",23194,NM_001025395,20779,Mm.22845,NM_009271,ENSMUSG00000027646,Src,AW259666|pp60c-src,Rous sarcoma oncogene,protein-coding,95.15,101.56,41.73,55.03,42.41,25.27,19.74,16.7,228.79,117.28,204.58,285.31,120.99,185.49,137.4,224.74,97.09,126.59,24.59,83.34,80.08,772.82,773.03,605.14,785.81,780.33,649.48,645.68,387.42,772.94,543.47,High basal,6.02585457307269,4.39510724453748,6.15636463555149,5.64706705188624
Merged-chr2-146099973-7,chr2,146099764,146100215,+,961.619019,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-122008,NM_016889,53626,Mm.379070,NM_016889,ENSMUSG00000068154,Insm1,IA-1,insulinoma-associated 1,protein-coding,35.16,20.82,43.42,24.36,8.08,13.14,9.62,6.3,93.48,248.09,31.82,68.47,99.21,216.4,4.43,82.41,73.32,93.52,17.33,45.57,46.84,311.49,395.5,260.35,350.87,319.23,313.14,370.83,226.28,293.43,376.25,High basal,4.8352833666188,3.06161987182881,5.74214463938733,4.94845975598572
Merged-chr17-71143478-6,chr17,71143195,71143639,+,961.488098,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RSINE1|SINE|B4,-40115,NM_001357791,64898,Mm.227924,NM_022882,ENSMUSG00000024052,Lpin2,2610511G02Rik|AI481352|AW742896,lipin 2,protein-coding,34.34,29.47,46.44,52.05,40.19,36.39,44.04,27.1,61.5,40.6,36.37,11.41,72.6,39.75,62.05,14.98,98.42,126.59,29.62,101.57,126.17,189.26,197.75,87.96,138.89,312.13,185.57,183.23,75.43,143.14,292.64,Equal basal,5.24421954017036,4.95482556168872,6.16597686000906,6.04347347429428
Merged-chr19-59036894-3,chr19,59036737,59037094,+,961.388916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001114312, intron 5 of 16)","intron (NM_001114312, intron 5 of 16)",39154,NM_175172,71653,Mm.37338,NM_175172,ENSMUSG00000041362,Shtn1,4930506M07Rik|Shootin1|mKIAA1598,shootin 1,protein-coding,17.79,17.94,9.09,16.39,23.02,8.59,9.11,5.36,0,0,0,0,0,0,0,0,39.63,41.06,8.94,46.88,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,3.8680218752779,3.17946079227527,4.73300864935866,4.93497289576029
Merged-chr2-143847100-4,chr2,143846922,143847263,+,961.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001291061, intron 3 of 7)",LTR16E1|LTR|ERVL,16081,NM_009751,12075,Mm.275937,NM_009751,ENSMUSG00000027420,Bfsp1,CP95,"beaded filament structural protein 1, in lens-CP94",protein-coding,15.72,35.56,19.18,21.29,14.74,11.62,13.16,16.38,0,0,0,0,0,0,0,0,58.79,72.99,16.21,48.18,55.91,0,0,0,0,0,0,0,0,0,0,Equal basal,4.41366068094922,3.6280143446822,5.4111364225456,5.02644760511744
Merged-chr1-131915909-4,chr1,131915643,131916082,+,961.150024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001145804, intron 1 of 6)","intron (NM_001145804, intron 1 of 6)",5404,NM_175294,98415,Mm.246869,NM_175294,ENSMUSG00000026434,Nucks1,2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks,nuclear casein kinase and cyclin-dependent kinase substrate 1,protein-coding,31.03,39.08,33.32,37.59,33.12,15.16,30.88,21.74,0,0,0,0,0,0,0,0,61.43,82.11,30.18,80.08,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,5.07088786936103,4.38294206156845,5.52516856781453,5.69189426922168
Merged-chr17-27975490-2,chr17,27975361,27975632,+,960.666626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_181413, intron 2 of 24)","intron (NM_181413, intron 2 of 24)",66190,NM_181413,224650,Mm.32556,NM_181413,ENSMUSG00000024219,Anks1,Anks1a|mKIAA0229,ankyrin repeat and SAM domain containing 1,protein-coding,16.55,17.3,12.79,15.33,2.02,0.51,1.01,1.26,0,0,0,0,0,0,0,0,21.14,46.76,5.59,7.16,12.09,0,0,0,0,0,0,0,0,0,0,High basal,3.94206286141066,0.838695645274855,4.39063181303117,3.00959380530391
Merged-chr11-3164224-3,chr11,3164082,3164358,+,960,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 9 of 32)",B2_Mm2|SINE|B2,29243,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,28.96,23.39,29.62,18.84,1.62,0.51,2.53,1.26,0,0,0,0,0,0,0,0,29.06,28.51,30.74,24.74,43.06,0,0,0,0,0,0,0,0,0,0,High basal,4.5905438433488,0.91534342705751,4.26822793202417,4.89407847882891
Merged-chr15-68011391-9,chr15,68011180,68011744,+,959.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,LTR48B|LTR|ERV1,247394,NR_152182,380993,Mm.309526,NM_198644,ENSMUSG00000022335,Zfat,Gm922|Zfat1|Zfp406,zinc finger and AT hook domain containing,protein-coding,29.37,24.99,31.97,38.2,24.64,25.78,31.89,25.52,130.38,135.32,168.21,125.54,137.93,136.91,132.96,179.79,62.09,92.38,30.74,53.39,74.04,279.95,431.46,112.58,299.7,617.17,239.69,253.04,106.28,268.38,369.28,Equal basal,4.88798908341429,4.5220356313625,5.61595716095915,5.50464606193324
Merged-chr8-82918168-6,chr8,82918016,82918352,+,959.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177378, intron 1 of 6)","intron (NM_177378, intron 1 of 6)",54828,NM_177378,330812,Mm.491438,NM_177378,ENSMUSG00000047747,Rnf150,A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214,ring finger protein 150,protein-coding,48.82,55.42,50.82,41.71,3.63,1.52,5.06,0.63,150.06,302.21,227.31,327.16,77.43,79.49,48.75,104.88,50.86,76.41,6.71,11.07,2.27,760.99,930.33,453.86,489.76,461.1,579.89,554.06,346.28,418.67,243.87,High basal,5.54256954055501,1.42709063006326,5.34150729835785,2.64787964472468
Merged-chr14-106155366-4,chr14,106155185,106155537,+,958.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,49163,NR_073203,212085,Mm.78128,NM_198601,ENSMUSG00000022113,Trim52,4921513B05Rik,tripartite motif-containing 52,protein-coding,19.03,21.14,21.2,27.86,14.34,15.67,32.9,11.97,0,0,0,0,0,0,0,0,46.9,55.88,32.98,35.81,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.43121252190431,3.91760031439387,5.06497698283832,5.02707839548036
Merged-chr9-63975491-3,chr9,63975353,63975684,+,958.388916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008542, intron 3 of 3)",URR1B|DNA|hAT-Charlie,46541,NM_008542,17130,Mm.325757,NM_008542,ENSMUSG00000036867,Smad6,Madh6|b2b390Clo,SMAD family member 6,protein-coding,26.06,14.1,29.62,21.82,8.68,7.58,15.69,9.45,0,0,0,0,0,0,0,0,50.2,67.29,12.3,31.25,24.93,0,0,0,0,0,0,0,0,0,0,High basal,4.43231717016374,3.1729079450001,5.2428516661194,4.32533670987021
Merged-chr1-127257202-4,chr1,127257034,127257361,+,958.208374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145128, intron 2 of 17)",MER77B|LTR|ERVL,52211,NM_145128,107895,Mm.214682,NM_145128,ENSMUSG00000036155,Mgat5,4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV,mannoside acetylglucosaminyltransferase 5,protein-coding,23.58,27.55,13.13,23.83,21.61,21.73,22.27,21.74,0,0,0,0,0,0,0,0,40.95,53.6,15.65,55.99,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.36880723684605,4.2407421292405,4.9410882014517,5.2717028186655
Merged-chr4-144996028-3,chr4,144995891,144996189,+,958.055542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001276465, intron 67 of 69)","intron (NM_001276465, intron 67 of 69)",102903,NM_001357277,20148,Mm.14063,NM_011303,ENSMUSG00000066026,Dhrs3,Rsdr1|retSDR1,dehydrogenase/reductase (SDR family) member 3,protein-coding,12,11.85,12.79,17.79,7.07,5.05,2.02,4.41,0,0,0,0,0,0,0,0,31.7,41.06,7.27,28,21.91,0,0,0,0,0,0,0,0,0,0,High basal,3.73862810289177,2.20344975846094,4.57809459099962,3.98134371859536
Merged-chr12-32305891-4,chr12,32305746,32306037,+,957.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1MB7|LINE|L1,-72898,NM_001162903,72123,Mm.341352,NM_028111,ENSMUSG00000090946,Ccdc71l,2010109K11Rik|AV375874,coiled-coil domain containing 71 like,protein-coding,14.07,35.56,14.81,16.65,26.25,32.85,25.82,11.03,0,0,0,0,0,0,0,0,40.29,78.69,38.01,50.13,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.21146717745413,4.26364169890446,5.19920617520797,5.37502800065012
Merged-chr15-90623701-4,chr15,90623519,90623889,+,957.299988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357979, intron 3 of 18)","intron (NM_001357979, intron 3 of 18)",55684,NM_025815,66871,Mm.290991,NM_025815,ENSMUSG00000052560,Cpne8,1200003E11Rik|1500031E20Rik,copine VIII,protein-coding,40.13,36.52,25.24,35.14,10.9,21.23,21.77,12.92,0,0,0,7.61,0,0,0,0,73.32,86.67,16.21,52.09,44.57,0,0,21.11,0,0,0,0,20.57,0,0,High basal,5.0163835235364,3.81998362265744,5.68840625355732,4.95710384984646
Merged-chr3-79491828-4,chr3,79491640,79492054,+,956.849976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001162999, intron 10 of 16)","intron (NM_001162999, intron 10 of 16)",75832,NM_001162999,329679,Mm.244005,NM_001162999,ENSMUSG00000061175,Fnip2,D630023B12Rik|mKIAA1450,folliculin interacting protein 2,protein-coding,74.05,50.3,65.96,78.25,23.22,25.27,60.74,40.33,0,0,0,0,0,0,0,0,112.29,141.41,38.01,97.66,101.24,0,0,0,0,0,0,0,0,0,0,High basal,5.97093540495371,4.89387242330582,6.33868330074514,6.03764096164847
Merged-chr1-80661938-6,chr1,80661516,80662358,+,956.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_175291, intron 1 of 55)","intron (NM_175291, intron 1 of 55)",3415,NM_001285927,210293,Mm.133473,NM_175291,ENSMUSG00000038608,Dock10,9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694,dedicator of cytokinesis 10,protein-coding,35.16,31.08,13.46,32.77,30.9,24.77,28.35,16.38,0,0,0,0,0,0,0,0,58.79,86.67,21.24,59.25,92.17,0,0,0,0,0,0,0,0,0,0,Equal basal,4.67556123316586,4.40010043306085,5.53235568845205,5.48420721130392
Merged-chr5-52424245-6,chr5,52423886,52424621,+,956.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001256059, intron 3 of 11)","intron (NM_001256059, intron 3 of 11)",-16906,NR_152197,100041805,Mm.417070,NR_152197,NA,Gm3519,Gm43683,predicted gene 3519,ncRNA,43.85,45.81,50.48,48.37,47.66,51.55,35.94,34.03,9.84,0,0,0,2.42,0,35.46,0,79.26,147.12,39.68,98.96,129.19,7.89,26.97,3.52,21.93,0,30.93,21.81,10.29,10.74,83.61,Equal basal,5.48945791942175,5.14669536660064,6.1192415724966,6.18009540794817
Merged-chr2-122418564-8,chr2,122418373,122418714,+,956.270813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-22277,NM_172980,269346,Mm.29510,NM_172980,ENSMUSG00000027219,Slc28a2,2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT,"solute carrier family 28 (sodium-coupled nucleoside transporter), member 2",protein-coding,59.57,81.05,54.52,37.5,21.2,29.32,29.36,19.22,167.29,230.04,213.67,125.54,79.85,92.74,93.08,104.88,75.96,106.06,26.27,93.75,82.35,575.67,602.24,249.8,453.21,652.64,417.52,427.54,260.57,286.27,452.89,High basal,5.73821128427206,4.39633361867041,5.85640903247176,5.74689737812691
Merged-chr5-147072098-6,chr5,147071945,147072245,+,956,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080795, intron 1 of 9)","intron (NM_080795, intron 1 of 9)",4477,NM_080795,140887,Mm.272203,NM_080795,ENSMUSG00000016520,Lnx2,9630046H24|AW209022,ligand of numb-protein X 2,protein-coding,83.15,59.27,61.25,56.69,1.82,3.54,13.67,2.84,228.79,360.85,440.98,182.6,48.4,39.75,62.05,78.66,89.83,68.43,7.83,12.37,19.64,859.56,647.19,503.11,657.88,709.39,494.84,593.33,257.14,397.2,501.67,High basal,5.9297594698458,2.04994271766015,5.66585456787484,3.59875994471877
Merged-chr3-142249717-2,chr3,142249593,142249831,+,955.833374,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001190854, intron 9 of 12)","intron (NM_001190854, intron 9 of 12)",-80287,NM_001277216,12167,Mm.39089,NM_007560,ENSMUSG00000052430,Bmpr1b,AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6,"bone morphogenetic protein receptor, type 1B",protein-coding,0,0,0,1.05,3.23,2.02,4.56,4.1,0,0,0,0,14.52,0,0,0,1.98,0,8.94,40.37,35.51,78.86,26.97,21.11,3.65,42.56,224.22,222.5,89.14,103.77,83.61,Equal basal,0.25106208508724,1.87161214973445,0.641708700575518,4.46288745400619
Merged-chr15-31342750-4,chr15,31342538,31342916,+,955.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027496, intron 1 of 3)","intron (NM_027496, intron 1 of 3)",25032,NM_001357923,67434,Mm.102470,NM_026153,ENSMUSG00000022237,Ankrd33b,0610012A05Rik|3021401C12Rik|5730557B15Rik,ankyrin repeat domain 33B,protein-coding,47.58,22.43,63.27,50.65,17.77,25.27,22.27,20.48,0,0,0,0,0,0,0,0,112.29,169.92,19,69.01,86.13,0,0,0,0,0,0,0,0,0,0,High basal,5.36544736370851,4.21665287404055,6.46964773080586,5.47236315057704
Merged-chr4-56055262-4,chr4,56055119,56055429,+,954.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-522799,NM_010637,16600,Mm.4325,NM_010637,ENSMUSG00000003032,Klf4,EZF|Gklf|Zie,Kruppel-like factor 4 (gut),protein-coding,23.99,11.85,18.51,24.53,38.37,18.2,33.41,17.64,0,0,0,0,0,0,0,0,45.57,61.58,27.95,65.76,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.21580993188894,4.46144192527101,5.11296683254486,5.6167558071823
Merged-chr13-73804689-4,chr13,73804520,73804848,+,953.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001360694, intron 17 of 24)","intron (NM_001360694, intron 17 of 24)",40987,NM_011390,20499,Mm.275800,NM_011390,ENSMUSG00000017756,Slc12a7,AA408796|D13Ertd261e|Kcc4,"solute carrier family 12, member 7",protein-coding,21.1,20.5,14.14,22.61,19.79,20.72,5.06,13.86,22.14,27.06,0,0,14.52,0,0,0,40.95,62.72,23.48,55.34,39.29,0,13.48,7.04,25.58,85.13,19.33,8.73,3.43,14.31,0,Equal basal,4.24380097484111,3.58295889881849,5.05105900362467,5.09856019839208
Merged-chr17-48322553-4,chr17,48322389,48322699,+,953.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177083, intron 5 of 5)","intron (NM_177083, intron 5 of 5)",6382,NM_177083,320148,Mm.123455,NM_177083,ENSMUSG00000043740,B430306N03Rik,Treml6,RIKEN cDNA B430306N03 gene,protein-coding,23.17,21.14,15.82,23.75,15.55,17.69,14.17,13.86,0,0,0,0,0,0,0,0,40.95,63.86,14.53,39.72,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,4.33969651017303,3.7576268359496,5.06369743813139,4.96215190964336
Merged-chr1-21036064-8,chr1,21035903,21036214,+,953.21875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177409, intron 2 of 10)","intron (NM_177409, intron 2 of 10)",43167,NM_177409,170829,Mm.185680,NM_177409,ENSMUSG00000041779,Tram2,C330003D03Rik,translocating chain-associating membrane protein 2,protein-coding,59.16,40.05,61.25,69.4,22.62,13.14,38.47,19.22,206.65,212,359.15,197.81,108.89,83.91,75.35,86.15,114.93,126.59,22.92,54.69,60.44,386.41,629.21,351.83,416.66,418.54,274.48,479.9,174.85,386.47,229.93,High basal,5.74150142112887,4.24268813567472,6.27642801965525,5.28291945699045
Merged-chr5-43799715-6,chr5,43799590,43799870,+,953.055542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-17581,NM_178729,242960,Mm.25794,NM_178729,ENSMUSG00000039753,Fbxl5,Fbl4|Fir4,F-box and leucine-rich repeat protein 5,protein-coding,23.17,13.78,28.27,22.87,13.93,19.71,9.62,5.99,36.9,63.15,0,26.63,7.26,13.25,0,22.47,43.59,67.29,11.18,26.69,43.06,323.32,242.7,126.66,281.43,340.51,324.74,222.5,185.14,332.79,202.06,High basal,4.38178603912278,3.32600484125949,5.14400671322199,4.4613092361601
Merged-chr10-7260670-6,chr10,7260520,7260816,+,953.044434,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-48431,NM_172546,215748,Mm.37984,NM_172546,ENSMUSG00000015202,Cnksr3,6820402C05|BC024086|Magi1,Cnksr family member 3,protein-coding,16.96,15.7,4.71,20.07,1.62,3.54,7.09,1.26,110.7,144.34,104.56,106.52,60.5,61.83,39.89,41.2,36.33,38.77,2.79,16.28,30.98,366.69,373.03,109.07,292.39,276.66,228.09,209.41,51.43,232.6,167.22,High basal,3.67508778309729,1.69175328911263,4.63299673923948,3.49925634240655
Merged-chr2-133444960-4,chr2,133444790,133445130,+,952.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-107199,NM_007553,12156,Mm.103205,NM_007553,ENSMUSG00000027358,Bmp2,AI467020|Bmp2a,bone morphogenetic protein 2,protein-coding,17.79,13.13,24.23,19.01,15.95,7.58,17.21,11.03,0,0,0,0,0,0,0,0,41.61,69.57,17.89,51.43,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,4.15006306355696,3.45607017337973,5.13493521904739,4.88117126150225
Merged-chr2-156258665-7,chr2,156258477,156258814,+,951.976196,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172674, intron 4 of 17)","intron (NM_172674, intron 4 of 17)",-53828,NM_027585,70873,Mm.475234,NM_027585,ENSMUSG00000038085,Cnbd2,4921517L17Rik|5430421B09Rik|Cris,cyclic nucleotide binding domain containing 2,protein-coding,38.89,43.57,24.57,35.14,33.72,27.29,18.22,25.84,31.98,22.55,40.92,133.14,65.34,26.5,31.03,127.35,81.24,122.03,18.44,77.48,89.9,279.95,323.59,119.62,226.6,333.41,409.79,370.83,147.43,221.86,209.03,Equal basal,5.06132284009762,4.47881197954525,6.00366106874812,5.53348879516167
Merged-chr15-59481320-6,chr15,59481140,59481540,+,951.8125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026746, intron 4 of 6)","intron (NM_026746, intron 4 of 6)",107142,NM_001164604,68501,Mm.27762,NM_026746,ENSMUSG00000059586,Nsmce2,1110014D18Rik|AI661537,"NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase",protein-coding,40.13,92.27,36.01,24.27,28.88,46.5,33.92,9.45,54.12,54.13,68.19,98.91,33.88,88.33,17.73,71.17,94.45,134.57,31.86,102.87,101.24,122.23,134.83,84.44,120.61,375.98,166.24,231.22,123.43,128.82,118.45,Equal basal,5.34020784640257,4.47490399885017,6.18026102302057,5.97917342437113
Merged-chr1-55505159-4,chr1,55505025,55505285,+,951.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001114663, intron 1 of 5)",Lx8|LINE|L1,99209,NM_001114663,227120,Mm.194183,NM_001114663,ENSMUSG00000038349,Plcl1,C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1,phospholipase C-like 1,protein-coding,27.72,27.23,18.85,22.96,19.39,11.12,25.31,16.7,0,0,0,0,0,0,0,0,44.25,58.16,16.77,59.25,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,4.53613064380482,3.94232565693359,5.05235456145523,4.97452294363666
Merged-chr11-110980430-5,chr11,110980229,110980609,+,951.133362,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_010604, intron 1 of 1)","intron (NM_010604, intron 1 of 1)",12386,NM_001252207,16517,Mm.30176,NM_010604,ENSMUSG00000051497,Kcnj16,6430410F18Rik|AI132396|Kir5.1,"potassium inwardly-rectifying channel, subfamily J, member 16",protein-coding,20.68,16.02,23.56,28.04,9.9,8.09,16.7,6.62,41.82,54.13,131.84,87.5,62.92,92.74,44.32,67.42,35.67,49.04,8.94,24.09,30.22,134.06,89.89,112.58,164.47,63.85,30.93,91.62,24,85.88,174.19,High basal,4.40966464838742,3.14721012393502,4.78292658246252,4.1506122149927
Merged-chr9-40577380-8,chr9,40577196,40577595,+,950.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-46012,NM_001357617,235283,Mm.138434,NM_172768,ENSMUSG00000040111,Gramd1b,3222402H23|A930008A22Rik|AI593249|mKIAA1201,GRAM domain containing 1B,protein-coding,25.65,23.71,19.52,22.26,18.98,10.11,24.8,10.71,226.33,103.75,168.21,57.06,94.37,123.66,150.69,0,31.04,43.34,20.68,45.57,40.8,670.3,512.36,126.66,347.22,503.67,502.57,623.86,366.85,500.98,634.05,Equal basal,4.4721592366003,3.74719081021737,4.60095443201818,4.96610189965329
Merged-chr18-49945712-6,chr18,49945457,49946008,+,950.311096,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081371, intron 37 of 42)","intron (NM_001081371, intron 37 of 42)",-33695,NM_001177760,106869,Mm.27740,NM_134131,ENSMUSG00000062210,Tnfaip8,AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe,"tumor necrosis factor, alpha-induced protein 8",protein-coding,44.68,24.99,65.96,93.49,48.06,23.76,58.72,53.25,9.84,27.06,0,22.82,33.88,57.41,0,22.47,165.79,183.61,65.95,141.93,143.54,165.6,139.33,59.81,168.13,120.6,255.15,143.97,72,239.75,188.13,Equal basal,5.6158274702361,5.2047365721026,6.80319970933676,6.64257503828086
Merged-chr5-147059452-10,chr5,147058958,147059676,+,950.299988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080795, intron 1 of 9)",(CCA)n|Simple_repeat|Simple_repeat,17255,NM_080795,140887,Mm.272203,NM_080795,ENSMUSG00000016520,Lnx2,9630046H24|AW209022,ligand of numb-protein X 2,protein-coding,113.35,110.21,95.92,75.27,45.44,28.81,58.21,27.41,526.46,676.6,600.1,559.21,232.3,287.06,217.18,307.15,142.01,229.23,34.1,97.01,103.5,1435.23,1586.51,724.76,1107.44,1390.41,1248.7,1073.22,692.56,1041.32,1755.84,High basal,6.52363096416022,5.00940319293857,6.85119542303127,5.99375444950385
Merged-chr7-99091068-1,chr7,99090962,99091175,+,950,.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178635, intron 4 of 14)","intron (NM_178635, intron 4 of 14)",50076,NM_178635,78610,Mm.323072,NM_178635,ENSMUSG00000035354,Uvrag,9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl,UV radiation resistance associated gene,protein-coding,10.34,12.81,8.08,11.57,12.72,4.04,12.15,5.67,0,0,0,0,0,0,0,0,21.14,33.07,11.18,26.04,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.42868841155459,2.89690492671522,4.15181917296241,4.33010906756542
Merged-chr15-97573160-3,chr15,97573001,97573347,+,949.400024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1MEc|LINE|L1,132648,NM_028003,71919,Mm.12255,NM_028003,ENSMUSG00000022466,Rpap3,2310042P20Rik|D15Ertd682e,RNA polymerase II associated protein 3,protein-coding,18.62,19.54,7.07,13.06,7.07,7.58,7.09,5.04,0,0,0,0,0,0,0,0,27.74,54.74,6.15,38.41,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.74626716054795,2.66773506123302,4.68597240419944,4.35693123656276
Merged-chr19-41313919-6,chr19,41313728,41314074,+,949.058716,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_031376, intron 8 of 16)","intron (NM_031376, intron 8 of 16)",-49897,NM_133352,107358,Mm.246440,NM_133352,ENSMUSG00000025016,Tm9sf3,1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036,transmembrane 9 superfamily member 3,protein-coding,26.06,18.58,10.1,24.1,24.03,10.11,37.46,9.14,56.58,31.57,59.1,68.47,26.62,44.16,17.73,142.34,35.67,29.65,27.39,46.88,68.75,220.8,166.29,133.69,193.71,120.6,201.03,296.66,85.71,164.61,278.7,Equal basal,4.19278170473347,3.90930870912124,4.4365111941497,5.35459395823248
Merged-chr10-37336915-2,chr10,37336737,37337141,+,949,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-198013,NM_008538,17118,Mm.30059,NM_008538,ENSMUSG00000069662,Marcks,Macs|PKCSL,myristoylated alanine rich protein kinase C substrate,protein-coding,14.89,14.74,20.19,23.75,19.99,13.65,15.19,11.03,0,0,0,0,0,0,0,0,37.65,46.76,14.53,48.83,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.15820885352609,3.68953460532781,4.7873981030503,4.77120317535037
Merged-chr12-41349592-4,chr12,41349447,41349724,+,948.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_053122, intron 4 of 6)",L1MA9|LINE|L1,136472,NM_001271708,16981,Mm.404786,NM_010733,ENSMUSG00000036295,Lrrn3,NLRR-3,"leucine rich repeat protein 3, neuronal",protein-coding,11.58,23.71,12.79,14.9,16.96,12.13,19.74,7.25,0,0,0,0,0,0,0,0,44.91,30.79,19.56,44.92,74.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.92264369978282,3.54796027641305,4.62293333342751,5.2127482875351
Merged-chr3-154885703-5,chr3,154885538,154885870,+,947.869995,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177066, intron 17 of 24)","intron (NM_177066, intron 17 of 24)",169703,NM_177066,435766,Mm.210428,NM_177066,ENSMUSG00000040086,Tnni3k,Cark|D830019J24Rik,TNNI3 interacting kinase,protein-coding,0,2.24,2.02,1.05,19.39,13.65,39.48,18.59,4.92,54.13,0,0,142.77,172.24,84.21,161.06,1.32,1.14,31.3,56.64,52.88,67.03,170.79,24.63,113.3,63.85,954.89,1295.72,551.99,737.15,926.69,Low basal,1.01023025046103,4.18772298657351,0.838215979189375,5.38276516098654
Merged-chr10-17793089-2,chr10,17792943,17793226,+,947.549988,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-3135,NM_138628,378431,Mm.283493,NM_138628,ENSMUSG00000039891,Txlnb,2310001N14Rik|Mdp77,taxilin beta,protein-coding,2.48,1.28,0.67,2.1,5.25,3.54,10.63,2.52,7.38,0,0,0,14.52,0,0,0,2.64,2.28,6.71,37.76,43.82,19.71,22.47,0,47.51,0,231.96,222.5,102.86,175.34,167.22,Equal basal,1.27850329119434,2.2578551806985,1.36179665775999,4.40292254258288
Merged-chr9-40732551-5,chr9,40732409,40732712,+,946.877747,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_133733, intron 1 of 6)","intron (NM_133733, intron 1 of 6)",46596,NM_133733,71566,Mm.280560,NM_133733,ENSMUSG00000032024,Clmp,9030425E11Rik|ACAM|ASP5|AW557819,CXADR-like membrane protein,protein-coding,28.96,19.54,23.56,22.26,0.81,0.51,0,0.95,184.51,198.47,36.37,197.81,36.3,83.91,4.43,22.47,52.18,78.69,1.12,1.95,10.58,441.61,480.9,211.1,310.67,141.88,243.55,148.33,85.71,89.46,55.74,High basal,4.50740258956703,0.362709814398056,5.38025785396229,1.9030121851941
Merged-chr8-25969530-2,chr8,25969427,25969635,+,945.666626,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029884, intron 4 of 17)","intron (NM_029884, intron 4 of 17)",7213,NM_029884,52120,Mm.28326,NM_029884,ENSMUSG00000037260,Hgsnat,9430010M12Rik|AW208455|D8Ertd354e|Tmem76,heparan-alpha-glucosaminide N-acetyltransferase,protein-coding,0.83,1.28,0,6.13,6.26,4.55,3.54,3.15,0,0,4.55,0,2.42,8.83,0,3.75,4.62,10.26,15.09,25.39,21.91,74.92,98.88,59.81,43.86,170.25,185.57,191.96,157.71,135.98,83.61,Equal basal,1.16232242157084,2.09681472378192,2.43267667060355,4.26498437348423
Merged-chr10-19087171-6,chr10,19087000,19087435,+,945.598145,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-54532,NR_038021,100504265,Mm.383417,NR_038021,NA,Gm20139,-,"predicted gene, 20139",ncRNA,53.78,66.32,51.16,33.12,64.22,49.03,73.4,23.32,29.52,108.26,9.09,0,70.18,22.08,22.16,37.46,95.11,181.33,40.8,136.07,144.3,181.38,130.34,126.66,102.34,205.72,181.7,148.33,61.71,143.14,104.51,Equal basal,5.56440201117467,5.3510948052147,6.39787805283373,6.39725632972674
Merged-chr2-102672166-8,chr2,102671951,102672462,+,945.450012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001077514, intron 1 of 10)",MTC|LTR|ERVL-MaLR,13517,NM_001361018,20511,Mm.267547,NM_011393,ENSMUSG00000005089,Slc1a2,1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1,"solute carrier family 1 (glial high affinity glutamate transporter), member 2",protein-coding,98.46,74.32,115.77,64.75,6.06,5.56,6.07,10.4,226.33,180.43,145.48,262.49,7.26,26.5,0,44.95,149.27,222.38,8.94,53.39,86.88,670.3,705.61,460.89,548.24,468.2,436.85,253.04,209.14,368.58,292.64,High basal,6.34807347119809,2.70492321226229,6.86516218392724,5.01263707114535
Merged-chr6-91489071-4,chr6,91488922,91489237,+,945.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_028766),TTS (NM_028766),15328,NM_028766,74122,Mm.38801,NM_028766,ENSMUSG00000030095,Tmem43,1200015A22Rik|LUMA,transmembrane protein 43,protein-coding,38.89,21.78,12.79,22.96,19.99,28.3,22.27,8.82,0,0,0,0,0,0,0,0,58.79,46.76,21.24,49.48,59.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.45507550367024,4.01353449572849,5.09957958338231,5.19470040284188
Merged-chr1-128615676-6,chr1,128615510,128615962,+,945.022217,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B4|SINE|B4,-23437,NM_001356509,12767,Mm.1401,NM_009911,ENSMUSG00000045382,Cxcr4,CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo,chemokine (C-X-C motif) receptor 4,protein-coding,29.37,14.74,28.61,33.56,9.49,6.57,8.61,3.15,103.32,189.45,150.02,110.32,50.82,105.99,13.3,74.91,43.59,78.69,7.83,16.93,23.42,390.35,296.63,109.07,288.74,439.82,359.53,287.94,198.85,282.69,83.61,High basal,4.62291321531127,2.617177295362,5.25422042742376,3.81611171974696
Merged-chr10-25434536-4,chr10,25434366,25434711,+,943.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013511, intron 1 of 19)","intron (NM_013511, intron 1 of 19)",26170,NM_013511,13822,Mm.306026,NM_013511,ENSMUSG00000019978,Epb41l2,4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2,erythrocyte membrane protein band 4.1 like 2,protein-coding,22.34,21.46,16.15,21.73,16.76,16.17,13.67,5.67,0,0,0,0,0,0,0,0,60.77,58.16,13.41,38.41,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31235961275082,3.44702876103448,5.27513172038089,4.73599998513561
Merged-chr10-51824098-4,chr10,51823951,51824264,+,943.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx8|LINE|L1,-66913,NR_045158,71090,Mm.72588,NM_027670,ENSMUSG00000062224,4933411G06Rik,-,Sumo1 pseudogene,pseudo,16.13,12.17,15.82,15.68,21.61,19.71,19.74,7.56,0,0,0,0,0,0,0,0,24.44,22.81,29.62,31.25,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.8796595130385,3.80786068743942,3.99906501018263,4.91370832600675
Merged-chr13-34332938-4,chr13,34332775,34333106,+,943.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001033167, intron 1 of 10)","intron (NM_001033167, intron 1 of 10)",12242,NM_001033167,73102,Mm.23932,NM_001033167,ENSMUSG00000038267,Slc22a23,3110004L20Rik,"solute carrier family 22, member 23",protein-coding,19.03,16.34,19.52,30.67,15.95,15.16,15.19,18.9,0,0,0,0,0,0,0,0,52.18,68.43,27.39,54.04,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.34749131649204,3.85273240023128,5.28185483318814,5.24128062430689
Merged-chr11-37077446-4,chr11,37077271,37077630,+,942.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-133209,NM_011856,23964,Mm.439889,NM_011856,ENSMUSG00000049336,Tenm2,Odz2|Odz3|Ten-2|Ten-m2,teneurin transmembrane protein 2,protein-coding,14.89,12.17,16.83,29.97,23.43,16.17,31.38,10.71,0,13.53,13.64,53.26,9.68,53,22.16,7.49,44.25,63.86,21.24,52.09,68.75,67.03,40.45,14.07,65.79,42.56,81.18,78.53,30.86,53.68,41.81,Equal basal,4.11436593675518,4.0610650517175,5.11788476608508,5.28524124420954
Merged-chr13-81072484-4,chr13,81072344,81072630,+,942.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_015587, intron 1 of 1)",ERVB5_1-I_MM-int|LTR|ERVK,108413,NR_015587,319983,Mm.343027,NR_015587,ENSMUSG00000097098,9330111N05Rik,-,RIKEN cDNA 9330111N05 gene,ncRNA,14.48,13.78,19.52,25.41,27.67,13.14,19.24,15.44,0,0,0,0,0,0,0,0,27.74,22.81,25.71,36.46,64.22,0,0,0,0,0,0,0,0,0,0,Equal basal,4.12182634925231,3.99592822669349,4.0858871204659,5.17583078756305
Merged-chr7-106551247-11,chr7,106550708,106551597,+,942.151489,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER5|LTR|ERV1,93493,NM_001277179,434223,Mm.276443,NM_001277179,NA,Gm1966,-,predicted gene 1966,protein-coding,81.5,94.51,66.64,71.15,15.95,9.6,21.26,18.9,602.72,590.9,731.94,391.83,106.47,207.57,155.13,134.84,107.66,136.85,9.5,78.78,90.66,690.01,710.11,432.75,833.32,1191.78,347.93,571.51,198.85,486.66,250.83,High basal,6.20005665593231,3.79793393221265,6.28537742763388,5.24313359753973
Merged-chr4-154942822-9,chr4,154942536,154943027,+,941.81481900000006,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-14704,NM_178931,230979,Mm.215147,NM_178931,ENSMUSG00000042333,Tnfrsf14,Atar|HveA|Hvem|Tnfrs14,"tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)",protein-coding,29.79,37.8,24.23,29.88,27.67,15.67,13.16,8.82,182.05,130.81,77.29,205.42,91.95,83.91,31.03,127.35,60.77,75.27,15.09,86.59,76.31,749.16,602.24,460.89,606.72,879.65,815.71,641.32,366.85,429.41,466.83,High basal,4.86166812142399,3.73826351451281,5.45618146713611,5.41612048921983
Merged-chr17-62516357-4,chr17,62516198,62516491,+,941.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLTR11B|LTR|ERVK,364973,NM_207654,13640,Mm.7978,NM_010109,ENSMUSG00000048915,Efna5,AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS,ephrin A5,protein-coding,13.24,31.4,24.57,17.09,17.77,20.22,16.2,13.55,0,0,0,0,0,0,0,0,48.88,52.46,17.33,55.34,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,4.32704452055709,3.88987648981757,5.04988424922576,4.95759260747029
Merged-chr12-32944163-4,chr12,32943961,32944339,+,941.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_044986, intron 2 of 5)","intron (NR_044986, intron 2 of 5)",9639,NR_044986,74076,Mm.50114,NR_044986,ENSMUSG00000097494,4933406C10Rik,-,RIKEN cDNA 4933406C10 gene,ncRNA,32.68,21.14,21.2,26.46,15.15,16.17,16.2,14.49,0,0,0,0,0,0,0,0,45.57,88.95,15.09,47.53,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,4.59545025354192,3.78733949441347,5.37189797373519,4.94071212492453
Merged-chr9-62058219-4,chr9,62057971,62058507,+,941.674988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_033320, exon 3 of 3)","3' UTR (NM_033320, exon 3 of 3)",12367,NM_033320,93683,Mm.24411,NM_033320,ENSMUSG00000032252,Glce,1110017N23Rik|AI747411|C130034A12Rik|Hsepi,glucuronyl C5-epimerase,protein-coding,18.2,16.34,14.81,27.34,28.27,12.13,18.22,18.59,0,0,0,0,0,0,0,0,44.91,59.3,17.33,45.57,78.57,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19807112307451,4.02616355502633,5.0763110909467,5.19136037248626
Merged-chr5-77174957-4,chr5,77174797,77175101,+,941.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,36256,NM_001289767,69982,Mm.46106,NM_183284,ENSMUSG00000053030,Spink2,1700007F22Rik|AV038945|HUSI-II,"serine peptidase inhibitor, Kazal type 2",protein-coding,5.79,11.53,2.69,13.84,17.97,24.26,30.37,18.27,0,0,0,0,0,0,0,0,21.8,27.37,16.77,82.69,105.77,0,0,0,0,0,0,0,0,0,0,Equal basal,2.95800159615887,4.27459261685526,4.04387458349847,5.59725576749649
Merged-chr15-53196491-4,chr15,53196317,53196666,+,941.075012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010162, intron 1 of 10)","intron (NM_010162, intron 1 of 10)",149692,NM_010162,14042,Mm.309395,NM_010162,ENSMUSG00000061731,Ext1,AA409028,exostoses (multiple) 1,protein-coding,14.89,35.56,24.57,19.63,17.77,20.72,21.26,9.77,0,0,0,0,0,0,0,0,64.73,62.72,13.97,55.34,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.45569731662766,3.86862093628238,5.37261491646905,5.08283026913446
Merged-chr6-15729433-3,chr6,15729298,15729574,+,940.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_175088, intron 2 of 4)","intron (NM_175088, intron 2 of 4)",8775,NM_175088,16543,Mm.1314,NM_175088,ENSMUSG00000041390,Mdfic,Kdt1|Mdfid,MyoD family inhibitor domain containing,protein-coding,14.48,15.7,16.15,14.11,9.09,14.15,3.04,4.41,0,0,0,0,0,0,0,0,34.35,50.18,13.97,33.2,15.11,0,0,0,0,0,0,0,0,0,0,Equal basal,3.89853120945253,2.69859396981383,4.77273977290976,4.1875989154386
Merged-chr10-39378192-4,chr10,39378010,39378345,+,940.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001122893, intron 1 of 13)","intron (NM_001122893, intron 1 of 13)",8378,NM_001122893,14360,Mm.4848,NM_008054,ENSMUSG00000019843,Fyn,AI448320|AW552119,Fyn proto-oncogene,protein-coding,14.89,12.49,24.57,34.26,19.39,4.04,10.12,10.4,0,0,0,0,0,0,0,0,43.59,44.48,15.09,34.51,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.28574439998822,3.16915181978278,4.85495370037655,4.80541308720951
Merged-chr8-115568562-4,chr8,115568411,115568713,+,940.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,138332,NM_001025577,17132,Mm.275549,NM_001025577,ENSMUSG00000055435,Maf,2810401A20Rik|A230108G15Rik|AW047063|c-maf,avian musculoaponeurotic fibrosarcoma oncogene homolog,protein-coding,28.96,16.34,13.46,18.05,14.14,16.17,14.68,11.97,0,0,0,0,0,0,0,0,40.29,69.57,17.33,34.51,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.18257218337398,3.66062534656725,5.11242358129514,4.70966370338178
Merged-chr2-122452748-5,chr2,122452553,122453013,+,939.880005,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001356532, intron 10 of 17)",ID_B1|SINE|B4,11963,NM_001356532,269346,Mm.29510,NM_172980,ENSMUSG00000027219,Slc28a2,2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT,"solute carrier family 28 (sodium-coupled nucleoside transporter), member 2",protein-coding,15.72,32.68,19.86,34.61,22.21,17.69,26.32,12.6,49.2,81.19,9.09,49.45,24.2,17.67,26.59,0,49.54,84.39,17.89,61.85,58.17,98.57,179.77,94.99,105.99,0,38.66,21.81,10.29,42.94,34.84,Equal basal,4.56858467806886,4.05730702259999,5.39314302093402,5.20776873986697
Merged-chr5-105662866-5,chr5,105662698,105663039,+,939.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L1MB5|LINE|L1,-37101,NM_001122768,231549,Mm.23837,NM_178701,ENSMUSG00000046079,Lrrc8d,2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5,leucine rich repeat containing 8D,protein-coding,8.27,13.46,12.45,26.73,2.22,0,1.01,4.73,164.83,261.62,409.16,57.06,16.94,75.08,26.59,22.47,40.29,36.49,5.59,9.11,9.82,981.79,665.16,485.52,690.78,759.05,204.89,257.4,82.28,67.99,160.26,High basal,3.80308289417843,1.16142914933203,4.6633456134569,3.02101502820148
Merged-chr13-74040136-3,chr13,74040007,74040267,+,939.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_028959, exon 11 of 12)","exon (NM_028959, exon 11 of 12)",22148,NM_028959,74470,Mm.73234,NM_028959,ENSMUSG00000021572,Cep72,2610029E11Rik|4933440J22Rik,centrosomal protein 72,protein-coding,12.82,11.85,8.41,17.35,8.68,11.62,8.61,8.82,0,0,0,0,0,0,0,0,24.44,29.65,13.97,22.79,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.60326877711259,3.09378553014055,4.17604944676265,4.31519927227482
Merged-chr1-57850051-7,chr1,57849831,57850424,+,939.371399,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001164566, intron 1 of 11)","intron (NM_001164566, intron 1 of 11)",4556,NM_001164566,67198,Mm.159989,NM_144882,ENSMUSG00000038305,Spats2l,2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586,"spermatogenesis associated, serine-rich 2-like",protein-coding,25.65,27.23,12.12,23.13,7.67,5.05,4.05,2.21,248.47,239.06,250.04,213.03,94.37,88.33,53.19,93.64,35.67,47.9,3.91,14.32,34.75,615.1,813.48,365.9,661.54,546.23,297.68,279.21,154.28,189.66,250.83,High basal,4.36736148063311,2.17127597186931,4.76656031857203,3.62840730866594
Merged-chr11-117177508-4,chr11,117177363,117177650,+,939.341675,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-22155,NM_001113486,53860,Mm.38450,NM_017380,ENSMUSG00000059248,Sept9,MSF1|Msf|PNUTL4|Sint1,septin 9,protein-coding,13.24,18.9,13.13,12.18,20.4,12.64,19.74,12.92,0,0,0,0,0,0,0,0,28.4,35.35,17.33,32.55,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,3.8138150225156,3.80284642042449,4.39924237478679,4.82126326272702
Merged-chr6-136811569-8,chr6,136811406,136811712,+,939.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1D1|LTR|ERVL-MaLR,3311,NM_177688,232440,Mm.154564,NM_177688,ENSMUSG00000060032,H2afj,E130307C13,"H2A histone family, member J",protein-coding,9.1,4.49,4.04,9.2,22.21,16.68,31.89,16.38,88.56,216.51,181.85,220.64,159.71,203.15,239.34,168.56,17.17,23.95,19,49.48,64.22,622.98,633.7,263.87,548.24,659.73,769.32,972.88,353.14,830.19,863.98,Low basal,2.78236628951183,4.1862034683046,3.79338628822078,5.17747179956812
Merged-chr19-44385346-6,chr19,44385168,44385568,+,938.766663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MTEa|LTR|ERVL-MaLR,22341,NM_009127,20249,Mm.267377,NM_009127,ENSMUSG00000037071,Scd1,AA589638|AI265570|Scd|Scd-1|ab,stearoyl-Coenzyme A desaturase 1,protein-coding,21.93,26.27,9.09,15.86,23.63,18.7,22.27,10.08,29.52,9.02,77.29,68.47,53.24,48.58,39.89,67.42,40.95,53.6,20.12,37.76,61.95,177.43,184.27,133.69,146.2,170.25,247.42,148.33,168,203.97,195.09,Equal basal,4.06023705614316,3.96350951944616,4.9410882014517,5.0609916833429
Merged-chr6-38676880-4,chr6,38676731,38677031,+,937.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_001101507, exon 3 of 5)","exon (NM_001101507, exon 3 of 5)",13812,NM_001101507,665180,Mm.349066,NM_001101507,ENSMUSG00000079598,Clec2l,AI414054|AW122724|Gm1064,"C-type lectin domain family 2, member L",protein-coding,28.13,33.32,25.58,39.08,17.17,12.13,21.26,17.33,0,0,0,0,0,0,0,0,52.18,66.15,20.12,48.83,43.82,0,0,0,0,0,0,0,0,0,0,High basal,4.91145265598389,3.87958952244877,5.25803684526187,5.01887491006237
Merged-chr10-91154141-4,chr10,91153961,91154367,+,937.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001080129, intron 4 of 8)","intron (NM_001080129, intron 4 of 8)",16386,NM_001283048,21917,Mm.159684,NM_011605,ENSMUSG00000019961,Tmpo,5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP,thymopoietin,protein-coding,12,26.59,14.47,14.98,23.83,15.16,24.3,11.03,0,0,0,0,0,0,0,0,23.78,44.48,19.56,35.16,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,3.99170082102256,3.95766033401006,4.43595367206872,5.04259925702294
Merged-chr19-42558914-2,chr19,42558771,42559039,+,937,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177464, intron 1 of 6)","intron (NM_177464, intron 1 of 6)",40100,NM_177464,52013,Mm.254169,NM_177464,ENSMUSG00000025184,R3hcc1l,1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88,R3H domain and coiled-coil containing 1 like,protein-coding,0,0,0,0,8.28,10.11,8.1,6.62,0,0,4.55,0,14.52,0,31.03,0,0,0,13.97,35.16,43.06,19.71,0,7.04,0,42.56,177.83,157.06,37.71,107.35,0,Low basal,0,2.93969743437433,0,4.68966211499465
Merged-chr9-37236079-7,chr9,37235940,37236250,+,936.476196,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001145960, intron 10 of 18)","intron (NM_001145960, intron 10 of 18)",19643,NM_020258,56857,Mm.440037,NM_020258,ENSMUSG00000032122,Slc37a2,G3PP|Slc37a1|cI-2|ci2,"solute carrier family 37 (glycerol-3-phosphate transporter), member 2",protein-coding,86.05,73.68,89.86,73.87,12.92,22.74,9.62,9.14,88.56,148.85,54.55,159.77,55.66,48.58,31.03,22.47,140.03,177.91,11.74,53.39,59.68,339.09,328.09,126.66,193.71,333.41,81.18,170.14,24,118.09,236.9,High basal,6.25195270107099,3.49700650136927,6.65995103723668,4.95776801137568
Merged-chr19-21948158-5,chr19,21947690,21948523,+,936.325012,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,169766,NM_031997,83921,Mm.329776,NM_031997,ENSMUSG00000024754,Tmem2,-,transmembrane protein 2,protein-coding,4.96,3.2,4.71,2.19,40.59,26.79,20.25,9.45,61.5,81.19,59.1,64.67,150.03,317.98,314.68,243.47,6.61,0,20.68,39.72,102.75,90.69,301.12,175.91,204.67,248.29,896.9,1147.39,798.84,962.59,1100.88,Low basal,2.12547849215723,4.22414947092698,1.26559667159738,5.33609570315517
Merged-chr11-86819418-4,chr11,86819241,86819677,+,935.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11799,NM_026191,67487,Mm.260627,NM_026191,ENSMUSG00000018425,Dhx40,2410016C14Rik|ARG147|DDX40|PAD,DEAH (Asp-Glu-Ala-His) box polypeptide 40,protein-coding,19.03,22.43,25.58,24.89,21.61,18.7,12.15,15.44,0,0,0,0,0,0,0,0,49.54,58.16,15.65,52.09,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.48262243408956,3.86836903577567,5.13138598351177,4.97889932744223
Merged-chr9-100456475-8,chr9,100456099,100456740,+,935.2771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MTC|LTR|ERVL-MaLR,30054,NM_001033543,213208,Mm.242896,NM_001033543,ENSMUSG00000044244,Il20rb,AV228068|Fndc6|Gm186|Il20R2,interleukin 20 receptor beta,protein-coding,34.75,49.02,36.01,19.8,20.4,18.7,24.3,9.14,164.83,144.34,136.39,220.64,72.6,66.25,124.1,82.41,61.43,75.27,15.65,41.02,49.11,303.61,346.07,242.76,431.28,695.2,417.52,401.37,106.28,307.74,334.45,High basal,4.99816467119678,3.89863234535137,5.46380743457441,4.87447555412917
Merged-chr7-99432517-3,chr7,99432379,99432641,+,934.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001362168, intron 4 of 17)",MIR|SINE|MIR,-33494,NM_028145,72184,Mm.153585,NM_028145,ENSMUSG00000035298,Klhl35,2810406K13Rik,kelch-like 35,protein-coding,14.89,16.66,7.74,13.84,5.65,5.05,9.62,5.36,0,0,0,0,0,0,0,0,21.8,36.49,10.62,17.58,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,3.68216794336895,2.58549226227053,4.24018663501917,3.98338693508781
Merged-chr1-171845650-7,chr1,171845460,171845832,+,934.209534,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001289470, intron 2 of 8)","intron (NM_001289470, intron 2 of 8)",5949,NM_013489,12523,Mm.259115,NM_013489,ENSMUSG00000038147,Cd84,A130013D22Rik|CDw84|SLAMF5,CD84 antigen,protein-coding,76.12,58.63,35.67,50.82,31.91,26.79,29.36,26.78,95.94,85.7,100.02,79.89,19.36,39.75,44.32,18.73,103.7,115.18,30.18,69.01,81.59,185.32,116.85,94.99,127.92,205.72,150.77,174.51,72,93.04,202.06,High basal,5.66711902327612,4.61871228429911,6.13609159694589,5.6627037358821
Merged-chr8-10849713-6,chr8,10849467,10850035,+,934.055542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,32703,NR_040705,320014,Mm.403203,NR_040705,ENSMUSG00000109473,B930025P03Rik,-,RIKEN cDNA B930025P03 gene,ncRNA,41.37,55.1,63.27,65.02,39.98,26.79,37.46,41.28,0,0,0,0,0,0,0,0,113.61,124.31,41.92,100.26,76.31,0,0,0,0,0,0,0,0,0,0,Equal basal,5.72133724535109,4.93458332234091,6.25525791508086,5.96265583502278
Merged-chr2-165445148-5,chr2,165444904,165445383,+,933.890015,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_054055, intron 3 of 12)","intron (NM_054055, intron 3 of 12)",28054,NM_054055,114644,Mm.250738,NM_054055,ENSMUSG00000018459,Slc13a3,NaDC-3|NaDC3|SDCT2,"solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3",protein-coding,10.76,16.66,14.81,17.61,26.66,15.16,20.25,27.41,14.76,67.66,18.18,30.43,29.04,83.91,79.78,67.42,40.29,41.06,20.12,85.94,95.19,145.89,229.21,140.73,102.34,255.38,235.82,244.31,113.14,182.5,222.96,Equal basal,3.88264861864211,4.251516517267,4.74453352136592,5.64994214496763
Merged-chr3-127282583-9,chr3,127282269,127282797,+,933.648132,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001327938, intron 1 of 47)","intron (NM_001327938, intron 1 of 47)",121228,NR_105029,100862268,Mm.444603,NR_105029,ENSMUSG00000097456,LOC100862268,-,uncharacterized LOC100862268,ncRNA,38.89,30.76,54.52,64.93,14.94,13.65,15.19,11.03,430.51,419.49,313.69,433.67,135.51,225.23,57.62,168.56,85.21,110.62,13.41,33.86,36.26,962.08,1199.99,707.17,932,815.8,502.57,641.32,305.14,551.07,425.02,High basal,5.44139387419258,3.59536888273756,5.96775850806059,4.57381575582484
Merged-chr3-95676971-4,chr3,95676764,95677204,+,933.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001301705, intron 17 of 17)","intron (NM_001301705, intron 17 of 17)",10933,NM_144899,229595,Mm.490574,NM_144899,ENSMUSG00000015850,Adamtsl4,ADAMTSL-4|Tsrc1,ADAMTS-like 4,protein-coding,20.68,29.79,14.14,13.93,19.59,18.2,14.68,14.18,0,0,0,0,0,0,0,0,27.08,66.15,25.15,42.97,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.20182167893329,3.85526138261888,4.80196576775052,5.02118790352294
Merged-chr2-130491801-6,chr2,130491624,130491971,+,932.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001355161, intron 1 of 21)","intron (NM_001355161, intron 1 of 21)",41519,NM_001355161,19262,Mm.224246,NM_008980,ENSMUSG00000027303,Ptpra,Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha,"protein tyrosine phosphatase, receptor type, A",protein-coding,64.54,84.26,46.78,45.13,11.11,12.13,11.14,11.97,110.7,148.85,172.76,102.71,41.14,88.33,4.43,26.22,77.28,103.78,19,41.02,41.55,264.18,229.21,189.99,307.01,241.19,81.18,74.17,30.86,196.81,69.68,High basal,5.78806326947124,3.40255429065875,5.85320828883261,4.8862386585675
Merged-chr1-191964395-4,chr1,191964117,191964585,+,932.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13019,NM_001177900,74023,Mm.274393,NM_023727,ENSMUSG00000049353,Rd3,3322402L07Rik|rd-3|rd3,retinal degeneration 3,protein-coding,27.3,18.26,29.62,31.28,16.96,18.7,12.15,15.44,0,0,0,0,0,0,0,0,57.46,66.15,19.56,32.55,64.22,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66030561393823,3.78984343480835,5.32590512676415,4.99604717474954
Merged-chr13-34710458-4,chr13,34710276,34710638,+,932.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR11A2|LTR|ERVK,-29185,NM_138746,108161,Mm.41991,NM_138746,ENSMUSG00000038246,Fam50b,D0H6S2654E|X5L|XAP-5-like,"family with sequence similarity 50, member B",protein-coding,20.68,14.74,17.16,24.45,18.98,21.73,20.25,7.25,0,0,0,0,0,0,0,0,47.56,68.43,13.97,41.67,57.42,0,0,0,0,0,0,0,0,0,0,Equal basal,4.21717911118141,3.79058608745538,5.21673378431194,4.9030484624784
Merged-chrX-42058067-4,chrX,42057847,42058216,+,932.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MER5A|DNA|hAT-Charlie,-9805,NM_009688,11798,Mm.259879,NM_009688,ENSMUSG00000025860,Xiap,1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA,X-linked inhibitor of apoptosis,protein-coding,23.17,16.98,16.49,16.56,11.31,28.81,21.26,7.88,0,0,0,0,0,0,0,0,44.25,62.72,21.24,47.53,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.14925913056746,3.76231875807321,5.10524633157836,4.98944034746565
Merged-chr9-104057296-5,chr9,104057158,104057460,+,932.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_025692, intron 3 of 11)","intron (NM_025692, intron 3 of 11)",5812,NM_025692,66663,Mm.224935,NM_025692,ENSMUSG00000032557,Uba5,5730525G14Rik|AW240750|Ube1dc1,ubiquitin-like modifier activating enzyme 5,protein-coding,23.99,23.39,19.86,27.6,3.03,2.53,5.57,3.47,115.62,112.77,145.48,129.34,14.52,39.75,0,0,35.67,46.76,8.38,7.16,9.07,327.26,341.57,197.02,307.01,354.7,85.05,39.26,75.43,121.67,0,High basal,4.51310775253983,1.8467616781202,4.74981409192172,3.06432984419298
Merged-chr15-53157466-3,chr15,53157289,53157630,+,931.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010162, intron 1 of 10)","intron (NM_010162, intron 1 of 10)",188724,NM_010162,14042,Mm.309395,NM_010162,ENSMUSG00000061731,Ext1,AA409028,exostoses (multiple) 1,protein-coding,21.1,41.33,27.6,30.49,17.57,14.15,7.59,1.58,0,0,0,0,0,0,0,0,71.33,98.08,11.18,33.86,70.26,0,0,0,0,0,0,0,0,0,0,High basal,4.81766333553102,2.8255769118092,5.75647395407951,4.80009758043739
Merged-chr4-70378189-4,chr4,70378062,70378325,+,931.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145990, intron 4 of 36)",GSAT_MM|Satellite|Satellite,32242,NM_001313762,214444,Mm.370777,NM_145990,ENSMUSG00000039298,Cdk5rap2,2900018K03Rik|an|mKIAA1633,CDK5 regulatory subunit associated protein 2,protein-coding,21.51,11.53,24.9,28.13,21.61,20.22,17.72,14.81,0,0,0,0,0,0,0,0,40.95,39.92,74.34,35.81,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,4.33329180191624,4.00366349645623,4.73642066870256,5.43071145246387
Merged-chr17-43069051-4,chr17,43068890,43069228,+,931.033325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_178589, intron 4 of 5)","intron (NM_178589, intron 4 of 5)",52504,NM_178589,94185,Mm.200792,NM_178589,ENSMUSG00000023915,Tnfrsf21,AA959878|DR6|R74815|TR7,"tumor necrosis factor receptor superfamily, member 21",protein-coding,14.07,12.17,16.15,14.02,0.81,3.03,2.02,0.63,44.28,18.04,100.02,68.47,14.52,53,4.43,18.73,27.08,49.04,3.35,5.21,6.8,268.12,148.31,144.25,277.77,312.13,92.78,143.97,68.57,128.82,83.61,High basal,3.82090382947721,1.12858866933108,4.59273845206742,2.43528997053969
Merged-chr10-4093028-4,chr10,4092826,4093223,+,930.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001170785, intron 24 of 27)","intron (NM_001170785, intron 24 of 27)",119949,NM_172308,270685,Mm.184752,NM_172308,ENSMUSG00000040675,Mthfd1l,2410004L15Rik|AI647056|Fthfsdc1,methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like,protein-coding,49.23,28.83,49.47,64.4,15.75,19.21,16.7,7.56,0,0,0,0,0,0,0,0,118.23,107.2,12.3,43.62,54.4,0,0,0,0,0,0,0,0,0,0,High basal,5.45924370539876,3.64736273134972,6.1785365871429,4.84080798268702
Merged-chr6-94159430-4,chr6,94159211,94159628,+,929.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_130996, intron 1 of 1)","intron (NR_130996, intron 1 of 1)",78023,NR_130996,78178,Mm.452749,NR_130996,ENSMUSG00000045095,4930511A08Rik,-,RIKEN cDNA 4930511A08 gene,ncRNA,55.44,104.12,64.28,81.4,22.62,15.16,19.24,11.97,0,0,0,0,0,0,0,0,120.21,128.87,24.59,68.36,80.08,0,0,0,0,0,0,0,0,0,0,High basal,6.13264481218474,3.89805890605362,6.32117949440485,5.55346615390533
Merged-chr7-106612915-7,chr7,106612752,106613061,+,928.363953,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001277180, intron 2 of 2)","intron (NM_001277180, intron 2 of 2)",31739,NM_001277179,434223,Mm.276443,NM_001277179,NA,Gm1966,-,predicted gene 1966,protein-coding,37.23,32.68,18.85,40.66,16.56,21.23,19.24,19.22,71.34,90.21,68.19,152.17,31.46,30.91,31.03,41.2,74.64,87.81,16.77,50.13,47.6,516.53,359.55,175.91,504.38,468.2,259.02,191.96,99.43,171.76,97.55,Equal basal,4.91080635694951,4.06160802441762,5.71029064258605,4.98539328365124
Merged-chr1-153981035-3,chr1,153980841,153981209,+,928.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,81096,NM_008131,14645,Mm.210745,NM_008131,ENSMUSG00000026473,Glul,GS|Glns,glutamate-ammonia ligase (glutamine synthetase),protein-coding,14.48,15.38,13.46,22.43,9.49,10.61,12.15,4.73,0,0,0,0,0,0,0,0,29.06,43.34,17.33,30.6,20.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.99681283601026,3.00129403254905,4.5554684856764,4.38204971941635
Merged-chr4-106429292-4,chr4,106429107,106429510,+,928.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_183225, intron 62 of 67)","intron (NM_183225, intron 62 of 67)",35017,NM_153565,100102,Mm.133268,NM_153565,ENSMUSG00000044254,Pcsk9,AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9,proprotein convertase subtilisin/kexin type 9,protein-coding,33.1,17.94,35.34,42.32,16.76,12.64,32.9,11.97,0,0,0,0,0,0,0,3.75,92.47,103.78,19.56,52.74,63.46,0,0,0,0,0,0,0,0,0,0,High basal,4.89192271214561,3.89628883992118,5.98058286622191,5.21520649175056
Merged-chr16-12471746-4,chr16,12471538,12471929,+,927.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-339657,NR_040507,75493,Mm.396146,NR_040507,ENSMUSG00000101565,1700003L19Rik,-,RIKEN cDNA 1700003L19 gene,ncRNA,22.34,24.67,4.04,22.96,19.59,23.25,17.21,9.14,0,0,0,0,0,0,0,0,37.65,58.16,24.03,73.57,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.935867881257,3.85231472404717,4.93957634374187,5.21613521603707
Merged-chr16-45376026-3,chr16,45375880,45376184,+,927.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,33021,NM_001358443,17470,Mm.245851,NM_010818,ENSMUSG00000022661,Cd200,Mox2|OX2,CD200 antigen,protein-coding,31.03,21.46,26.25,20.77,4.85,3.03,3.54,2.84,2.46,67.66,27.28,22.82,0,17.67,0,18.73,56.14,70.71,7.83,26.69,22.66,78.86,26.97,24.63,43.86,106.41,27.06,21.81,20.57,35.78,41.81,High basal,4.57151301667643,1.8940879614016,5.35640186021656,4.00733080025155
Merged-chr17-20949884-2,chr17,20949773,20949992,+,926.916626,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_016891, intron 1 of 14)",MLT1C|LTR|ERVL-MaLR,4428,NM_016891,51792,Mm.294138,NM_016891,ENSMUSG00000007564,Ppp2r1a,6330556D22Rik|PP2A|PR65,"protein phosphatase 2, regulatory subunit A, alpha",protein-coding,3.31,0.96,0,1.05,3.63,6.07,7.59,4.41,14.76,0,0,0,0,26.5,8.86,22.47,0.66,2.28,14.53,29.95,41.55,0,8.99,0,10.96,42.56,173.97,130.88,54.86,157.45,125.42,Low basal,0.905776907732268,2.39887262861067,0.872589666057992,4.61693096171023
Merged-chr10-118857306-5,chr10,118857121,118857494,+,926.380005,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,11596,NM_001014390,69181,Mm.45565,NM_001014390,ENSMUSG00000028630,Dyrk2,1810038L18Rik,dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2,protein-coding,22.34,33.96,18.17,23.48,5.05,5.05,14.68,2.21,34.44,94.72,0,83.69,29.04,92.74,26.59,41.2,41.61,85.53,3.35,17.58,40.04,327.26,323.59,182.95,160.82,297.94,146.91,222.5,99.43,161.03,250.83,High basal,4.54301131210122,2.41060635187245,5.28057420066442,3.72306166128969
Merged-chr3-14833013-3,chr3,14832863,14833141,+,926.299988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-24637,NM_009799,12346,Mm.273195,NM_009799,ENSMUSG00000027556,Car1,AW555628|Ca1|Car-1,carbonic anhydrase 1,protein-coding,38.47,12.17,63.61,56.52,7.27,5.56,15.19,2.84,0,0,0,0,0,0,0,0,108.98,93.52,8.94,28,46.84,0,0,0,0,0,0,0,0,0,0,High basal,5.1227289461566,2.62609505855692,6.02371787534017,4.42226699214517
Merged-chr3-86894647-8,chr3,86894491,86894807,+,926.283325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001195500, intron 2 of 11)","intron (NM_001195500, intron 2 of 11)",26235,NM_001195499,70762,Mm.44490,NM_027539,ENSMUSG00000028078,Dclk2,6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2,doublecortin-like kinase 2,protein-coding,32.27,41.33,37.36,41.97,18.78,15.16,33.41,14.18,76.26,76.68,31.82,125.54,53.24,141.32,53.19,86.15,87.85,57.02,20.68,59.25,44.57,303.61,292.13,119.62,208.33,262.48,220.36,213.77,113.14,225.44,229.93,High basal,5.18542032798709,4.06880570440526,5.5221793053076,5.13030687888113
Merged-chr6-135951846-4,chr6,135951640,135952004,+,926.029175,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008171, intron 4 of 14)","intron (NM_008171, intron 4 of 14)",221689,NM_008171,14812,Mm.436649,NM_008171,ENSMUSG00000030209,Grin2b,AW490526|GluN2B|NR2B|Nmdar2b,"glutamate receptor, ionotropic, NMDA2B (epsilon 2)",protein-coding,2.07,0.64,4.71,5.52,21.41,14.66,16.2,11.97,81.18,31.57,54.55,22.82,77.43,79.49,4.43,63.68,4.62,6.84,19,52.74,57.42,145.89,179.77,52.77,146.2,127.69,347.93,397,240,289.85,181.16,Low basal,1.78380798071915,3.79910301707376,2.19206512616091,5.15476603941219
Merged-chr8-61665135-6,chr8,61664960,61665359,+,924.863892,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001293772, intron 10 of 21)","intron (NM_001293772, intron 10 of 21)",-73990,NM_001293774,72333,Mm.29933,NM_001081390,ENSMUSG00000058056,Palld,2410003B16Rik|6030492A02,"palladin, cytoskeletal associated protein",protein-coding,30.61,18.26,26.59,34.26,13.73,12.13,18.73,9.77,14.76,18.04,27.28,19.02,38.72,48.58,8.86,14.98,51.52,57.02,15.65,39.72,30.22,185.32,179.77,105.55,168.13,205.72,185.57,231.22,109.71,239.75,83.61,High basal,4.6898583039411,3.56010821575633,5.14507259754122,4.63449133611688
Merged-chr3-31327991-4,chr3,31327859,31328165,+,924.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-17693,NM_172861,241919,Mm.285366,NM_172861,ENSMUSG00000069072,Slc7a14,A930013N06|BC061928,"solute carrier family 7 (cationic amino acid transporter, y+ system), member 14",protein-coding,21.51,20.18,20.87,20.24,17.57,24.26,10.63,8.82,0,0,0,0,0,0,0,0,36.33,69.57,17.89,41.02,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.33989123678534,3.65782111786791,5.04033913967512,5.03329735300397
Merged-chr12-84854707-3,chr12,84854525,84854856,+,924.222229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013589, intron 2 of 34)","intron (NM_013589, intron 2 of 34)",-21112,NR_028577,100303738,Mm.479389,NR_028577,ENSMUSG00000092130,D030025P21Rik,-,RIKEN cDNA D030025P21 gene,ncRNA,6.62,10.89,31.64,20.85,4.85,7.58,11.14,6.62,0,0,0,0,0,0,0,0,52.18,50.18,10.06,25.39,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,3.90855131478134,2.77426986537082,5.06481269115828,4.33016498838082
Merged-chr9-13314149-7,chr9,13314004,13314281,+,923.714294,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B1_Mur2|SINE|Alu,67186,NM_025534,66396,Mm.290620,NM_025534,ENSMUSG00000079084,Ccdc82,2310043N13Rik,coiled-coil domain containing 82,protein-coding,50.47,26.91,33.66,47.58,9.09,11.12,6.58,1.89,369.01,166.89,245.49,273.9,104.05,114.83,31.03,89.9,48.22,77.55,8.38,28.65,21.15,824.07,885.39,506.63,880.83,879.65,467.78,440.63,301.71,536.76,473.8,High basal,5.20646460242738,2.5740163360688,5.3145137539754,4.03906759916078
Merged-chr13-93901457-3,chr13,93901298,93901633,+,923.611084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009712, intron 6 of 7)","intron (NM_009712, intron 6 of 7)",110688,NR_049198,100885837,NA,NR_049198,ENSMUSG00000093480,Mir5624,Gm25075|mir-5624|mmu-mir-5624,microRNA 5624,ncRNA,18.62,17.62,17.84,28.13,5.86,10.11,3.54,10.71,0,0,0,0,0,0,0,0,26.42,54.74,8.38,31.9,34.75,0,0,0,0,0,0,0,0,0,0,High basal,4.28966148197534,2.73230719940749,4.65248684555424,4.31519711570252
Merged-chr3-27692390-4,chr3,27692240,27692526,+,923.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001356953, intron 1 of 26)","intron (NM_001356953, intron 1 of 26)",18069,NM_001356953,72007,Mm.38832,NM_173182,ENSMUSG00000039286,Fndc3b,1600019O04Rik|AW550168|Fad104|mKIAA4164,fibronectin type III domain containing 3B,protein-coding,7.45,15.7,11.11,14.63,13.33,5.56,17.72,10.71,0,0,0,0,0,0,0,0,23.12,41.06,20.68,29.3,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.56810659438675,3.29984922464209,4.36135767114706,4.61092657746934
Merged-chr19-34435416-4,chr19,34435191,34435628,+,923.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,39726,NM_009890,12642,Mm.30824,NM_009890,ENSMUSG00000050370,Ch25h,AI462618|m25OH,cholesterol 25-hydroxylase,protein-coding,30.61,20.82,36.01,38.73,26.45,10.11,18.22,13.86,0,0,0,0,0,0,0,0,50.2,123.17,19.56,57.29,67.99,0,0,0,0,0,0,0,0,0,0,Equal basal,4.8863839130896,3.84716599724065,5.67040229068463,5.28659014544083
Merged-chr14-74983227-2,chr14,74983100,74983372,+,922.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_046078, intron 2 of 2)","intron (NR_046078, intron 2 of 2)",8150,NR_046078,100043169,Mm.145900,NR_046078,ENSMUSG00000115019,Gm4278,-,predicted gene 4278,ncRNA,8.69,15.38,8.75,14.63,9.9,11.12,7.59,6.62,0,0,0,0,0,0,0,0,15.19,51.32,10.62,32.55,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,3.53324544542738,2.98754290631968,4.23429913513976,4.48683864598698
Merged-chr10-13835854-5,chr10,13835674,13835987,+,921.513367,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_025446, intron 1 of 5)","intron (NM_025446, intron 1 of 5)",33127,NM_025446,66253,Mm.45755,NM_025446,ENSMUSG00000019806,Aig1,1500031O19Rik|AV064870|AW413422|CGI-103,androgen-induced 1,protein-coding,16.13,34.92,14.81,20.59,4.24,5.56,2.02,2.52,24.6,22.55,0,110.32,2.42,44.16,0,0,37.65,80.97,9.5,42.32,57.42,244.46,278.65,73.88,80.41,92.22,177.83,109.07,68.57,157.45,174.19,High basal,4.31347523763735,1.89217608732858,5.17211603063171,4.73582003965583
Merged-chr12-102320109-8,chr12,102319855,102320291,+,921.197937,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177620, intron 2 of 9)",ORR1E|LTR|ERVL-MaLR,36432,NM_001161365,217835,Mm.24145,NM_177620,ENSMUSG00000044456,Rin3,6430500K07|C86933,Ras and Rab interactor 3,protein-coding,16.96,10.89,21.88,18.23,17.17,13.14,11.64,11.03,68.88,76.68,9.09,144.56,89.53,44.16,57.62,119.86,31.04,36.49,21.24,30.6,27.95,295.72,332.58,147.77,317.98,383.07,278.35,235.59,147.43,150.29,480.77,Equal basal,4.02655780781113,3.5371489021189,4.48236049836922,4.61924407062407
Merged-chr4-95084156-3,chr4,95084000,95084294,+,920.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1E|LTR|ERVL-MaLR,-31925,NM_010591,16476,Mm.275071,NM_010591,ENSMUSG00000052684,Jun,AP-1|Junc|c-jun,jun proto-oncogene,protein-coding,9.93,16.34,15.14,17.7,8.48,8.09,13.16,11.03,0,0,0,0,0,0,0,0,26.42,46.76,14.53,26.69,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,3.84677896895302,3.20906265527226,4.54268889617274,4.51985850473952
Merged-chr10-44449839-4,chr10,44449603,44450113,+,919.9375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007548, intron 3 of 6)","intron (NM_007548, intron 3 of 6)",8890,NM_007548,12142,Mm.4800,NM_007548,ENSMUSG00000038151,Prdm1,Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo,"PR domain containing 1, with ZNF domain",protein-coding,21.51,14.1,10.77,16.39,23.63,10.11,14.17,17.01,0,0,0,0,0,0,0,0,24.44,36.49,20.68,41.67,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.92794575774826,3.79477838595052,4.31805259770792,4.94118451967888
Merged-chr2-130930179-5,chr2,130929993,130930387,+,919.808899,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009730, intron 1 of 28)",B4|SINE|B4,23695,NM_009730,11990,Mm.119936,NM_009730,ENSMUSG00000027312,Atrn,AW558010|Mgca|mg,attractin,protein-coding,23.99,14.74,17.84,26.29,0.4,0.51,3.04,4.1,51.66,54.13,131.84,129.34,7.26,0,62.05,56.19,32.36,52.46,5.59,4.56,9.07,323.32,251.68,168.88,211.98,446.92,154.64,104.7,96,189.66,153.29,High basal,4.30792858915145,1.0908871495188,4.76255978910446,2.7119020549999
Merged-chr2-28402349-4,chr2,28402212,28402477,+,919.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-45597,NM_001005420,241289,Mm.330095,NM_001005420,ENSMUSG00000035829,Ppp1r26,Gm347|Kiaa0649|mKIAA0649,"protein phosphatase 1, regulatory subunit 26",protein-coding,18.2,15.7,15.14,15.95,6.87,6.07,16.7,11.97,0,0,0,0,0,0,0,0,34.35,30.79,17.89,38.41,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,3.99932963673255,3.16062530258507,4.43601555029063,4.63230455773902
Merged-chr7-5099985-6,chr7,5099715,5100223,+,919.344421,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,16942,NM_001145013,192658,Mm.28764,NM_138954,ENSMUSG00000035191,Rfpl4,D7Ertd486e|Rfpl4a,ret finger protein-like 4,protein-coding,16.96,17.94,13.46,21.82,11.31,14.15,5.57,11.66,115.62,45.11,40.92,110.32,48.4,44.16,31.03,97.39,43.59,49.04,16.21,29.95,18.13,307.55,283.14,161.84,175.44,184.44,162.37,130.88,92.57,168.19,41.81,Equal basal,4.09244256743151,3.20995830806849,4.92277210304024,4.28871599681503
Merged-chr6-37258728-3,chr6,37258608,37258852,+,919.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001347104, intron 1 of 32)","intron (NM_001347104, intron 1 of 32)",41246,NM_001081206,320127,Mm.119469,NM_001081206,ENSMUSG00000038665,Dgki,6430604M11Rik|C130010K08Rik,"diacylglycerol kinase, iota",protein-coding,33.92,9.29,12.79,21.29,2.42,7.08,7.09,0,0,0,0,0,0,0,0,0,39.63,34.21,8.38,21.49,34,0,0,0,0,0,0,0,0,0,0,High basal,4.08519692184142,1.70970990151073,4.60752135055191,4.12418367472784
Merged-chr14-70971633-7,chr14,70971304,70971852,+,918.904785,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001302094, intron 6 of 7)","intron (NM_001302094, intron 6 of 7)",81471,NM_001302094,14586,Mm.32619,NM_008115,ENSMUSG00000022103,Gfra2,-,glial cell line derived neurotrophic factor family receptor alpha 2,protein-coding,37.23,41.01,64.62,54.68,2.02,5.56,5.57,6.3,83.64,184.94,150.02,72.28,16.94,44.16,35.46,67.42,74.64,101.5,7.27,14.97,15.87,496.81,485.39,260.35,559.2,361.79,289.95,314.11,140.57,229.02,104.51,High basal,5.52647309939239,2.21403660616712,5.81280927995205,3.55501157222323
Merged-chr7-19818604-4,chr7,19818419,19818787,+,918.8125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_033601, intron 2 of 8)","intron (NM_033601, intron 2 of 8)",4152,NM_033601,12051,Mm.439658,NM_033601,ENSMUSG00000053175,Bcl3,AI528691|Bcl-3,B cell leukemia/lymphoma 3,protein-coding,19.44,19.86,19.52,12.35,13.93,9.6,14.68,15.75,0,0,0,0,0,0,0,0,46.9,50.18,13.41,50.78,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.10722961191658,3.55526963603092,4.98988948638617,4.93158953738356
Merged-chr13-20428816-4,chr13,20428625,20428975,+,917.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080288, intron 15 of 21)","intron (NM_080288, intron 15 of 21)",-44190,NM_198093,140580,Mm.342392,NM_080288,ENSMUSG00000041112,Elmo1,6330578D22Rik|C230095H21Rik|CED-12,engulfment and cell motility 1,protein-coding,9.52,7.05,10.77,23.92,1.21,3.03,1.52,0.63,113.16,135.32,109.11,64.67,77.43,57.41,26.59,22.47,42.27,20.53,3.91,7.81,12.09,591.44,368.54,253.32,442.24,397.26,239.69,139.61,96,114.51,236.9,High basal,3.54787515177534,1.06835603644519,4.30770065563919,2.89664913696354
Merged-chr19-44384651-6,chr19,44384486,44384809,+,917.577759,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLTR14|LTR|ERV1,23062,NM_009127,20249,Mm.267377,NM_009127,ENSMUSG00000037071,Scd1,AA589638|AI265570|Scd|Scd-1|ab,stearoyl-Coenzyme A desaturase 1,protein-coding,12.82,26.91,22.89,18.23,25.85,15.67,17.72,6.62,27.06,49.62,31.82,15.22,12.1,13.25,4.43,14.98,29.72,34.21,12.86,37.11,60.44,145.89,175.28,91.48,84.06,170.25,181.7,200.68,106.28,246.91,250.83,Equal basal,4.2560974304176,3.69753126040576,4.40805802940049,4.83519846176628
Merged-chr15-25474019-3,chr15,25473811,25474285,+,917.200012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,59856,NR_027376,432939,Mm.146555,NM_001013791,NA,Gm5468,100040583|EG432939,predicted gene 5468,ncRNA,17.38,18.26,19.86,15.6,7.88,10.11,5.06,5.36,0,0,0,0,0,0,0,0,38.31,59.3,12.86,20.18,36.26,0,0,0,0,0,0,0,0,0,0,High basal,4.12225914222026,2.71688341975715,4.96527237916701,4.31781909837993
Merged-chr16-84581688-3,chr16,84581521,84581819,+,917.166687,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER1A|Other|Other,-98119,NR_040537,78023,Mm.243853,NR_040537,NA,4930529L06Rik,-,RIKEN cDNA 4930529L06 gene,ncRNA,0.83,1.92,0,0.53,8.89,6.07,5.06,2.84,22.14,0,0,0,60.5,8.83,0,0,3.3,0,7.27,27.34,36.26,126.17,116.85,112.58,160.82,170.25,289.95,283.57,185.14,365,167.22,Low basal,0.698164031859597,2.4047154569896,0.880695428734025,4.20094949849497
Merged-chr12-26436515-6,chr12,26436349,26436754,+,917,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,19901,NM_021384,58185,Mm.24045,NM_021384,ENSMUSG00000020641,Rsad2,2510004L01Rik|Vig1|cig5,radical S-adenosyl methionine domain containing 2,protein-coding,32.68,51.26,35,32.33,2.83,2.02,6.58,9.14,157.45,383.41,159.12,247.27,36.3,26.5,8.86,0,73.32,98.08,3.91,16.93,22.66,642.7,579.77,387.01,526.31,794.52,177.83,209.41,140.57,243.33,404.12,High basal,5.15248746143284,2.21361164952525,5.77586760370043,3.50699424432864
Merged-chr18-60740588-8,chr18,60740420,60740757,+,916.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001348146, intron 1 of 6)","intron (NM_001348146, intron 1 of 6)",6158,NM_001348101,15531,Mm.181862,NM_008306,ENSMUSG00000054008,Ndst1,1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo,N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1,protein-coding,12,20.18,14.81,9.64,16.76,14.66,19.74,8.19,73.8,126.3,140.93,45.65,72.6,123.66,137.4,44.95,25.76,38.77,14.53,33.86,46.84,252.35,368.54,172.4,303.36,354.7,247.42,357.74,168,297.01,348.38,Equal basal,3.76717476508234,3.64451232929783,4.39578039167646,4.72931094210014
Merged-chr11-3141132-4,chr11,3140782,3141448,+,916.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 21 of 32)",RMER4A|LTR|ERVK,17094,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,183.27,106.36,170.3,102.87,19.39,22.24,21.26,11.03,0,0,0,0,0,0,0,0,101.06,152.82,110.67,115.24,161.68,0,0,0,0,0,0,0,0,0,0,High basal,7.00058294425365,3.97184159645392,6.31892537473928,6.84687284769103
Merged-chr6-146616756-6,chr6,146616228,146617037,+,916.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026281, intron 6 of 11)","intron (NM_026281, intron 6 of 11)",17960,NM_026281,67623,Mm.278037,NM_026281,ENSMUSG00000040234,Tm7sf3,2010003B14Rik|NARP1,transmembrane 7 superfamily member 3,protein-coding,28.13,31.08,72.7,56.6,1.21,8.09,2.53,3.15,255.85,275.15,504.63,365.2,43.56,39.75,39.89,44.95,87.19,119.75,4.47,18.88,19.64,954.19,867.41,608.66,928.35,993.15,216.49,165.78,171.43,314.9,146.32,High basal,5.38246661764991,1.82351978155463,6.04036677414834,3.54621474820114
Merged-chr16-55731168-3,chr16,55730949,55731352,+,915.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,90988,NM_001159394,80859,Mm.247272,NM_030612,ENSMUSG00000035356,Nfkbiz,AA408868|INAP|Mail,"nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta",protein-coding,16.13,4.81,12.12,15.6,7.47,0.51,10.12,6.3,0,0,0,0,0,0,0,0,29.06,35.35,11.74,24.74,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.48730066177732,2.16892685262278,4.41506486740426,4.34924414488126
Merged-chr11-35657796-3,chr11,35657610,35657968,+,915,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011412, intron 23 of 35)",Lx8|LINE|L1,40973,NR_029799,723924,NA,NR_029799,ENSMUSG00000065583,Mir218-2,Mirn218-2|mir-218-2,microRNA 218-2,ncRNA,0.83,2.88,1.68,4.91,5.45,10.61,5.06,7.88,36.9,36.09,0,38.04,50.82,88.33,35.46,37.46,5.28,6.84,10.62,23.44,22.66,106.46,35.95,56.29,120.61,85.13,390.46,226.86,209.14,418.67,83.61,Equal basal,1.56225971539374,2.73062122058861,2.26733769971045,4.08397594817945
Merged-chr19-32225307-3,chr19,32225173,32225459,+,914.277771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_144792, intron 4 of 9)","intron (NM_144792, intron 4 of 9)",-14303,NM_001168526,208449,Mm.329810,NM_144792,ENSMUSG00000040451,Sgms1,9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23,sphingomyelin synthase 1,protein-coding,11.17,12.81,11.78,15.33,9.09,9.1,6.07,7.25,0,0,0,0,0,0,0,0,34.35,41.06,12.3,18.23,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,3.6612470545974,2.88016481379826,4.63351228187172,4.27072402017562
Merged-chr8-34908750-3,chr8,34908585,34908896,+,914.222229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_175091, intron 3 of 26)","intron (NM_175091, intron 3 of 26)",56950,NM_175091,21951,Mm.88364,NM_175091,ENSMUSG00000031529,Tnks,4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1,"tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase",protein-coding,6.62,4.49,7.07,15.33,6.66,7.08,6.07,8.19,7.38,27.06,27.28,22.82,7.26,0,26.59,29.97,13.87,15.97,15.65,23.44,29.46,31.54,67.42,10.55,102.34,70.94,139.17,82.89,54.86,128.82,0,Equal basal,3.0077300236031,2.75711701175301,3.3842863870847,4.37996741934658
Merged-chr9-40563711-10,chr9,40563066,40564135,+,913.919983,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-32217,NM_001357617,235283,Mm.138434,NM_172768,ENSMUSG00000040111,Gramd1b,3222402H23|A930008A22Rik|AI593249|mKIAA1201,GRAM domain containing 1B,protein-coding,38.89,33.64,44.43,40.57,57.96,55.6,56.19,34.34,100.86,130.81,150.02,68.47,96.79,194.32,172.85,82.41,78.6,116.32,34.1,111.98,185.1,481.04,534.83,344.79,409.35,432.73,610.82,658.77,431.99,529.6,696.76,Equal basal,5.23032101847943,5.39871592021581,5.9462106780691,6.33852436393486
Merged-chr15-67714436-8,chr15,67714286,67714572,+,912.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,487660,NR_045140,69334,Mm.63770,NR_045140,ENSMUSG00000102069,1700012I11Rik,-,RIKEN cDNA 1700012I11 gene,ncRNA,52.95,62.15,39.38,26.29,44.83,54.08,31.38,9.45,98.4,49.62,95.47,110.32,53.24,88.33,75.35,86.15,70.67,93.52,24.03,104.17,105.77,579.61,566.29,246.28,383.77,844.18,537.37,506.07,291.42,504.56,536.51,Equal basal,5.36174009650517,4.65869516903075,5.71616881566244,5.87384123568792
Merged-chr9-121904584-4,chr9,121904408,121904752,+,912.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001276719, intron 2 of 3)","intron (NM_001276719, intron 2 of 3)",6225,NM_021609,59289,Mm.258105,NM_021609,ENSMUSG00000044534,Ackr2,AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6,atypical chemokine receptor 2,protein-coding,10.76,16.98,10.43,15.16,16.56,7.58,22.27,8.82,0,0,0,0,0,0,0,0,39.63,35.35,24.59,48.18,82.35,0,0,0,0,0,0,0,0,0,0,Equal basal,3.70352858435879,3.49526818461868,4.63001105682646,5.40221504910298
Merged-chr1-54449056-4,chr1,54448884,54449231,+,911.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10031,NM_001033194,98488,Mm.25856,NM_001033194,ENSMUSG00000041303,Gtf3c3,TF3C-gamma|TFIIIC102,"general transcription factor IIIC, polypeptide 3",protein-coding,23.99,21.78,33.32,28.39,22.62,16.68,20.25,8.51,0,0,0,0,0,0,0,0,57.46,83.25,12.3,44.92,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.68661307611254,3.81167452718398,5.48789237470549,4.92126022798815
Merged-chr2-121509779-4,chr2,121509641,121509904,+,911.604187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001290987, intron 1 of 11)","intron (NM_001290987, intron 1 of 11)",3049,NM_001290986,241627,Mm.293284,NM_030234,ENSMUSG00000027242,Wdr76,5830411K18Rik|6030457D09|AA517836,WD repeat domain 76,protein-coding,21.51,18.58,14.47,19.1,11.91,14.15,13.67,7.25,0,0,0,0,0,0,0,7.49,34.35,51.32,17.89,27.34,34,0,0,0,0,0,0,0,0,0,0,Equal basal,4.16588643458257,3.35137767830057,4.78839559469575,4.57776055723818
Merged-chr5-122844019-6,chr5,122843817,122844204,+,911.233337,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR30B_MM|LTR|ERV1,-6178,NM_030564,80751,Mm.388529,NM_030564,ENSMUSG00000029474,Rnf34,AW061037|AW536122|BC004042|C88279|RIFF,ring finger protein 34,protein-coding,2.07,7.05,2.69,2.28,21.2,11.12,16.2,10.71,103.32,126.3,154.57,19.02,53.24,132.49,97.51,153.57,4.62,5.7,14.53,59.9,59.68,449.5,422.47,302.57,394.73,241.19,684.27,588.96,339.42,629.8,606.18,Low basal,1.93052151464186,3.67618194023322,2.08996893147312,5.10914352035296
Merged-chr6-57706871-1,chr6,57706760,57706983,+,910.666687,.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133737, intron 1 of 8)","intron (NM_133737, intron 1 of 8)",4416,NM_133737,71835,Mm.274904,NM_133737,ENSMUSG00000062190,Lancl2,1700003F10Rik,LanC (bacterial lantibiotic synthetase component C)-like 2,protein-coding,9.93,5.13,3.03,3.68,5.05,7.08,7.59,5.04,0,0,0,0,0,0,0,0,7.27,15.97,12.3,22.14,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,2.46003975924489,2.56530022827398,2.97492859218985,4.33939879081819
Merged-chr9-63793879-4,chr9,63793743,63794049,+,910.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-35902,NM_016769,17127,Mm.7320,NM_016769,ENSMUSG00000032402,Smad3,AU022421|Madh3,SMAD family member 3,protein-coding,17.79,16.02,8.41,18.31,11.91,11.12,13.67,7.88,0,0,0,0,0,0,0,0,35.67,39.92,12.86,29.95,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.84188894314743,3.29989111708171,4.6402457678143,4.56093601556741
Merged-chr5-149284983-4,chr5,149284678,149285157,+,910.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009663, intron 3 of 4)",MTD|LTR|ERVL-MaLR,19913,NM_009663,11690,Mm.19844,NM_009663,ENSMUSG00000060063,Alox5ap,Flap,arachidonate 5-lipoxygenase activating protein,protein-coding,36.82,24.67,23.9,23.66,19.99,16.17,26.32,17.33,0,0,0,0,0,0,0,0,62.75,63.86,21.24,50.78,46.09,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6891520532119,4.09952947108708,5.3633021457891,5.08586424195966
Merged-chr17-10704333-3,chr17,10704149,10704503,+,909.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027032, intron 2 of 4)",L1MEf|LINE|L1,135865,NM_027032,69310,Mm.18889,NM_027032,ENSMUSG00000037196,Pacrg,1700008H23Rik,PARK2 co-regulated,protein-coding,33.51,32.04,37.36,33.21,3.63,17.18,6.07,8.19,0,0,0,0,0,0,0,0,75.96,78.69,11.18,29.3,24.93,0,0,0,0,0,0,0,0,0,0,High basal,5.02565678403737,2.88154412087244,5.64526381607545,4.25243538936503
Merged-chr11-3152519-3,chr11,3152349,3152832,+,909.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 14 of 32)","intron (NM_030207, intron 14 of 32)",28569,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,43.02,43.57,47.45,46.35,1.62,0,0,1.26,0,0,0,0,0,0,0,0,29.06,79.83,65.95,59.25,81.59,0,0,0,0,0,0,0,0,0,0,High basal,5.42749794778589,0.602844414130006,4.9828840758339,5.9606000089054
Merged-chr19-11107960-4,chr19,11107779,11108167,+,909.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027058, intron 4 of 6)","intron (NM_027058, intron 4 of 6)",22905,NM_027058,69369,Mm.391200,NM_027058,ENSMUSG00000024729,1700017D01Rik,-,RIKEN cDNA 1700017D01 gene,protein-coding,33.92,24.35,31.3,30.93,18.78,9.1,13.67,11.34,0,0,0,0,0,0,0,0,62.09,102.64,11.74,46.23,67.24,0,0,0,0,0,0,0,0,0,0,High basal,4.8517178426112,3.52107470964144,5.69057967059529,4.94634449013197
Merged-chr9-116137875-6,chr9,116137717,116138008,+,909.327759,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029575, intron 1 of 6)",MLT2C1|LTR|ERVL,37501,NM_009371,21813,Mm.172346,NM_009371,ENSMUSG00000032440,Tgfbr2,1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII,"transforming growth factor, beta receptor II",protein-coding,22.75,39.73,7.74,19.1,14.74,21.73,16.2,8.82,36.9,31.57,31.82,15.22,12.1,48.58,31.03,7.49,48.88,51.32,13.41,37.11,62.71,169.55,260.67,109.07,190.06,191.54,181.7,191.96,92.57,178.92,229.93,Equal basal,4.22845722065443,3.70482338901628,5.03456100934101,4.87189472319915
Merged-chr9-120776789-4,chr9,120776571,120776967,+,909.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,138481,NR_040742,76402,Mm.436588,NR_040742,ENSMUSG00000100146,1700020M21Rik,-,RIKEN cDNA 1700020M21 gene,ncRNA,139.83,139.36,79.09,55.29,23.02,14.66,17.72,11.97,0,0,0,0,0,0,0,0,136.06,132.29,17.89,59.25,58.17,0,0,0,0,0,0,0,0,0,0,High basal,6.50301412595952,3.84398884272503,6.42822103023628,5.18752616741575
Merged-chr16-55687752-4,chr16,55687569,55687960,+,909.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,134374,NM_001159394,80859,Mm.247272,NM_030612,ENSMUSG00000035356,Nfkbiz,AA408868|INAP|Mail,"nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta",protein-coding,28.96,24.99,12.12,16.04,14.54,19.21,15.19,8.19,0,0,0,0,0,0,0,0,32.36,43.34,8.94,53.39,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.25664031716634,3.62535206481493,4.62975926213562,4.85314673564175
Merged-chr13-60624337-3,chr13,60624166,60624481,+,908.888916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_134062, intron 2 of 26)",RMER19A|LTR|ERVK,22112,NM_134062,69635,Mm.24103,NM_029653,ENSMUSG00000021559,Dapk1,D13Ucla1|DAP-Kinase,death associated protein kinase 1,protein-coding,9.1,19.22,5.72,9.46,3.23,4.04,6.07,0.32,0,0,0,0,0,0,0,0,24.44,30.79,3.91,22.79,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.34333448972845,1.5706139816868,4.20174377403586,3.64085536038968
Merged-chr13-93230701-5,chr13,93230424,93230890,+,908.533325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLT1C|LTR|ERVL-MaLR,-38240,NM_001361537,100715,Mm.242865,NM_133905,ENSMUSG00000042167,Papd4,8030446C20Rik|AI649009|GLD-2|Gld2,PAP associated domain containing 4,protein-coding,33.1,31.08,31.3,23.48,28.47,33.36,22.78,13.86,51.66,45.11,45.46,3.8,67.76,8.83,62.05,7.49,71.33,96.94,20.68,62.5,75.55,3.94,22.47,0,10.96,0,0,21.81,13.71,14.31,0,Equal basal,4.82925684553731,4.34290636155597,5.74818985946369,5.40298628265104
Merged-chr14-75069657-8,chr14,75069323,75069987,+,908.302063,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_030568, intron 2 of 3)","intron (NR_030568, intron 2 of 3)",53628,NM_198642,271221,Mm.320280,NM_198642,ENSMUSG00000034959,Rubcnl,5031414D18Rik|Gm744|Gm911|Kiaa0226l,RUN and cysteine rich domain containing beclin 1 interacting protein like,protein-coding,33.92,28.19,21.54,30.67,31.91,27.8,44.55,23.32,0,0,0,0,0,0,0,0,52.18,117.46,29.06,67.71,114.08,0,0,0,0,0,0,0,0,0,0,Equal basal,4.77418342162172,4.73210664086827,5.66390510435907,5.79478500572163
Merged-chr4-43466109-5,chr4,43465934,43466270,+,908,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-11476,NM_007654,12517,Mm.188157,NM_007654,ENSMUSG00000028459,Cd72,CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2,CD72 antigen,protein-coding,34.34,24.67,44.76,50.3,24.44,19.21,27.84,11.66,31.98,40.6,54.55,41.85,36.3,39.75,53.19,29.97,66.71,84.39,20.12,59.25,89.9,82.8,143.82,49.26,54.82,56.75,100.51,126.52,44.57,46.52,55.74,High basal,5.15038458201427,4.1022534960883,5.60278307568029,5.44729917487756
Merged-chr11-3168654-2,chr11,3168397,3168863,+,907.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 7 of 32)",RLTR21|LTR|ERVK,24833,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,20.68,12.17,19.86,35.4,3.43,0,1.01,3.15,0,0,0,0,0,0,0,0,19.82,15.97,46.95,33.2,30.98,0,0,0,0,0,0,0,0,0,0,High basal,4.33478811263494,1.17627004605398,3.62169813557301,5.07671791568032
Merged-chr14-78701294-4,chr14,78701067,78701420,+,906.674988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081336, intron 2 of 29)","intron (NM_001081336, intron 2 of 29)",31486,NM_001081336,380921,Mm.89591,NM_001081336,ENSMUSG00000034731,Dgkh,5930402B05Rik|D130015C16|DGK,"diacylglycerol kinase, eta",protein-coding,18.2,22.11,17.16,27.78,2.63,5.56,4.05,3.15,22.14,0,4.55,3.8,2.42,8.83,0,0,35.01,31.93,6.15,11.72,29.46,177.43,166.29,94.99,186.4,170.25,112.11,139.61,68.57,121.67,27.87,High basal,4.35031571830039,1.98782357773217,4.4740398791209,3.65421500903704
Merged-chr11-78916595-4,chr11,78916436,78916738,+,906.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4200,NM_010927,18126,Mm.2893,NM_010927,ENSMUSG00000020826,Nos2,MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS,"nitric oxide synthase 2, inducible",protein-coding,15.31,19.22,8.08,19.8,14.34,10.61,10.63,9.45,0,0,0,0,0,0,0,0,43.59,45.62,24.03,52.09,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.87992927933118,3.31928178286208,4.87251536031249,5.12374290502304
Merged-chr4-135890071-3,chr4,135889907,135890210,+,905.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-5131,NM_009924,12802,Mm.297251,NM_009924,ENSMUSG00000062585,Cnr2,CB-2|CB2|CB2-R,cannabinoid receptor 2 (macrophage),protein-coding,5.79,10.89,7.07,11.13,13.73,8.59,14.68,5.36,0,0,0,0,0,0,0,0,19.15,11.4,13.97,28,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.13256102820031,3.14694689035364,3.38478748579141,4.48519080006255
Merged-chr11-3137443-4,chr11,3137238,3137618,+,905.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 22 of 32)","intron (NM_030207, intron 22 of 32)",13407,NR_003517,236604,Mm.247625,NM_001004146,NA,Pisd-ps1,-,"phosphatidylserine decarboxylase, pseudogene 1",pseudo,52.54,40.05,53.18,37.24,14.54,26.28,17.72,9.14,0,0,0,0,0,0,0,0,31.04,53.6,49.75,42.32,61.2,0,0,0,0,0,0,0,0,0,0,High basal,5.42833675463232,3.79820387650312,4.7487594538377,5.53348815380766
Merged-chr2-91696362-4,chr2,91696222,91696562,+,905.18335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355416, intron 1 of 17)",B4A|SINE|B4,14200,NM_145528,51897,Mm.28492,NM_145528,ENSMUSG00000027244,Atg13,1110053A20Rik|D2Ertd391e|Harbi1,autophagy related 13,protein-coding,34.34,25.31,9.76,19.01,15.75,15.67,23.79,10.4,0,0,0,0,0,0,0,0,31.7,77.55,20.68,54.69,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.28686562975734,3.78325694972622,5.02247345237636,5.14500569045183
Merged-chr11-83125091-4,chr11,83124936,83125296,+,904.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,8296,NM_011407,20555,Mm.10948,NM_011407,ENSMUSG00000078763,Slfn1,AV316259,schlafen 1,protein-coding,22.75,22.11,18.85,14.28,11.11,15.16,11.14,6.62,0,0,0,0,0,0,0,0,47.56,63.86,17.89,48.18,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.23035815884611,3.26734582449756,5.16828443548318,5.12004056709052
Merged-chr8-66394380-4,chr8,66394220,66394525,+,903.891663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_175188, intron 5 of 7)","intron (NM_175188, intron 5 of 7)",8071,NM_001166375,72925,Mm.380457,NM_175188,ENSMUSG00000036469,March1,2900024D24Rik|BB085186,membrane-associated ring finger (C3HC4) 1,protein-coding,20.27,19.54,12.12,12.79,16.36,14.66,16.2,10.4,0,0,0,0,0,0,0,0,25.76,41.06,21.24,23.44,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96274735851626,3.64706209800087,4.43523273218289,4.66273333406993
Merged-chr11-47068528-4,chr11,47068241,47068800,+,903.625,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011891, intron 6 of 7)","intron (NM_011891, intron 6 of 7)",257721,NM_178759,276891,Mm.69002,NM_178759,ENSMUSG00000055546,Timd4,B430010N18Rik|TIM-4|Tim4,T cell immunoglobulin and mucin domain containing 4,protein-coding,4.14,3.2,8.75,7.71,7.88,5.56,17.21,7.25,91.02,49.62,68.19,26.63,70.18,220.82,97.51,131.1,8.59,21.67,6.15,26.04,41.55,260.23,220.22,214.61,248.53,212.82,448.45,453.72,212.57,393.62,355.35,Equal basal,2.63554232661633,2.98182282716758,3.27828486396181,4.169228182476
Merged-chr15-59520710-6,chr15,59520540,59520848,+,902.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026746, intron 4 of 6)","intron (NM_026746, intron 4 of 6)",-127960,NM_144549,211770,Mm.40298,NM_144549,ENSMUSG00000032501,Trib1,A530090O15Rik|TRB-1|Trb1,tribbles pseudokinase 1,protein-coding,12.41,14.1,7.4,17.35,15.75,20.22,16.7,4.41,19.68,54.13,0,22.82,4.84,4.42,53.19,0,31.7,33.07,13.41,35.16,43.82,169.55,170.79,80.92,182.75,78.03,123.71,113.43,58.28,78.72,167.22,Equal basal,3.64166049511386,3.49724144514294,4.4293937898486,4.67911026117956
Merged-chr1-84002824-3,chr1,84002665,84003003,+,901.755554,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,216127,NR_105771,102465181,NA,NR_105771,ENSMUSG00000098851,Mir6353,Gm27391|mmu-mir-6353,microRNA 6353,ncRNA,9.1,13.46,19.52,24.8,7.67,8.59,11.64,6.93,0,0,0,0,0,0,0,0,34.35,53.6,15.65,20.18,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96931510384936,2.98244019522169,4.81872332943117,4.24951674846332
Merged-chr10-17767083-5,chr10,17766930,17767236,+,901.234253,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-29136,NM_138628,378431,Mm.283493,NM_138628,ENSMUSG00000039891,Txlnb,2310001N14Rik|Mdp77,taxilin beta,protein-coding,12.41,20.18,21.54,21.38,3.84,7.58,0,3.15,105.78,94.72,72.74,95.1,41.14,53,22.16,22.47,38.97,55.88,8.38,8.46,30.98,354.86,449.44,126.66,336.25,532.04,146.91,165.78,161.14,114.51,69.68,High basal,4.18556451104882,1.71295706113831,4.93561163979992,3.67461392326451
Merged-chr17-79663570-3,chr17,79663442,79663726,+,900.888916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_201361, intron 5 of 10)","intron (NM_201361, intron 5 of 10)",48684,NM_201361,381110,Mm.209801,NM_201361,ENSMUSG00000036368,Rmdn2,AW061290|Fam82a1|RMD-2|mRMD-2,regulator of microtubule dynamics 2,protein-coding,16.13,11.85,11.44,17.7,8.08,3.03,10.63,5.36,0,0,0,0,0,0,0,0,25.76,36.49,8.38,24.09,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.80317078359706,2.58558578696756,4.35404482427387,4.15521374659494
Merged-chr15-58616237-3,chr15,58616046,58616449,+,900.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,200779,NM_145959,210998,Mm.3224,NM_145959,ENSMUSG00000037119,Fam91a1,AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493,"family with sequence similarity 91, member A1",protein-coding,21.51,9.61,5.05,16.3,6.06,7.08,3.54,4.41,0,0,0,0,0,0,0,0,36.33,31.93,7.83,29.3,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.54043880094018,2.35861146985053,4.49976283801608,4.050066366539
Merged-chr14-78699182-4,chr14,78699054,78699384,+,900.737488,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081336, intron 2 of 29)","intron (NM_001081336, intron 2 of 29)",33510,NM_001081336,380921,Mm.89591,NM_001081336,ENSMUSG00000034731,Dgkh,5930402B05Rik|D130015C16|DGK,"diacylglycerol kinase, eta",protein-coding,22.75,31.72,18.17,13.41,2.83,6.57,4.56,0,2.46,31.57,45.46,15.22,0,44.16,26.59,3.75,27.74,30.79,2.79,11.72,12.09,157.72,265.17,80.92,164.47,198.63,112.11,135.24,27.43,118.09,146.32,High basal,4.32268830424191,1.54173479256737,4.28856588431913,2.93505060408104
Merged-chr10-68058174-3,chr10,68057950,68058393,+,898.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Charlie1|DNA|hAT-Charlie,78601,NM_001359319,170799,Mm.209844,NM_133244,ENSMUSG00000037846,Rtkn2,B130039D23Rik|Mbf|Plekhk1,rhotekin 2,protein-coding,14.07,16.66,21.54,16.56,1.62,1.01,4.05,0.32,0,0,0,0,14.52,0,0,0,42.27,47.9,3.91,6.51,37.77,157.72,152.81,112.58,21.93,141.88,7.73,21.81,75.43,7.16,83.61,High basal,4.0785134965745,0.988011580709411,4.88490095808537,3.33445631201442
Merged-chr11-118216159-4,chr11,118215831,118216407,+,898.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011180, intron 1 of 12)",MTD|LTR|ERVL-MaLR,-3377,NM_001112700,19157,Mm.86413,NM_011180,ENSMUSG00000017132,Cyth1,CLM1|CTH-1|CYTIP|Pscd1,cytohesin 1,protein-coding,24.41,40.37,30.96,32.42,22.01,17.69,35.43,16.38,0,0,0,0,0,0,0,0,60.11,109.48,26.27,70.32,82.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.92469427762881,4.24226962045116,5.71347789712927,5.61078677608701
Merged-chr1-156437953-7,chr1,156437798,156438083,+,897.928589,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009230, intron 10 of 15)","intron (NM_009230, intron 10 of 15)",-17025,NM_001346967,77352,Mm.428709,NM_001033180,ENSMUSG00000026601,Axdnd1,9430070O13Rik|Gm979,axonemal dynein light chain domain containing 1,protein-coding,19.03,17.94,18.85,20.85,16.16,4.04,8.61,7.25,88.56,99.23,118.2,152.17,14.52,101.58,26.59,86.15,31.04,38.77,8.38,42.32,34.75,599.33,525.84,372.94,471.48,361.79,494.84,562.79,356.57,511.71,529.54,High basal,4.24013423707491,2.91694733342452,4.52409606577182,4.44632579864144
Merged-chr2-155541231-4,chr2,155540984,155541411,+,897.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_019811, intron 2 of 17)",MIRc|SINE|MIR,15733,NR_040613,74945,Mm.401956,NR_040613,ENSMUSG00000086529,Acss2os,4930471I20Rik,"acyl-CoA synthetase short-chain family member 2, opposite strand",ncRNA,20.27,23.07,25.91,43.29,24.84,8.59,20.75,11.66,0,0,0,0,0,0,0,0,72,69.57,17.89,36.46,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.7002243479788,3.72223966551495,5.52053737544419,4.99583621871831
Merged-chr10-95671301-2,chr10,95671149,95671442,+,897.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-107149,NM_001358996,71207,Mm.24397,NM_027722,ENSMUSG00000020029,Nudt4,4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P,nudix (nucleoside diphosphate linked moiety X)-type motif 4,protein-coding,18.2,11.85,5.72,7.54,8.68,6.57,4.56,6.62,0,0,0,0,0,0,0,0,23.78,13.69,5.03,37.76,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32924266418701,2.59692964777611,3.64621066158318,4.14135062406229
Merged-chr14-71011170-8,chr14,71010983,71011332,+,896.645813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,121050,NM_001302094,14586,Mm.32619,NM_008115,ENSMUSG00000022103,Gfra2,-,glial cell line derived neurotrophic factor family receptor alpha 2,protein-coding,23.17,15.38,12.79,24.1,14.54,16.68,26.83,3.78,66.42,27.06,18.18,64.67,79.85,26.5,88.64,67.42,29.72,57.02,15.65,28.65,46.84,575.67,575.28,235.72,449.55,517.86,626.28,575.88,154.28,347.11,543.47,Equal basal,4.17242965774158,3.51320987213641,4.76198346850647,4.68627342303837
Merged-chr11-49720014-4,chr11,49719868,49720188,+,896.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1F|LTR|ERVL-MaLR,-7306,NM_212484,104625,Mm.247113,NM_212484,ENSMUSG00000020362,Cnot6,CCR4,"CCR4-NOT transcription complex, subunit 6",protein-coding,14.07,9.29,9.42,19.98,18.58,15.16,13.16,3.47,0,0,0,0,0,0,0,0,31.04,26.23,17.33,42.97,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,3.66184397731496,3.29013956239494,4.25727951623772,4.856679558245
Merged-chr2-83705970-3,chr2,83705804,83706100,+,896.222229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER6B|LTR|ERVK,-18445,NM_008402,16410,Mm.227,NM_008402,ENSMUSG00000027087,Itgav,1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik,integrin alpha V,protein-coding,12.41,11.85,22.55,18.93,6.66,9.1,12.15,5.04,0,0,0,0,0,0,0,0,33.03,45.62,19,16.93,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97250632007751,2.8958550999124,4.67930307696455,4.3345149384099
Merged-chr13-6636745-2,chr13,6636624,6636891,+,896,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_019703, intron 1 of 21)","intron (NM_019703, intron 1 of 21)",12014,NM_019703,56421,Mm.273874,NM_019703,ENSMUSG00000021196,Pfkp,1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P,"phosphofructokinase, platelet",protein-coding,4.96,10.57,3.7,13.06,6.26,5.05,6.58,6.3,0,0,0,0,0,0,0,0,21.14,7.98,12.3,20.18,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,2.91272598936844,2.5530155982026,3.23487805204948,4.47321855060055
Merged-chr6-31285467-4,chr6,31285173,31285648,+,895.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_040261, intron 3 of 4)","intron (NR_040261, intron 3 of 4)",65059,NR_040259,73652,Mm.441297,NR_040257,ENSMUSG00000087380,2210408F21Rik,-,RIKEN cDNA 2210408F21 gene,ncRNA,22.34,24.99,24.9,16.82,22.42,15.16,27.84,13.86,0,0,0,0,0,0,0,0,40.95,38.77,22.92,32.55,75.55,0,0,0,0,0,0,0,0,0,0,Equal basal,4.43111593721133,4.06035287380807,4.71642481338582,5.14618650921857
Merged-chr1-165609867-3,chr1,165609463,165610125,+,895.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001083897, intron 1 of 5)",B1_Mm|SINE|Alu,24747,NM_001001880,68481,Mm.46438,NM_001001880,ENSMUSG00000026566,Mpzl1,1110007A10Rik|PZR,myelin protein zero-like 1,protein-coding,13.24,14.74,19.18,15.95,11.91,5.05,10.12,4.1,0,0,0,0,0,0,0,0,40.95,52.46,6.71,33.86,67.99,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96019257612005,2.75867746520628,4.92608370660103,4.55809250439676
Merged-chr8-33968460-4,chr8,33968278,33968685,+,895.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-38618,NM_001042675,19663,Mm.323997,NM_019733,ENSMUSG00000031586,Rbpms,2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes,RNA binding protein gene with multiple splicing,protein-coding,26.48,33,23.22,40.74,15.75,21.73,23.28,18.27,0,0,0,0,0,0,0,0,65.39,65,18.44,48.83,73.28,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85900588060078,4.09769453793574,5.40484525381054,5.2196438652851596
Merged-chr7-75642545-4,chr7,75642323,75642710,+,895.083374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_029332, intron 8 of 36)","intron (NM_029332, intron 8 of 36)",186982,NM_029332,75547,Mm.216107,NM_029332,ENSMUSG00000066406,Akap13,1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC,A kinase (PRKA) anchor protein 13,protein-coding,43.44,28.83,24.23,42.85,18.58,14.15,15.19,4.73,0,27.06,22.73,0,2.42,0,0,0,91.81,118.61,13.41,49.48,79.33,23.66,22.47,17.59,3.65,0,42.53,0,6.86,0,0,High basal,5.0225212718561,3.41123711347846,6.07027306359078,5.11685989020344
Merged-chr11-8561086-3,chr11,8560941,8561233,+,894.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001083587, intron 4 of 30)","intron (NM_001083587, intron 4 of 30)",103448,NM_001083587,319939,Mm.337820,NM_001083587,ENSMUSG00000020422,Tns3,BC023928|F830010I22Rik|TEM6|Tens1,tensin 3,protein-coding,4.14,0,0,1.05,15.15,5.05,12.15,4.73,12.3,0,22.73,0,14.52,26.5,4.43,33.71,2.64,3.42,7.27,83.99,78.57,35.49,26.97,28.15,65.79,42.56,1082.46,1138.66,452.56,1284.65,1693.13,Low basal,0.809700999421836,2.94211446711204,1.5396156094985,5.08711414345191
Merged-chr15-7878167-4,chr15,7877894,7878451,+,893.8125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081402, intron 17 of 17)","intron (NM_001081402, intron 17 of 17)",62622,NM_001301357,14573,Mm.4679,NM_010275,ENSMUSG00000022144,Gdnf,AI385739|ATF,glial cell line derived neurotrophic factor,protein-coding,28.55,16.34,36.68,40.31,17.17,17.18,17.21,6.3,0,0,0,0,0,0,0,0,87.19,94.66,13.97,80.08,120.12,0,0,0,0,0,0,0,0,0,0,Equal basal,4.79395632607604,3.59656092239006,5.87358764137901,5.55881993340071
Merged-chr17-84099868-4,chr17,84099687,84100005,+,893.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,21186,NR_045458,74473,Mm.399575,NR_045458,NA,4933433H22Rik,-,RIKEN cDNA 4933433H22 gene,ncRNA,17.38,19.86,36.01,45.91,12.12,4.55,12.65,15.12,0,0,0,0,0,0,0,0,79.26,76.41,15.09,31.9,53.64,0,0,0,0,0,0,0,0,0,0,High basal,4.74070851144003,3.20713279167217,5.65469032977181,4.78250521174665
Merged-chr9-65575035-6,chr9,65574674,65575292,+,893.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153119, intron 1 of 5)","intron (NM_153119, intron 1 of 5)",5104,NM_153119,102595,Mm.247303,NM_153119,ENSMUSG00000050721,Plekho2,AI840980|Plekhq1,"pleckstrin homology domain containing, family O member 2",protein-coding,7.45,18.58,11.44,11.57,24.23,18.7,10.12,21.11,169.75,81.19,63.65,209.23,162.13,44.16,88.64,235.98,20.48,35.35,15.09,52.74,63.46,303.61,242.7,147.77,186.4,425.64,514.17,331.56,257.14,479.51,348.38,Equal basal,3.5755855991287,3.9618192515697,4.1760468997887,5.09546091837398
Merged-chr1-54586286-6,chr1,54585972,54586563,+,893,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28583,NM_001163314,241062,Mm.103539,NM_175508,ENSMUSG00000073678,Pgap1,5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto,post-GPI attachment to proteins 1,protein-coding,19.86,16.66,14.14,20.33,23.02,12.64,13.67,16.07,0,27.06,0,15.22,0,26.5,0,14.98,48.88,50.18,16.21,44.92,51.37,15.77,0,0,0,0,15.46,0,0,0,0,Equal basal,4.12287965481016,3.79771580225253,5.01890518755502,4.95414351516599
Merged-chr15-101583370-4,chr15,101583188,101583599,+,892.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,5179,NR_002868,432985,Mm.491078,NR_002868,NA,Gm5476,EG432985|Kb17P,type II keratin Kb17P pseudogene,pseudo,28.96,46.13,30.96,30.67,4.04,1.01,0,2.21,49.2,36.09,131.84,64.67,16.94,0,53.19,29.97,42.93,50.18,2.24,8.46,9.07,315.44,265.17,140.73,208.33,418.54,61.86,95.98,54.86,35.78,83.61,High basal,5.01725405402333,1.13220056393292,4.9281029593157,2.59229768819051
Merged-chr11-82974115-4,chr11,82973918,82974470,+,892.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR26B_MM|LTR|ERVK,10871,NR_106144,102466846,NA,NR_106144,ENSMUSG00000098840,Mir7679,Gm27908|mmu-mir-7679,microRNA 7679,ncRNA,20.68,33.96,18.85,21.82,16.16,25.27,22.78,11.66,0,0,0,0,0,0,0,0,52.18,74.13,15.65,42.97,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.50235698361673,3.98921600090233,5.33817083146232,4.981542157073
Merged-chr15-59481977-5,chr15,59481818,59482174,+,892.246643,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026746, intron 4 of 6)","intron (NM_026746, intron 4 of 6)",107798,NM_001164604,68501,Mm.27762,NM_026746,ENSMUSG00000059586,Nsmce2,1110014D18Rik|AI661537,"NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase",protein-coding,33.92,43.89,14.81,13.49,5.25,9.1,5.57,3.47,44.28,27.06,0,0,14.52,8.83,0,0,55.48,100.36,7.27,39.72,34,94.63,211.23,45.74,164.47,170.25,92.78,139.61,24,128.82,55.74,High basal,4.51661197366449,2.43197466920599,5.59538250478516,4.34362053706948
Merged-chr12-25339842-8,chr12,25339549,25340061,+,891.924988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,210631,NR_045844,432641,Mm.112955,NR_045844,NA,Gm17746,-,"predicted gene, 17746",ncRNA,21.1,23.71,22.89,29.97,31.5,15.16,24.8,19.53,49.2,166.89,63.65,53.26,94.37,154.57,13.3,93.64,50.2,72.99,9.5,78.78,89.15,481.04,238.2,253.32,310.67,361.79,317.01,205.05,113.14,200.39,369.28,Equal basal,4.5561415929297,4.25737107181201,5.30006140456014,5.23517893825374
Merged-chr11-97826680-5,chr11,97826502,97826893,+,891.466675,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_010688, intron 4 of 6)","intron (NM_010688, intron 4 of 6)",-14083,NM_001080935,68127,Mm.110270,NM_001080935,ENSMUSG00000050538,B230217C12Rik,AI840637,RIKEN cDNA B230217C12 gene,protein-coding,22.75,31.4,19.18,26.11,26.45,32.35,14.68,12.6,12.3,58.64,0,22.82,41.14,39.75,70.91,63.68,48.22,74.13,19.56,51.43,73.28,90.69,85.39,56.29,40.2,0,69.59,34.9,27.43,32.21,48.77,Equal basal,4.56487306716136,4.12405918872009,5.28272052394075,5.27124408416912
Merged-chr9-90243096-4,chr9,90242887,90243271,+,891.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_194334, intron 2 of 12)","intron (NM_194334, intron 2 of 12)",27690,NM_194334,67016,Mm.335347,NM_194334,ENSMUSG00000037410,Tbc1d2b,1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055,"TBC1 domain family, member 2B",protein-coding,24.82,16.98,31.3,34.44,18.98,7.08,14.68,7.25,0,0,0,0,0,0,0,0,68.03,72.99,22.36,33.86,29.46,0,0,0,0,0,0,0,0,0,0,High basal,4.65151217347034,3.3128351488268,5.51426489247074,4.71390967286924
Merged-chr10-13837147-8,chr10,13836919,13837351,+,891.027771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_025446, intron 1 of 5)","intron (NM_025446, intron 1 of 5)",31822,NM_025446,66253,Mm.45755,NM_025446,ENSMUSG00000019806,Aig1,1500031O19Rik|AV064870|AW413422|CGI-103,androgen-induced 1,protein-coding,29.37,23.07,19.18,23.75,10.7,8.59,13.16,11.34,169.75,257.11,54.55,209.23,133.09,75.08,93.08,93.64,40.29,59.3,13.41,26.69,26.44,323.32,395.5,239.24,409.35,305.04,193.3,418.82,41.14,182.5,222.96,High basal,4.51381581182317,3.29577535412015,5.00041454730402,4.31927164829141
Merged-chr9-60837545-4,chr9,60837341,60837711,+,890.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357408, intron 1 of 19)","intron (NM_001357408, intron 1 of 19)",43084,NM_001357407,72565,Mm.68819,NM_028283,ENSMUSG00000034485,Uaca,2700059D02Rik|nucling,uveal autoantigen with coiled-coil domains and ankyrin repeats,protein-coding,34.34,29.15,24.23,50.82,8.48,8.09,16.2,10.4,0,0,0,0,0,0,0,0,87.19,125.45,12.86,50.78,80.08,0,0,0,0,0,0,0,0,0,0,High basal,5.00016327330668,3.25700596085515,6.07343849405698,5.11410747716241
Merged-chrX-98963915-4,chrX,98963765,98964054,+,890.708374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1MB1|LINE|L1,26128,NM_207633,77929,Mm.212290,NM_207633,ENSMUSG00000047694,Yipf6,A430107J06Rik,"Yip1 domain family, member 6",protein-coding,25.24,11.85,13.46,20.33,17.57,13.14,13.16,8.51,0,0,0,0,0,0,0,0,36.99,37.63,15.65,37.11,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.06076420155932,3.51065781574611,4.62495623942958,4.8133384565488
Merged-chr1-23555981-4,chr1,23555827,23556125,+,890.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-18611,NR_151529,105243890,Mm.383635,NR_151529,NA,Gm28822,-,predicted gene 28822,ncRNA,13.65,15.38,14.81,15.86,15.35,8.59,16.7,7.25,0,0,0,0,0,0,0,0,27.08,44.48,10.62,30.6,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.88846415332491,3.32705001978816,4.52492004940372,4.48432716509202
Merged-chr13-113271372-4,chr13,113271180,113271529,+,889.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,61695,NM_023612,71690,Mm.38929,NM_023612,ENSMUSG00000042379,Esm1,0610042H23Rik|AV004503|ESM-1,endothelial cell-specific molecule 1,protein-coding,9.93,13.78,8.75,13.23,16.56,20.72,9.62,11.34,0,0,0,0,0,0,0,0,33.03,29.65,11.18,50.78,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,3.51325538793926,3.62956344302809,4.38314443137948,4.81364365828626
Merged-chr17-27977251-3,chr17,27977084,27977406,+,889.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001286041, intron 3 of 23)","intron (NM_001286041, intron 3 of 23)",67939,NM_181413,224650,Mm.32556,NM_181413,ENSMUSG00000024219,Anks1,Anks1a|mKIAA0229,ankyrin repeat and SAM domain containing 1,protein-coding,17.38,19.54,30.96,43.11,0,0,2.02,0.63,34.44,0,27.28,22.82,0,0,26.59,0,58.79,84.39,0.56,1.95,11.33,106.46,71.91,21.11,84.06,113.5,7.73,21.81,0,25.05,0,High basal,4.65769163283244,0.501099342368067,5.51351486149613,1.75831986529479
Merged-chr6-29621392-3,chr6,29621212,29621540,+,888,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11527,NM_001347079,320938,Mm.276381,NM_177296,ENSMUSG00000012535,Tnpo3,5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133,transportin 3,protein-coding,10.34,16.66,18.51,17.79,9.09,5.56,9.11,3.15,0,0,0,0,0,0,0,0,23.12,39.92,10.62,29.95,28.71,0,0,0,0,0,0,0,0,0,0,High basal,3.92974871670072,2.58543989337619,4.34190118595737,4.30378522155499
Merged-chr14-56875905-6,chr14,56875611,56876166,+,887.972229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER6C|LTR|ERVK,-10715,NM_177627,76007,Mm.31417,NM_029498,ENSMUSG00000021945,Zmym2,5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198,"zinc finger, MYM-type 2",protein-coding,28.13,33.96,17.84,15.25,27.46,22.24,17.21,28.04,0,0,0,0,0,0,0,0,47.56,91.23,25.15,55.99,76.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.46211178394752,4.34505680373683,5.41961875478133,5.44718151086577
Merged-chr2-162939806-7,chr2,162939572,162940028,+,886.761902,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-3665,NM_001081338,241764,Mm.187086,NM_001081338,ENSMUSG00000035576,L3mbtl1,C630004G01|L3mbtl|mKIAA0681,L3MBTL1 histone methyl-lysine binding protein,protein-coding,33.51,25.63,29.62,37.42,32.11,47.51,24.3,30.25,76.26,63.15,72.74,0,55.66,88.33,31.03,59.93,60.11,100.36,27.95,68.36,115.59,122.23,148.31,35.18,105.99,127.69,108.25,148.33,68.57,118.09,83.61,Equal basal,4.91199458891424,4.80706609132617,5.65177161490953,5.7871534363285
Merged-chr10-19551792-3,chr10,19551620,19551959,+,886.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-40160,NM_010511,15979,Mm.549,NM_010511,ENSMUSG00000020009,Ifngr1,CD119|IFN-gammaR|Ifgr|Ifngr|Nktar,interferon gamma receptor 1,protein-coding,17.38,17.3,13.8,19.01,19.59,15.67,13.16,9.77,0,0,0,0,0,0,0,0,49.54,28.51,16.77,34.51,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.04926759975362,3.64198810305072,4.63926137599019,4.7309084219119
Merged-chr16-17409726-3,chr16,17409523,17409876,+,886.388855,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_023348, intron 1 of 4)","intron (NM_023348, intron 1 of 4)",-3385,NM_001001983,224020,Mm.5718,NM_001001983,ENSMUSG00000041720,Pi4ka,Pik4ca,phosphatidylinositol 4-kinase alpha,protein-coding,13.65,23.71,12.12,15.95,13.33,11.62,10.63,5.36,0,0,0,0,0,0,0,0,33.69,44.48,15.09,19.53,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97175690448096,3.13093063463703,4.67545779109419,4.366606292112
Merged-chr18-62045178-6,chr18,62045017,62045339,+,886.083374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,92103,NM_172628,225608,Mm.262320,NM_172628,ENSMUSG00000045629,Sh3tc2,D430044G18Rik,SH3 domain and tetratricopeptide repeats 2,protein-coding,11.17,16.66,21.2,16.47,9.9,15.67,11.64,9.45,31.98,27.06,54.55,83.69,55.66,48.58,57.62,11.24,33.03,44.48,12.86,34.51,38.53,212.92,130.34,77.4,138.89,0,201.03,165.78,61.71,121.67,202.06,Equal basal,3.97887233771196,3.36027087493697,4.66174141702861,4.59130373599631
Merged-chr13-110753977-3,chr13,110753837,110754109,+,885.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-149526,NR_131193,75139,Mm.490931,NR_131193,ENSMUSG00000114472,Gm38397,-,"predicted gene, 38397",ncRNA,12,11.85,14.81,23.92,0.4,1.01,3.04,0,54.12,54.13,45.46,22.82,0,26.5,26.59,0,30.38,30.79,2.79,3.26,8.31,122.23,152.81,52.77,87.72,205.72,30.93,4.36,0,57.25,0,High basal,3.89014640319066,0.7213380639054,4.35120611453937,2.2746249557657
Merged-chr4-124711127-7,chr4,124710946,124711281,+,885.319031,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B3|SINE|B2,-3748,NM_029157,75062,Mm.25779,NM_029157,ENSMUSG00000028902,Sf3a3,4930512K19Rik|60kDa,"splicing factor 3a, subunit 3",protein-coding,24.82,26.91,15.82,19.54,15.55,15.16,13.67,15.12,68.88,54.13,86.38,45.65,41.14,35.33,0,26.22,39.63,65,13.97,35.16,49.11,276.01,220.22,140.73,208.33,234.1,185.57,148.33,75.43,239.75,278.7,Equal basal,4.37907515625093,3.72100285740426,5.05324974272317,4.75089599710458
Merged-chr6-39275204-5,chr6,39274965,39275448,+,884.599976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,HAL1|LINE|L1,-68433,NM_001033430,338523,Mm.293175,NM_001033430,ENSMUSG00000042599,Kdm7a,A630082K20Rik|BB041802|Jhdm1d|mKIAA1718,lysine (K)-specific demethylase 7A,protein-coding,47.99,17.62,19.86,29.62,24.03,19.71,18.73,13.55,0,0,0,0,0,0,0,0,61.43,79.83,16.77,48.83,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.68260927345618,4.01106615540003,5.50528922410734,5.1350622661513
Merged-chr1-131050200-3,chr1,131050035,131050414,+,884.466675,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,30379,NM_010548,16153,Mm.874,NM_010548,ENSMUSG00000016529,Il10,CSIF|Il-10,interleukin 10,protein-coding,1.65,0.64,0,2.19,12.92,5.56,19.24,5.04,9.84,0,18.18,0,36.3,0,35.46,41.2,2.64,4.56,19.56,46.23,64.22,35.49,0,7.04,18.27,170.25,189.43,257.4,209.14,203.97,487.73,Low basal,0.883490146699653,3.08566876215539,1.68215452266348,5.15906604855765
Merged-chr9-71129131-4,chr9,71128973,71129307,+,884.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_073483, intron 4 of 6)",B3|SINE|B2,33493,NM_001271843,64008,Mm.449427,NM_022026,ENSMUSG00000032204,Aqp9,1700020I22Rik|AI266899|AQP-9,aquaporin 9,protein-coding,12,22.43,8.41,19.89,11.51,21.73,20.25,13.23,0,0,0,0,0,0,0,0,35.67,45.62,14.53,48.18,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.84903904315632,3.83172051961333,4.73266983973476,5.02448060174463
Merged-chr6-136904399-5,chr6,136904038,136904608,+,883.571411,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MER74A|LTR|ERVL,17857,NM_026983,69187,Mm.33692,NM_026983,ENSMUSG00000030219,Erp27,1810033M07Rik|1810047B09Rik,endoplasmic reticulum protein 27,protein-coding,3.31,3.84,2.69,1.49,17.97,9.1,12.15,14.81,41.82,58.64,22.73,22.82,106.47,101.58,128.53,89.9,8.59,2.28,19.56,29.3,46.09,177.43,188.76,140.73,230.26,156.07,514.17,728.57,387.42,447.3,404.12,Low basal,1.81074373100552,3.56274426542641,2.0162065255355,4.79206524266282
Merged-chr8-35709205-3,chr8,35708948,35709485,+,883.5,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,117343,NM_027998,71908,Mm.37817,NM_027998,ENSMUSG00000055976,Cldn23,2310014B08Rik,claudin 23,protein-coding,1.65,0.32,2.36,3.86,18.78,14.15,12.15,11.34,17.22,0,95.47,53.26,99.21,97.16,44.32,44.95,3.3,5.7,31.3,69.66,74.79,63.09,80.9,35.18,43.86,170.25,672.67,584.6,284.57,497.4,571.34,Low basal,1.29319088341768,3.63916940998066,1.91076262217885,5.64313793683021
Merged-chr2-142694656-4,chr2,142694483,142694805,+,881.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355123, intron 23 of 26)","intron (NM_001355123, intron 23 of 26)",206820,NM_001081133,16558,Mm.251934,NM_001081133,ENSMUSG00000038844,Kif16b,8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590,kinesin family member 16B,protein-coding,17.79,25.63,13.13,13.41,10.1,9.6,25.31,8.19,0,0,0,0,0,0,0,0,28.4,59.3,22.92,37.11,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,4.04743117371169,3.43136108154743,4.75812099325709,4.88248395690945
Merged-chr4-32280568-4,chr4,32280427,32280739,+,881.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-136852,NM_001109661,12014,Mm.491223,NM_007521,ENSMUSG00000040270,Bach2,E030004N02Rik,"BTB and CNC homology, basic leucine zipper transcription factor 2",protein-coding,20.68,16.66,21.54,24.01,9.29,12.13,16.7,12.6,7.38,36.09,27.28,3.8,2.42,0,0,0,38.97,61.58,11.74,29.95,39.29,0,13.48,0,25.58,0,30.93,30.54,0,7.16,0,Equal basal,4.33806655197139,3.49032806450353,5.00361467990731,4.49357901519589
Merged-chr19-22930668-3,chr19,22930494,22930894,+,881.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001035239, intron 21 of 24)","intron (NM_001035239, intron 21 of 24)",180089,NR_029591,387200,NA,NR_029591,ENSMUSG00000065507,Mir204,Mirn204|mir-204|mmu-mir-204,microRNA 204,ncRNA,8.27,17.62,11.78,18.31,15.35,6.07,11.14,10.71,0,0,0,0,0,0,0,0,12.55,44.48,21.24,40.37,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,3.73757477023269,3.25861502084209,4.00955505596216,4.95512017457275
Merged-chr14-20825165-5,chr14,20824918,20825611,+,880.533325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-11398,NM_008873,18792,Mm.4183,NM_008873,ENSMUSG00000021822,Plau,u-PA|uPA,"plasminogen activator, urokinase",protein-coding,29.37,28.19,14.14,24.36,34.94,25.27,22.78,17.96,59.04,40.6,54.55,34.24,36.3,53,13.3,86.15,54.82,65,25.15,74.22,68.75,122.23,71.91,7.04,109.65,212.82,108.25,30.54,3.43,71.57,83.61,Equal basal,4.49514556604644,4.40020737141072,5.2805583169499,5.53081922578802
Merged-chr12-21426759-5,chr12,21426521,21426922,+,880.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9285,NM_011739,22630,Mm.289630,NM_011739,ENSMUSG00000076432,Ywhaq,2700028P07Rik|AA409740|AU021156|R74690,tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta,protein-coding,9.52,13.78,11.78,14.37,9.09,8.59,19.24,11.03,66.42,108.26,86.38,26.63,104.05,53,66.48,56.19,16.51,25.09,6.71,25.39,46.84,295.72,256.18,189.99,409.35,454.01,579.89,527.89,411.42,690.63,411.09,Equal basal,3.60333032420958,3.34890399530057,3.79850287186694,4.25104270511291
Merged-chr7-67426292-5,chr7,67426151,67426433,+,879.790466,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-53434,NM_001357324,17258,Mm.132788,NM_001033713,ENSMUSG00000030557,Mef2a,A430079H05Rik,myocyte enhancer factor 2A,protein-coding,15.72,9.29,9.09,18.58,6.26,6.57,10.63,14.81,34.44,40.6,45.46,22.82,53.24,4.42,17.73,52.44,33.03,45.62,10.06,42.32,37.77,283.89,211.23,63.33,80.41,127.69,425.25,327.2,202.28,279.12,334.45,Equal basal,3.65009823773915,3.03552382820744,4.67930307696455,4.56615689273249
Merged-chr13-98027863-4,chr13,98027655,98028207,+,879.674988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_012026, intron 9 of 35)","intron (NM_012026, intron 9 of 35)",178234,NM_012026,110596,Mm.252718,NM_012026,ENSMUSG00000021662,Arhgef28,9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF,Rho guanine nucleotide exchange factor (GEF) 28,protein-coding,17.79,15.7,22.89,16.74,1.82,4.55,0.51,4.1,0,27.06,54.55,0,4.84,26.5,26.59,3.75,42.93,41.06,4.47,16.93,12.09,208.98,274.16,140.73,241.22,248.29,131.44,91.62,113.14,118.09,125.42,High basal,4.14728037900698,1.41071179601845,4.78887546827766,3.2840221085909
Merged-chr12-38761528-3,chr12,38761350,38761729,+,879.666687,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER19B|LTR|ERVK,-18543,NM_001347379,14009,Mm.4866,NM_007960,ENSMUSG00000004151,Etv1,ER81|Etsrp81,ets variant 1,protein-coding,2.48,1.92,0,1.75,7.67,4.04,13.67,6.3,0,9.02,27.28,0,60.5,70.66,128.53,86.15,1.98,0,10.62,40.37,37.02,23.66,76.4,14.07,54.82,0,734.53,724.21,493.71,851.66,557.41,Low basal,1.12845375472919,2.79998589016285,0.641708700575518,4.55908752430573
Merged-chr6-29247989-3,chr6,29247824,29248161,+,879.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RSINE1|SINE|B4,-24496,NM_001190461,69573,Mm.45161,NM_023516,ENSMUSG00000043421,Hilpda,2310016C08Rik|AW049004|Hig2,hypoxia inducible lipid droplet associated,protein-coding,12,10.25,12.12,13.32,6.66,8.59,10.63,10.71,0,0,0,0,0,0,0,0,20.48,34.21,13.41,16.28,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,3.58614804837285,3.04175320528361,4.15355719351416,4.3597472344166
Merged-chr12-35287733-6,chr12,35287588,35287913,+,879.611084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L2|LINE|L2,-92853,NR_030449,751520,NA,NR_030449,ENSMUSG00000076253,Mir680-3,Mirn680-3,microRNA 680-3,ncRNA,19.44,10.57,17.16,19.36,13.73,16.68,18.22,6.93,49.2,27.06,77.29,22.82,26.62,88.33,44.32,0,38.31,52.46,21.24,35.16,30.98,122.23,80.9,42.22,65.79,0,46.39,109.07,30.86,82.3,41.81,Equal basal,3.98870645280491,3.55517635971527,4.87959790593769,4.73046328414652
Merged-chr5-32930942-6,chr5,32930756,32931120,+,879.219482,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001025426, intron 25 of 42)","intron (NM_001025426, intron 25 of 42)",67217,NM_001170567,277854,Mm.101524,NM_177786,ENSMUSG00000037426,Depdc5,AV016528,DEP domain containing 5,protein-coding,21.93,14.1,4.71,16.56,14.94,26.28,11.14,11.66,41.82,81.19,36.37,79.89,45.98,114.83,62.05,67.42,23.78,20.53,20.12,39.06,52.88,102.52,53.93,112.58,142.54,191.54,336.34,200.68,120,135.98,243.87,Equal basal,3.66955948243728,3.74843744052829,3.91020550839574,5.00253533778477
Merged-chr16-57259946-4,chr16,57259781,57260143,+,878.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28496,NM_001358433,67581,Mm.257819,NM_026254,ENSMUSG00000022749,Tbc1d23,4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689,"TBC1 domain family, member 23",protein-coding,11.17,8.97,12.12,14.72,15.75,10.11,11.14,8.51,14.76,13.53,0,26.63,2.42,13.25,0,26.22,22.46,29.65,17.89,29.3,41.55,19.71,26.97,14.07,0,0,19.33,13.09,13.71,0,0,Equal basal,3.55250348734004,3.33863866226569,4.11845203775687,4.70237514190666
Merged-chr7-38071253-6,chr7,38071078,38071411,+,878.633301,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,36246,NM_007633,12447,Mm.16110,NM_007633,ENSMUSG00000002068,Ccne1,AW538188|CycE1,cyclin E1,protein-coding,42.61,19.54,23.22,27.95,6.46,5.56,7.09,5.67,93.48,112.77,100.02,30.43,7.26,48.58,53.19,0,67.37,95.8,6.71,40.37,34,252.35,260.67,168.88,277.77,248.29,115.98,196.32,48,89.46,104.51,High basal,4.70670317633739,2.58476208059527,5.6993842379744,4.31631044020706
Merged-chr10-20879724-7,chr10,20879532,20879925,+,878.432129,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-72819,NM_026203,52906,Mm.253280,NM_026203,ENSMUSG00000019986,Ahi1,1700015F03Rik|Ahi-1|D10Bwg0629e,Abelson helper integration site 1,protein-coding,9.1,4.81,10.1,15.33,18.78,13.65,19.74,25.84,14.76,0,0,45.65,26.62,119.24,137.4,78.66,25.1,33.07,16.21,46.88,99.73,169.55,125.84,87.96,211.98,141.88,278.35,357.74,198.85,297.01,146.32,Equal basal,3.23899231460785,4.04716815550035,4.26876027717704,5.28659004026661
Merged-chrX-35931059-6,chrX,35930668,35931426,+,878.104187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001009947, intron 1 of 52)",MTD|LTR|ERVL-MaLR,42215,NM_001009947,75974,Mm.32873,NM_177745,ENSMUSG00000031093,Dock11,5033414A21Rik|8030476J24|Zizimin2|sph238,dedicator of cytokinesis 11,protein-coding,38.06,31.72,27.26,29.18,50.69,44.98,39.99,19.22,0,0,0,0,0,0,0,0,85.21,90.09,28.51,90.5,114.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.91077512373568,4.94805479097762,5.82231728118043,5.92597440302036
Merged-chr2-62654719-4,chr2,62654574,62654878,+,877.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8471,NM_001164477,71586,Mm.136224,NM_027835,ENSMUSG00000026896,Ifih1,9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2,interferon induced with helicase C domain 1,protein-coding,14.89,10.57,11.11,15.77,11.31,15.16,15.69,9.77,0,0,0,0,0,0,0,0,29.06,47.9,15.09,41.67,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,3.68737104873891,3.51019506011294,4.6249205255045,4.82776165588747
Merged-chr11-85506465-4,chr11,85506302,85506672,+,877.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_138681, intron 15 of 25)",B1_Mur4|SINE|Alu,153323,NM_001166643,192197,Mm.209989,NM_138681,ENSMUSG00000059439,Bcas3,1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira,breast carcinoma amplified sequence 3,protein-coding,16.55,9.29,15.14,17,11.31,4.04,8.1,8.19,0,0,0,0,0,0,0,0,23.12,42.2,6.71,41.67,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.81200760028574,2.85335840037291,4.38030312160415,4.35117600917955
Merged-chr3-149085050-6,chr3,149084908,149085180,+,877.338867,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-130409,NM_001081298,99633,Mm.9776,NM_001081298,ENSMUSG00000028184,Adgrl2,AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786,adhesion G protein-coupled receptor L2,protein-coding,20.68,19.22,35.34,37.85,7.88,6.57,16.2,6.93,59.04,67.66,36.37,34.24,38.72,57.41,62.05,18.73,47.56,87.81,11.18,16.28,37.77,220.8,274.16,70.37,263.15,198.63,108.25,231.22,51.43,186.08,125.42,High basal,4.71431638025982,3.01571545723847,5.39259112702488,4.176958728947
Merged-chr4-133614218-18,chr4,133613413,133614850,+,877.231201,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001017968, intron 3 of 7)","intron (NM_001017968, intron 3 of 7)",-11963,NM_018754,55948,Mm.44482,NM_018754,ENSMUSG00000047281,Sfn,Er|Mme1|Ywhas,stratifin,protein-coding,186.16,166.91,188.47,164.12,44.83,45.99,41.51,31.51,238.63,157.87,304.6,445.08,232.3,145.74,190.58,314.64,335.54,435.65,38.01,157.56,207.76,1399.74,1546.06,928.82,1176.88,1213.06,1086.33,1204.1,651.42,883.87,919.73,High basal,7.37073694273919,5.1091560997624,7.92794384160177,6.6074456335961
Merged-chr4-34388843-4,chr4,34388530,34389145,+,877.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR40|LTR|ERVK,-161778,NM_001007589,433693,Mm.389532,NM_026019,ENSMUSG00000028291,Akirin2,2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2,akirin 2,protein-coding,31.85,28.19,15.14,27.86,14.74,22.74,18.73,11.66,0,0,0,0,0,0,0,0,34.35,35.35,19,33.86,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,4.58609467474549,3.84286667811364,4.53051468933952,4.83763550952158
Merged-chr9-116111762-4,chr9,116111578,116111976,+,876.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029575, intron 3 of 6)",URR1B|DNA|hAT-Charlie,63586,NM_009371,21813,Mm.172346,NM_009371,ENSMUSG00000032440,Tgfbr2,1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII,"transforming growth factor, beta receptor II",protein-coding,73.22,49.34,51.49,47.67,4.44,8.59,6.58,3.15,49.2,13.53,18.18,41.85,31.46,39.75,0,0,71.33,83.25,3.35,18.88,30.22,74.92,197.75,84.44,109.65,127.69,115.98,117.79,54.86,157.45,229.93,High basal,5.69684891472988,2.39925646736641,5.6405635530319,3.62517176296906
Merged-chr15-30427588-4,chr15,30427466,30427724,+,876.599976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355502, intron 2 of 21)","intron (NM_001355502, intron 2 of 21)",255002,NM_008729,18163,Mm.321648,NM_008729,ENSMUSG00000022240,Ctnnd2,Catnd2|Nprap|neurojugin,"catenin (cadherin associated protein), delta 2",protein-coding,7.86,9.93,9.76,12.62,13.13,7.58,12.15,4.73,0,0,0,0,0,0,0,0,27.08,28.51,12.86,24.74,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.3219699867458,2.99517950219919,4.2196795946966,4.29050340023094
Merged-chr12-103437850-4,chr12,103437696,103437984,+,876.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_194067, intron 4 of 5)","intron (NM_194067, intron 4 of 5)",3651,NM_194069,52668,Mm.2121,NM_026790,ENSMUSG00000064215,Ifi27,1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1,"interferon, alpha-inducible protein 27",protein-coding,19.03,18.26,7.4,23.13,8.48,12.13,14.68,8.82,0,0,0,0,0,0,0,0,29.72,30.79,16.77,29.3,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96494802529361,3.29950682872473,4.33604859662615,4.64654108724251
Merged-chr3-65315925-6,chr3,65315756,65316118,+,875.361084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357358, intron 7 of 13)","intron (NM_001357358, intron 7 of 13)",-13252,NR_126080,102637797,Mm.446731,NR_126080,ENSMUSG00000104093,A330015K06Rik,-,RIKEN cDNA A330015K06 gene,ncRNA,33.92,43.57,34.67,33.03,12.92,14.66,17.21,10.08,19.68,81.19,22.73,34.24,19.36,79.49,22.16,33.71,73.32,93.52,11.18,39.72,70.26,114.35,206.74,133.69,124.27,205.72,123.71,218.13,140.57,118.09,202.06,High basal,5.1134346008963,3.5933395291445,5.74214463938733,4.87417607029679
Merged-chr18-39582089-3,chr18,39581954,39582229,+,875.361084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-94846,NM_008173,14815,Mm.129481,NM_008173,ENSMUSG00000024431,Nr3c1,GR|Grl-1|Grl1,"nuclear receptor subfamily 3, group C, member 1",protein-coding,7.86,14.1,10.1,9.2,5.05,9.6,16.7,5.67,0,0,0,0,0,0,0,0,12.55,27.37,10.06,27.34,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.36320298280731,2.94186852077311,3.67664916973759,4.33546579075797
Merged-chr6-53462154-4,chr6,53461913,53462382,+,875.166626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001327821, intron 5 of 10)","intron (NM_001327821, intron 5 of 10)",-111227,NM_172728,231991,Mm.227444,NM_172728,ENSMUSG00000053007,Creb5,9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik,cAMP responsive element binding protein 5,protein-coding,24.82,23.39,26.92,48.19,18.38,20.72,29.36,10.71,0,0,0,0,0,0,0,0,40.29,66.15,24.59,42.97,90.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.83255584608491,4.02747616558468,5.07698516650756,5.39423209469359
Merged-chr17-42837332-4,chr17,42837168,42837506,+,874.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009847, intron 4 of 17)","intron (NM_009847, intron 4 of 17)",39087,NM_009847,12488,Mm.218637,NM_009847,ENSMUSG00000061665,Cd2ap,AL024079|C78928|METS-1|Mets1,CD2-associated protein,protein-coding,12,4.16,11.11,14.98,13.13,9.6,12.65,7.56,4.92,0,0,0,9.68,0,0,22.47,25.76,33.07,17.33,29.95,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,3.2874976617602,3.24151411151693,4.28653193103187,4.67178363919041
Merged-chr5-23121456-6,chr5,23121308,23121666,+,873.785706,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029990, intron 2 of 2)",Charlie5|DNA|hAT-Charlie,312866,NR_040469,269630,Mm.425231,NR_040469,ENSMUSG00000073147,5031425E22Rik,-,RIKEN cDNA 5031425E22 gene,ncRNA,19.03,10.57,22.21,29.97,7.67,1.01,3.04,2.52,105.78,342.81,127.29,64.67,87.11,79.49,84.21,67.42,19.82,22.81,8.38,11.72,11.33,370.64,400,144.25,233.91,425.64,278.35,183.23,54.86,139.56,125.42,High basal,4.23652567235458,1.79675549718488,3.85673449104242,3.36486328713671
Merged-chr10-17771858-1,chr10,17771727,17771989,+,873.666687,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-24361,NM_138628,378431,Mm.283493,NM_138628,ENSMUSG00000039891,Txlnb,2310001N14Rik|Mdp77,taxilin beta,protein-coding,0,0,0,0,4.64,7.58,5.06,1.58,2.46,0,0,0,0,0,26.59,0,0,0,12.3,34.51,32.49,0,0,10.55,0,0,65.72,52.35,48,0,34.84,Low basal,0,2.0803450795567,0,4.49225937786875
Merged-chr11-119428942-7,chr11,119428676,119429136,+,873.590454,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,C-rich|Low_complexity|Low_complexity,38434,NR_035453,100316690,NA,NR_035453,ENSMUSG00000088015,Mir1932,mir-1932|mmu-mir-1932,microRNA 1932,ncRNA,47.99,46.45,16.83,31.89,13.53,7.58,13.16,7.25,91.02,18.04,122.75,95.1,60.5,26.5,70.91,86.15,43.59,94.66,16.21,44.27,61.95,145.89,125.84,52.77,95.03,163.16,154.64,122.16,96,200.39,195.09,High basal,4.996857585724,3.17084239543108,5.38475379385987,5.03510443718318
Merged-chr11-121697777-3,chr11,121697618,121697962,+,873.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4637,NM_144797,210029,Mm.153566,NM_144797,ENSMUSG00000039208,Metrnl,9430048M07Rik|BC019776,"meteorin, glial cell differentiation regulator-like",protein-coding,7.45,30.76,12.79,19.36,7.27,9.1,7.59,7.25,0,0,0,0,0,0,0,0,36.33,31.93,10.06,22.14,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95803793734104,2.8633098599519,4.49976283801608,4.23906343033774
Merged-chr13-108013284-4,chr13,108013139,108013473,+,872.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-31168,NM_001048250,75616,Mm.491164,NM_001048250,ENSMUSG00000071180,Smim15,2810008M24Rik,small integral membrane protein 15,protein-coding,17.38,18.26,12.45,14.02,11.11,10.11,15.19,3.78,0,0,0,0,0,0,0,0,39.63,29.65,12.3,27.34,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.92453912843369,3.0797180730502,4.50981759050437,4.51552519099592
Merged-chr3-87322749-5,chr3,87322347,87322938,+,872.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR12B|LTR|ERVK,-35239,NM_009690,11801,Mm.6676,NM_009690,ENSMUSG00000015854,Cd5l,1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM,CD5 antigen-like,protein-coding,5.79,9.61,2.02,4.03,17.77,11.62,17.21,9.45,22.14,4.51,27.28,30.43,104.05,39.75,66.48,235.98,6.61,7.98,21.24,30.6,51.37,185.32,107.86,66.85,69.44,85.13,297.68,431.91,401.14,279.12,341.41,Equal basal,2.43724281991922,3.59846501789036,2.48718144860919,4.90101571357151
Merged-chr7-113172622-3,chr7,113172484,113172764,+,872.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-30609,NR_045978,75239,Mm.381688,NR_045978,ENSMUSG00000110009,4930543E12Rik,4930545H14Rik,RIKEN cDNA 4930543E12 gene,ncRNA,9.1,10.57,8.75,13.84,4.44,4.55,10.63,5.36,0,0,0,0,0,0,0,0,23.12,28.51,8.38,23.44,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,3.41336659699956,2.48590459370919,4.11152314323477,4.00763594029624
Merged-chr2-83625837-4,chr2,83625662,83626018,+,872.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-18738,NM_026934,69082,Mm.27804,NM_026934,ENSMUSG00000027091,Zc3h15,1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4,zinc finger CCCH-type containing 15,protein-coding,15.72,18.58,13.46,18.31,12.12,10.11,15.69,9.45,0,0,0,0,0,0,0,0,33.69,38.77,14.53,24.09,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,4.02676659946898,3.39939332640983,4.58059952379292,4.37005126426298
Merged-chr13-34684015-3,chr13,34683834,34684203,+,870.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,(A)n|Simple_repeat|Simple_repeat,31095,NR_105041,101056149,Mm.421309,NR_105041,ENSMUSG00000086786,Gm15908,-,predicted gene 15908,ncRNA,10.34,4.81,15.82,20.07,10.3,6.57,7.59,7.56,0,0,0,0,0,0,0,0,21.14,36.49,11.74,29.3,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.50212711354934,2.8682418445369,4.21933206620441,4.43665779597471
Merged-chr1-78702567-6,chr1,78702382,78702725,+,870.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033606, intron 12 of 14)","intron (NM_001033606, intron 12 of 14)",44113,NM_001136226,195434,Mm.276016,NM_001001981,ENSMUSG00000079470,Utp14b,4932411L21Rik|jsd,UTP14B small subunit processome component,protein-coding,60.81,40.05,50.48,55.64,7.27,5.56,22.78,5.67,86.1,139.83,118.2,60.87,45.98,0,26.59,44.95,98.42,133.43,13.41,22.79,17.38,370.64,233.71,140.73,358.18,411.45,154.64,117.79,65.14,82.3,104.51,High basal,5.60385712433204,2.98857572506648,6.2034328544111,4.05799655454608
Merged-chr4-136506042-5,chr4,136505872,136506233,+,869.599976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_024452, intron 1 of 4)","intron (NM_024452, intron 1 of 4)",36291,NM_024452,269593,Mm.485824,NM_024452,ENSMUSG00000001089,Luzp1,2700072H04Rik|AI266952|Luzp|mFLJ00226,leucine zipper protein 1,protein-coding,25.24,26.27,16.83,25.67,16.76,12.64,16.7,14.49,9.84,54.13,68.19,22.82,36.3,4.42,13.3,0,29.72,37.63,15.65,39.06,46.84,63.09,67.42,45.74,69.44,163.16,96.65,95.98,61.71,42.94,90.58,Equal basal,4.4935464707225,3.72602025378385,4.47352700282684,4.82970727088349
Merged-chr6-114782183-4,chr6,114782044,114782312,+,868.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001253718, intron 19 of 19)","intron (NM_001253718, intron 19 of 19)",139081,NM_001253718,74244,Mm.275332,NM_028835,ENSMUSG00000030314,Atg7,1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553,autophagy related 7,protein-coding,11.58,22.75,9.76,13.14,8.48,7.08,6.07,9.45,0,0,0,0,0,0,0,0,24.44,33.07,16.77,27.34,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,3.7603199710526,2.88723927900845,4.25053970446592,4.20335705514472
Merged-chr13-19855039-9,chr13,19854735,19855276,+,868.586426,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-30748,NM_181754,353346,Mm.239268,NM_181754,ENSMUSG00000053101,Gpr141,PGR13,G protein-coupled receptor 141,protein-coding,70.74,41.33,35,39.69,41.8,36.9,48.09,26.78,86.1,31.57,72.74,106.52,101.63,26.5,66.48,82.41,77.94,128.87,38.57,80.73,113.32,82.8,143.82,109.07,124.27,42.56,154.64,148.33,78.86,150.29,118.45,Equal basal,5.42046094081225,4.99154155788266,6.01303570315185,6.00786311459381
Merged-chr15-25358779-4,chr15,25358632,25358926,+,868.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,54985,NM_027395,70350,Mm.29586,NM_027395,ENSMUSG00000045763,Basp1,2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22,"brain abundant, membrane attached signal protein 1",protein-coding,9.93,6.09,7.74,14.63,29.48,14.15,22.78,9.14,0,0,0,0,0,0,0,0,29.72,17.11,21.24,58.6,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,3.22428808174922,3.91436365102978,3.94321579067495,5.43430510630965
Merged-chr14-50060670-3,chr14,50060509,50060851,+,867.116638,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MERVL_2A-int|LTR|ERVL,23999,NM_146316,258313,Mm.463727,NM_146316,ENSMUSG00000060523,Olfr726,MOR246-4,olfactory receptor 726,protein-coding,0,0,0,0.53,12.12,12.64,16.2,8.82,0,0,0,22.82,14.52,26.5,31.03,11.24,0,0,19,62.5,48.35,0,26.97,7.04,80.41,0,231.96,213.77,85.71,203.97,181.16,Low basal,0.146949029296737,3.45735967725057,0,5.1541855849473
Merged-chr7-104401380-8,chr7,104401119,104401875,+,866.817688,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-42851,NM_175648,244183,Mm.347647,NM_175648,ENSMUSG00000052749,Trim30b,A530023O14Rik|Trim30-1,tripartite motif-containing 30B,protein-coding,55.85,82.97,46.44,50.03,45.24,38.41,70.36,31.19,36.9,94.72,95.47,45.65,58.08,101.58,35.46,93.64,93.13,152.82,22.92,112.64,150.34,264.18,274.16,211.1,248.53,340.51,162.37,327.2,168,218.28,341.41,Equal basal,5.76526182846644,5.22865738888886,6.26083468222965,6.05592146644046
Merged-chr4-86686717-5,chr4,86686582,86686879,+,866.72998,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-16671,NM_007408,11520,Mm.381,NM_007408,ENSMUSG00000028494,Plin2,AA407157|ADPH|Adfp|Adrp,perilipin 2,protein-coding,19.44,10.89,12.12,17.17,8.08,13.14,5.06,7.25,14.76,0,27.28,0,4.84,13.25,26.59,22.47,39.63,44.48,12.86,32.55,52.13,70.97,98.88,59.81,98.68,113.5,100.51,130.88,102.86,164.61,83.61,Equal basal,3.85802289639661,2.91779221995979,4.78841457615349,4.70516134928003
Merged-chr4-59368348-6,chr4,59368163,59368495,+,866.722229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001163288, intron 9 of 16)","intron (NM_001163288, intron 9 of 16)",70304,NM_001163288,634731,Mm.483589,NM_001163288,ENSMUSG00000038578,Susd1,A530080P10|Gm12528,sushi domain containing 1,protein-coding,24.41,19.86,29.95,32.68,18.98,21.23,12.15,12.92,54.12,27.06,104.56,30.43,19.36,26.5,31.03,48.69,44.91,60.44,18.44,45.57,46.09,102.52,76.4,35.18,109.65,92.22,150.77,126.52,30.86,128.82,83.61,Equal basal,4.66557695134217,3.81839083129943,5.08965069774911,4.96977277937661
Merged-chr19-55585419-4,chr19,55585270,55585575,+,866.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001360431, intron 8 of 8)","intron (NM_001360431, intron 8 of 8)",116782,NR_045318,77594,Mm.329924,NR_045318,ENSMUSG00000097632,4930552P12Rik,-,RIKEN cDNA 4930552P12 gene,ncRNA,8.27,13.13,15.82,17.96,12.52,8.59,15.69,2.52,0,0,0,0,0,0,0,0,31.7,45.62,11.74,29.3,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.73225648345323,2.94090527978171,4.6510621777304,4.43665779597471
Merged-chr14-21280677-7,chr14,21280498,21280838,+,865.741272,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_134079, intron 6 of 10)","intron (NM_134079, intron 6 of 10)",204516,NM_001243041,11534,Mm.188734,NM_134079,ENSMUSG00000039197,Adk,2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak,adenosine kinase,protein-coding,22.34,23.71,24.23,40.92,17.17,9.6,31.38,7.88,66.42,76.68,113.65,98.91,36.3,30.91,39.89,26.22,75.3,87.81,9.5,50.78,41.55,212.92,247.19,102.03,233.91,170.25,235.82,139.61,96,132.4,125.42,High basal,4.71066922015449,3.64928652452372,5.71653115283975,4.67001553859344
Merged-chr14-25857362-6,chr14,25857069,25857640,+,865.544434,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_013469, intron 1 of 14)","intron (NM_013469, intron 1 of 14)",15199,NM_013469,11744,Mm.294083,NM_013469,ENSMUSG00000021866,Anxa11,A830099O17Rik|Anx11,annexin A11,protein-coding,22.75,15.7,6.06,16.56,27.87,17.69,19.74,7.25,14.76,58.64,0,72.28,14.52,105.99,44.32,22.47,33.69,47.9,20.68,40.37,80.08,51.26,26.97,59.81,32.89,0,247.42,191.96,222.85,178.92,355.35,Equal basal,3.78838119810965,3.83271388586554,4.72690992986739,5.22570051918412
Merged-chr19-11513657-6,chr19,11513449,11513848,+,865.177795,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4911,NM_027209,69774,Mm.436639,NM_027209,ENSMUSG00000024677,Ms4a6b,1810027D10Rik,"membrane-spanning 4-domains, subfamily A, member 6B",protein-coding,23.99,24.99,17.16,21.82,33.93,18.7,33.41,17.96,27.06,13.53,0,11.41,4.84,61.83,0,0,36.99,75.27,22.92,70.32,73.28,63.09,98.88,56.29,109.65,205.72,108.25,109.07,102.86,189.66,83.61,Equal basal,4.40819797762916,4.4186039553715,5.10831439117449,5.49192388752291
Merged-chr1-135267771-4,chr1,135267583,135267939,+,864.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001159624, intron 5 of 9)","intron (NM_001159624, intron 5 of 9)",-9289,NM_007921,13710,Mm.441439,NM_007921,ENSMUSG00000003051,Elf3,ESE-1|ESX|jen,E74-like factor 3,protein-coding,18.2,21.78,22.55,18.49,11.51,15.67,18.73,9.77,0,0,0,0,0,0,0,0,44.25,57.02,12.3,37.76,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30487010344322,3.57061249204396,5.03850262214517,4.51216673803499
Merged-chr1-161463924-7,chr1,161463749,161464082,+,864.58728,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-30742,NM_183391,240873,Mm.276823,NM_183391,ENSMUSG00000066755,Tnfsf18,Gitrl|Tnlg2a,"tumor necrosis factor (ligand) superfamily, member 18",protein-coding,22.34,17.3,24.23,21.64,14.74,10.11,8.1,5.99,147.6,297.7,68.19,136.95,72.6,92.74,62.05,48.69,21.8,36.49,11.18,24.09,23.42,264.18,238.2,154.8,248.53,340.51,119.84,152.69,78.86,114.51,160.26,High basal,4.38078386596035,3.09578862262444,4.24018663501917,4.13442354231859
Merged-chr8-94485481-3,chr8,94485346,94485610,+,864.388916,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033207, intron 11 of 48)",B3A|SINE|B2,12715,NM_001033207,434341,Mm.334720,NM_001033207,ENSMUSG00000074151,Nlrc5,AI451557|AK220210|NOD27,"NLR family, CARD domain containing 5",protein-coding,8.69,2.88,2.69,6.13,5.05,7.08,8.1,9.14,39.36,81.19,40.92,19.02,38.72,44.16,0,56.19,10.57,18.25,7.83,22.14,34,110.4,112.36,119.62,168.13,85.13,251.29,235.59,109.71,304.16,153.29,Equal basal,2.36366711929368,2.7828566621954,3.2953992011268,4.10725666060816
Merged-chr4-150060184-6,chr4,150059892,150060542,+,863.611084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-8237,NR_029751,723848,NA,NR_029751,ENSMUSG00000065493,Mir34a,Mirn34a|mir-34a|mmu-mir-34a,microRNA 34a,ncRNA,20.68,48.38,40.05,37.06,6.66,3.54,5.57,8.19,29.52,63.15,63.65,110.32,21.78,0,8.86,56.19,89.83,127.73,8.38,31.25,56.66,268.12,202.25,38.7,164.47,134.78,88.92,222.5,30.86,214.7,0,High basal,5.06838573398983,2.46353023746388,6.10745731103728,4.53328673082094
Merged-chr2-131166015-6,chr2,131165662,131166351,+,863.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLT2B4|LTR|ERVL,-5925,NM_026091,67326,Mm.27711,NM_026091,ENSMUSG00000027327,1700037H04Rik,-,RIKEN cDNA 1700037H04 gene,protein-coding,7.45,8.97,11.44,15.07,20.19,10.11,25.31,24.58,36.9,18.04,63.65,110.32,38.72,48.58,101.94,104.88,22.46,17.11,22.36,69.66,106.52,141.95,130.34,80.92,197.37,49.66,618.55,549.7,305.14,504.56,647.99,Equal basal,3.4235116340092002,4.06508474428409,3.75131355907887,5.65299570233073
Merged-chr5-117147491-4,chr5,117147267,117147825,+,861.489563,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081308, intron 1 of 19)","intron (NM_001081308, intron 1 of 19)",13958,NM_183306,330177,Mm.24343,NM_183306,ENSMUSG00000061288,Taok3,2900006A08Rik|A130052D22|A430105I05Rik,TAO kinase 3,protein-coding,31.03,25.63,15.48,31.02,4.44,1.01,1.01,5.04,41.82,18.04,63.65,30.43,14.52,70.66,8.86,0,54.82,57.02,4.47,13.02,22.66,141.95,188.76,109.07,124.27,127.69,162.37,109.07,48,64.41,41.81,High basal,4.59629140594776,1.61896101057323,5.18875536388463,3.44595711378331
Merged-chr14-74868802-2,chr14,74868652,74868932,+,861.041626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001033439, intron 1 of 19)","intron (NM_001033439, intron 1 of 19)",79085,NM_001252132,380916,Mm.288868,NM_001033439,ENSMUSG00000068015,Lrch1,4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016,leucine-rich repeats and calponin homology (CH) domain containing 1,protein-coding,9.93,7.37,8.41,14.55,8.28,1.52,5.06,3.78,0,0,0,0,0,0,0,0,29.06,14.83,19,33.2,26.44,0,0,0,0,0,0,0,0,0,0,Equal basal,3.31336862619026,2.05912413521512,3.83498933807258,4.57994689878293
Merged-chr11-50154378-4,chr11,50154206,50154534,+,860.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_029745, intron 10 of 20)",L1MB3|LINE|L1,-20481,NM_026543,68067,Mm.40828,NM_026543,ENSMUSG00000020381,Mrnip,2900016G09Rik|3010026O09Rik|AI851514|AW475975,MRN complex interacting protein,protein-coding,26.48,31.08,26.25,34.26,8.28,16.68,9.62,6.62,0,0,0,0,0,0,0,0,73.32,61.58,12.86,18.88,28.71,0,0,0,0,0,0,0,0,0,0,High basal,4.82457986460254,3.13078097483672,5.44783633716744,4.18027189719167
Merged-chr8-80969652-4,chr8,80969478,80969900,+,859.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1MC5|LINE|L1,45217,NM_027554,74841,Mm.246018,NM_027554,ENSMUSG00000038250,Usp38,4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891,ubiquitin specific peptidase 38,protein-coding,28.13,21.78,18.85,27.51,11.11,9.6,27.33,8.51,0,0,0,0,0,0,0,0,37.65,75.27,14.53,41.02,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.53646498817321,3.48234410432424,5.12062609049708,4.8184090692769
Merged-chr7-97029427-7,chr7,97029170,97029834,+,859.619019,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153591, intron 7 of 13)",RSINE1|SINE|B4,-52249,NM_001162477,14389,Mm.42033,NM_010248,ENSMUSG00000004508,Gab2,AI463667|D130058I17Rik|p97,growth factor receptor bound protein 2-associated protein 2,protein-coding,47.58,34.92,51.49,39.17,31.1,44.98,46.06,15.75,27.06,0,27.28,53.26,29.04,26.5,26.59,63.68,80.58,140.27,39.13,87.24,95.19,70.97,89.89,52.77,76.75,120.6,34.79,104.7,96,93.04,76.64,Equal basal,5.34877554126569,4.76636135656879,6.0970308180894,5.96867788485333
Merged-chr11-3178001-3,chr11,3177756,3178226,+,858.055542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030207, intron 5 of 32)","intron (NM_030207, intron 5 of 32)",15472,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,41.37,22.11,47.79,44.6,0.2,1.01,0,0,0,0,0,0,0,0,0,0,21.14,42.2,67.07,34.51,65.73,0,0,0,0,0,0,0,0,0,0,High basal,5.16440202055438,0.219598748392113,4.31946542457053,5.6141771689881
Merged-chr11-117881997-4,chr11,117881829,117882224,+,857.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8500,NM_027919,71776,Mm.3200,NM_027919,ENSMUSG00000017713,Tha1,1300017K07Rik|GLY1,threonine aldolase 1,protein-coding,19.44,16.02,21.2,29.53,21.41,15.16,15.19,12.92,0,0,0,0,0,0,0,0,51.52,78.69,13.41,39.06,57.42,0,0,0,0,0,0,0,0,0,0,Equal basal,4.35622224662836,3.81802492325606,5.37130711108403,4.85435560046556
Merged-chr2-113449518-6,chr2,113449309,113449758,+,856.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001285459, intron 2 of 16)","intron (NM_001285459, intron 2 of 16)",8469,NM_001285459,14260,Mm.4938,NM_010230,ENSMUSG00000044042,Fmn1,Fmn|formin-1|ld,formin 1,protein-coding,37.23,29.15,42.74,52.14,37.36,34.87,59.22,27.41,63.96,18.04,40.92,22.82,72.6,70.66,53.19,0,77.94,130.01,43.04,91.15,111.06,51.26,13.48,42.22,47.51,49.66,27.06,13.09,17.14,42.94,6.97,Equal basal,5.23703504558604,5.01417682019912,6.01930412381461,6.10757609921391
Merged-chr8-104436237-4,chr8,104436105,104436369,+,855.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001013380, intron 4 of 12)","intron (NM_001013380, intron 4 of 12)",6810,NM_001013380,234663,Mm.289583,NM_001013380,ENSMUSG00000035770,Dync1li2,AA409702|C920003I06|Dncli2|Dnclic2|LIC2,"dynein, cytoplasmic 1 light intermediate chain 2",protein-coding,18.2,22.75,16.49,20.07,11.11,10.61,13.16,5.99,0,0,0,0,0,0,0,0,24.44,51.32,15.09,17.58,34,0,0,0,0,0,0,0,0,0,0,High basal,4.23364113247869,3.15493422984348,4.55412381844098,4.2992536199487
Merged-chr7-110787497-3,chr7,110787345,110787654,+,855.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009667, intron 2 of 14)","intron (NM_009667, intron 2 of 14)",14895,NM_009667,11717,Mm.3238,NM_009667,ENSMUSG00000005686,Ampd3,-,adenosine monophosphate deaminase 3,protein-coding,20.68,16.34,14.47,17.52,5.65,7.08,2.02,4.1,0,0,0,0,0,0,0,0,35.67,62.72,4.47,17.58,24.93,0,0,0,0,0,0,0,0,0,0,High basal,4.07291156346333,2.20108095389798,4.95488410273641,3.62179733332204
Merged-chr12-74804284-2,chr12,74804156,74804397,+,855.666626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,GSAT_MM|Satellite|Satellite,373056,NM_172805,238271,Mm.44465,NM_172805,ENSMUSG00000034402,Kcnh5,Eag2,"potassium voltage-gated channel, subfamily H (eag-related), member 5",protein-coding,11.58,3.52,9.09,21.12,3.03,2.53,4.05,4.1,0,0,0,0,0,0,0,0,10.57,29.65,35.77,20.83,18.13,0,0,0,0,0,0,0,0,0,0,Equal basal,3.28743395676576,1.83795288408299,3.62028512318032,4.49235984691573
Merged-chr17-71256965-5,chr17,71256796,71257111,+,855.266663,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357338, intron 4 of 7)","intron (NM_001357338, intron 4 of 7)",52299,NM_001164885,64898,Mm.227924,NM_022882,ENSMUSG00000024052,Lpin2,2610511G02Rik|AI481352|AW742896,lipin 2,protein-coding,47.58,56.06,28.94,42.67,4.44,2.02,2.53,2.21,83.64,144.34,145.48,106.52,24.2,4.42,4.43,33.71,71.33,94.66,5.03,14.97,18.89,291.78,346.07,197.02,336.25,276.66,173.97,157.06,82.28,82.3,216,High basal,5.3461606300808,1.60650269383626,5.73133068022709,3.47452097200275
Merged-chr2-132203979-3,chr2,132203812,132204132,+,855,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTE-int|LTR|ERVL-MaLR,43816,NM_027478,70612,Mm.30116,NM_027478,ENSMUSG00000027341,Tmem230,5730494N06Rik|AA407821,transmembrane protein 230,protein-coding,10.76,9.61,6.06,12.71,3.63,1.52,9.11,4.73,0,0,0,0,0,0,0,0,23.78,36.49,6.71,22.79,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,3.29857363726805,2.04704559559365,4.29935983736486,3.70840903305128
Merged-chr8-26953161-1,chr8,26953052,26953271,+,854.666687,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLT1F|LTR|ERVL-MaLR,-24175,NM_001101502,353310,Mm.212469,NM_001101502,ENSMUSG00000085795,Zfp703,1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1,zinc finger protein 703,protein-coding,0,0,0,0,2.42,2.02,6.07,2.21,0,0,0,0,0,0,0,0,0,0,10.62,35.16,35.51,0,0,0,0,0,0,0,0,0,0,Low basal,0,1.72788390889959,0,4.47564444999935
Merged-chrX-159911799-4,chrX,159911596,159911938,+,852.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001135728, intron 4 of 12)","intron (NM_001135728, intron 4 of 12)",-30926,NM_001290661,58194,Mm.286495,NM_021389,ENSMUSG00000040990,Sh3kbp1,1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta,SH3-domain kinase binding protein 1,protein-coding,19.44,15.06,9.76,27.51,8.08,13.65,32.4,7.88,0,0,0,0,0,0,0,0,39.63,59.3,29.62,40.37,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.03680364054375,3.53926088278123,4.98888967529676,5.10252089192442
Merged-chr7-34266130-5,chr7,34265906,34266407,+,852.06665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172741, intron 1 of 12)","intron (NM_172741, intron 1 of 12)",19453,NM_172741,233103,Mm.491097,NM_172741,ENSMUSG00000066571,4931406P16Rik,AA553327|mKIAA0355,RIKEN cDNA 4931406P16 gene,protein-coding,7.45,8.01,9.76,12.79,16.16,24.77,36.95,11.66,22.14,45.11,9.09,0,19.36,70.66,66.48,11.24,15.85,27.37,19.56,63.8,88.39,173.49,229.21,94.99,157.16,99.31,293.81,388.28,150.85,325.64,299.61,Equal basal,3.25571492169137,4.14401531369398,3.83010607976337,5.46109152989501
Merged-chr18-69290107-5,chr18,69289985,69290253,+,851.320007,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,ORR1C2|LTR|ERVL-MaLR,-54373,NM_013685,21413,Mm.4269,NM_013685,ENSMUSG00000053477,Tcf4,5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19,transcription factor 4,protein-coding,33.51,36.84,25.91,32.33,3.63,2.02,6.07,3.78,59.04,198.47,90.92,79.89,2.42,8.83,26.59,44.95,49.54,71.85,4.47,13.02,14.35,319.38,328.09,225.17,314.32,312.13,146.91,74.17,37.71,60.83,76.64,High basal,4.93269054668682,2.01512578376107,5.27967986818503,3.24270596276804
Merged-chr15-60779868-4,chr15,60779719,60780039,+,851.150024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-43086,NR_030696,320469,Mm.230853,NM_177166,NA,9930014A18Rik,-,RIKEN cDNA 9930014A18 gene,ncRNA,27.72,18.26,15.48,28.83,10.1,9.6,12.15,9.77,0,0,0,0,0,0,0,0,27.74,41.06,11.74,24.09,37.02,0,0,0,0,0,0,0,0,0,0,High basal,4.4080030038384,3.23419528959339,4.48606261590021,4.36628739860197
Merged-chr14-45676868-8,chr14,45676694,45677158,+,850.870117,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLT1A0|LTR|ERVL-MaLR,-18783,NM_001042719,114874,Mm.121918,NM_176845,ENSMUSG00000037697,Ddhd1,Mir5131|PA-PLA1,DDHD domain containing 1,protein-coding,9.93,14.1,26.92,17.79,12.52,9.1,16.7,8.51,73.8,94.72,254.59,129.34,101.63,150.16,115.24,146.08,15.85,25.09,9.5,25.39,37.02,256.29,220.22,221.65,233.91,148.97,286.08,362.1,154.28,297.01,153.29,Equal basal,4.00958210561945,3.35088083027929,3.77137301788673,4.2952168658128
Merged-chr17-45678652-3,chr17,45678480,45678907,+,850.444458,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_198167, intron 4 of 23)","intron (NM_198167, intron 4 of 23)",7525,NM_198167,224807,Mm.157904,NM_198167,ENSMUSG00000036026,Tmem63b,BC026370,transmembrane protein 63b,protein-coding,9.52,3.84,2.36,0.7,5.65,2.02,4.05,4.1,14.76,63.15,54.55,22.82,14.52,57.41,26.59,3.75,5.94,13.69,7.27,25.39,26.44,118.29,107.86,0,105.99,85.13,135.31,87.25,102.86,121.67,181.16,Equal basal,1.9173576297557,2.02607928308658,2.75621870781132,4.02192564346284
Merged-chr9-95575220-6,chr9,95574923,95575494,+,850.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RSINE1|SINE|B4,15391,NM_198414,75552,Mm.151485,NM_198414,ENSMUSG00000064225,Paqr9,1700020G04Rik,progestin and adipoQ receptor family member IX,protein-coding,29.37,54.78,60.92,53.45,50.49,36.9,41.51,23.63,31.98,27.06,0,15.22,26.62,26.5,0,14.98,90.49,130.01,20.68,100.92,139.77,70.97,53.93,45.74,87.72,0,69.59,47.99,44.57,89.46,0,Equal basal,5.50773831543404,4.96766218724039,6.12525395885565,5.92122449752956
Merged-chr15-67905512-6,chr15,67905289,67905707,+,850,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,353358,NR_152182,380993,Mm.309526,NM_198644,ENSMUSG00000022335,Zfat,Gm922|Zfat1|Zfp406,zinc finger and AT hook domain containing,protein-coding,37.23,49.66,16.49,21.03,24.23,32.35,18.73,13.23,27.06,0,0,15.22,26.62,0,0,14.98,43.59,70.71,16.77,63.15,77.82,47.32,67.42,52.77,69.44,113.5,46.39,65.44,51.43,67.99,111.48,Equal basal,4.77305147416759,4.19607351760873,5.17887402701069,5.32474046246773
Merged-chr15-64092725-8,chr15,64092368,64092962,+,849.689575,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001276461, intron 27 of 28)","intron (NM_001276461, intron 27 of 28)",-32217,NM_001360037,223601,Mm.246108,NM_144846,ENSMUSG00000022378,Fam49b,0910001A06Rik|AW122079,"family with sequence similarity 49, member B",protein-coding,62.88,39.73,52.17,33.65,13.13,19.21,11.14,16.07,51.66,40.6,31.82,19.02,21.78,30.91,17.73,22.47,90.49,145.98,22.36,39.72,43.82,323.32,408.99,253.32,237.57,333.41,181.7,191.96,113.14,282.69,348.38,High basal,5.4509079468939,3.70406246257004,6.20773151654038,4.97142619484773
Merged-chr5-102032997-4,chr5,102032754,102033156,+,849.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172882, intron 2 of 66)","intron (NM_172882, intron 2 of 66)",36966,NM_172882,72145,Mm.332522,NM_172882,ENSMUSG00000043940,Wdfy3,2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993,WD repeat and FYVE domain containing 3,protein-coding,20.68,18.26,24.57,29.09,13.93,11.12,23.28,13.23,0,0,0,0,0,0,0,0,55.48,74.13,13.41,47.53,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.47048271042812,3.72631375768399,5.3813307118882,4.74122983121727
Merged-chr15-67087578-2,chr15,67087378,67087782,+,849.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,MLT1G3|LTR|ERVL-MaLR,89302,NM_009177,20442,Mm.248334,NM_009177,ENSMUSG00000013846,St3gal1,5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1,"ST3 beta-galactoside alpha-2,3-sialyltransferase 1",protein-coding,14.89,7.05,10.77,11.04,4.24,4.04,0,1.26,0,0,0,0,0,0,0,0,36.33,27.37,5.59,12.37,15.87,0,0,0,0,0,0,0,0,0,0,High basal,3.44944006186127,1.35146313305261,4.39494912031617,3.35803000664494
Merged-chr18-50098698-6,chr18,50098352,50099007,+,848.744446,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MER77|LTR|ERVL,-29522,NM_008292,15488,Mm.277857,NM_008292,ENSMUSG00000024507,Hsd17b4,17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2,hydroxysteroid (17-beta) dehydrogenase 4,protein-coding,6.62,0.64,0.67,7.8,11.11,7.08,4.56,4.41,120.54,27.06,18.18,60.87,154.87,150.16,35.46,59.93,7.27,9.12,9.5,45.57,51.37,141.95,148.31,98.51,105.99,198.63,900.76,916.17,270.85,948.28,654.96,Equal basal,1.81401965966718,2.61417999521123,2.62404743943999,4.71831009445282
Merged-chr3-105020491-4,chr3,105020321,105020652,+,847.604187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030249, intron 3 of 5)","intron (NM_030249, intron 3 of 5)",32467,NM_001163332,80281,Mm.200327,NM_030249,ENSMUSG00000062127,Cttnbp2nl,AA552995|AA589392|AU018624|BC003236|mKIAA1433,CTTNBP2 N-terminal like,protein-coding,32.68,10.25,14.47,19.28,13.53,14.66,13.16,5.67,0,0,0,0,0,0,0,0,36.33,63.86,13.41,26.04,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.11168451740502,3.3304523804644,4.98026936398504,4.62867715239098
Merged-chr1-171453067-9,chr1,171452623,171453350,+,847.588867,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172647, intron 1 of 9)","intron (NM_172647, intron 1 of 9)",15425,NM_172647,16456,Mm.294882,NM_172647,ENSMUSG00000038235,F11r,9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106,F11 receptor,protein-coding,13.65,16.98,5.05,13.67,27.26,29.82,28.85,19.22,54.12,72.17,77.29,163.58,96.79,260.57,110.8,172.3,21.14,27.37,20.12,66.41,91.41,335.15,314.61,186.47,222.95,212.82,676.54,654.4,394.28,407.94,529.54,Equal basal,3.49847819534894,4.47095864587917,4.02302001468371,5.50892638699268
Merged-chr12-33057444-7,chr12,33057257,33057630,+,847.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001024478, intron 8 of 19)","intron (NM_001024478, intron 8 of 19)",35432,NM_001024478,68764,Mm.60083,NM_001024478,ENSMUSG00000035860,Cdhr3,1110049B09Rik|BB172694|Cdh28,cadherin-related family member 3,protein-coding,13.65,18.26,8.08,10.69,8.89,7.08,5.57,6.3,118.08,85.7,68.19,98.91,120.99,75.08,35.46,112.37,25.1,22.81,10.62,14.97,23.42,319.38,400,288.5,405.69,461.1,340.2,397,185.14,311.32,404.12,Equal basal,3.60990007137301,2.71922157161939,4.01728558289375,3.89772722437861
Merged-chr12-32793971-3,chr12,32793791,32794113,+,845.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-26383,NM_021524,59027,Mm.202727,NM_021524,ENSMUSG00000020572,Nampt,1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin,nicotinamide phosphoribosyltransferase,protein-coding,11.58,35.56,6.06,16.3,4.04,3.54,2.02,2.21,44.28,27.06,0,0,0,26.5,0,0,31.04,60.44,6.71,14.32,12.84,106.46,44.94,63.33,51.17,35.47,46.39,30.54,27.43,10.74,0,High basal,3.84793990736903,1.67848067047383,4.83276903901876,3.40827027966578
Merged-chr15-90322824-8,chr15,90322581,90323104,+,844.322937,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-30868,NR_155426,102640415,Mm.394352,NR_155426,ENSMUSG00000116204,Gm36480,-,"predicted gene, 36480",ncRNA,25.24,18.58,13.46,26.81,14.54,11.62,21.77,3.47,100.86,180.43,90.92,140.75,133.09,220.82,39.89,89.9,46.9,70.71,16.21,36.46,40.04,524.41,485.39,281.46,420.31,425.64,463.91,357.74,332.57,411.52,62.71,Equal basal,4.31554773443203,3.26480443639454,5.22998824877711,4.74081217262053
Merged-chr4-105747924-4,chr4,105747763,105748079,+,844.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-493292,NR_151521,105244641,Mm.404914,NR_151521,NA,Gm12724,-,predicted gene 12724,ncRNA,14.48,23.71,23.22,21.56,10.1,19.71,11.64,5.99,0,0,0,0,0,0,0,0,26.42,46.76,11.74,30.6,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31150923636348,3.28933019023853,4.54268889617274,4.4566809553097
Merged-chr12-102646229-4,chr12,102646067,102646457,+,843.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172584, intron 2 of 9)","intron (NM_172584, intron 2 of 9)",38758,NR_035457,100316812,NA,NR_035457,ENSMUSG00000089324,Mir1936,mir-1936|mmu-mir-1936,microRNA 1936,ncRNA,21.1,21.78,19.86,19.63,13.93,13.65,23.28,7.88,0,0,0,0,0,0,0,0,27.74,53.6,21.24,28.65,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.32598613439069,3.59638046323037,4.67127366345967,4.58888775817689
Merged-chr4-150340976-7,chr4,150340829,150341126,+,842.645264,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001085492, intron 1 of 22)","intron (NM_001085492, intron 1 of 22)",59061,NM_001085492,68703,Mm.291274,NM_001085492,ENSMUSG00000039852,Rere,1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458,arginine glutamic acid dipeptide (RE) repeats,protein-coding,25.24,15.7,6.73,16.56,6.66,5.56,7.09,5.99,51.66,63.15,18.18,159.77,29.04,44.16,79.78,86.15,31.7,62.72,10.06,20.18,26.44,508.64,516.85,84.44,544.58,439.82,347.93,213.77,192,221.86,369.28,High basal,3.85768583286705,2.58476208059527,4.87327644073204,4.06190548803002
Merged-chr11-88087119-4,chr11,88086928,88087301,+,841.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10944,NR_045499,70393,Mm.386799,NR_045499,ENSMUSG00000018378,2210416O15Rik,-,RIKEN cDNA 2210416O15 gene,ncRNA,11.17,8.33,8.08,9.73,12.52,9.6,15.19,8.82,7.38,27.06,9.09,0,60.5,0,26.59,44.95,15.85,35.35,20.68,25.39,38.53,43.37,0,0,32.89,7.09,100.51,21.81,61.71,85.88,0,Equal basal,3.25539320640153,3.3537222116315,4.0046084466609,4.6689978556519796
Merged-chr6-146619747-10,chr6,146619409,146620142,+,841.233337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026281, intron 5 of 11)","intron (NM_026281, intron 5 of 11)",14817,NM_026281,67623,Mm.278037,NM_026281,ENSMUSG00000040234,Tm7sf3,2010003B14Rik|NARP1,transmembrane 7 superfamily member 3,protein-coding,22.75,25.31,40.39,30.23,1.21,1.01,4.05,4.1,260.77,239.06,336.42,281.51,142.77,110.41,186.15,206.01,60.11,51.32,3.35,13.67,24.93,571.73,530.33,425.71,423.97,475.29,208.76,270.49,212.57,264.8,222.96,High basal,4.80117694211893,1.52341414594702,5.18001750349452,3.3939699649513
Merged-chr10-98515030-4,chr10,98514847,98515198,+,840.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-163155,NR_045179,667438,Mm.414522,NR_045179,ENSMUSG00000112896,Gm8633,EG667438,predicted gene 8633,ncRNA,8.69,20.82,15.14,15.95,13.53,11.12,13.67,8.19,0,0,0,0,0,0,0,0,36.33,50.18,11.18,35.16,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.83647695551845,3.36794982280202,4.81167657078394,4.46833720444504
Merged-chr18-75867908-1,chr18,75867804,75868012,+,839.666687,.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145356, intron 1 of 4)",MTD|LTR|ERVL-MaLR,47730,NM_145356,207259,Mm.159332,NM_145356,ENSMUSG00000044646,Zbtb7c,B230208J24Rik|Kr-pok|Zbtb36,zinc finger and BTB domain containing 7C,protein-coding,2.48,1.92,2.02,1.84,11.91,7.58,8.1,4.1,0,0,0,22.82,38.72,8.83,0,18.73,1.32,10.26,11.18,36.46,33.24,3.94,17.98,35.18,3.65,0,65.72,104.7,17.14,93.04,76.64,Equal basal,1.5364347418052,2.79038394133476,1.85676471630299,4.48520038502046
Merged-chr6-142710904-3,chr6,142710753,142711093,+,839.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8649,NM_001310143,20928,Mm.35670,NM_011511,ENSMUSG00000030249,Abcc9,AI414027|AI449286|SUR2A|SUR2B|Sur2,"ATP-binding cassette, sub-family C (CFTR/MRP), member 9",protein-coding,16.96,8.97,8.08,20.33,8.08,8.59,7.09,10.08,0,0,0,0,0,0,0,0,32.36,43.34,9.5,35.16,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.6723509768386,2.98027025166055,4.62975926213562,4.40567290908273
Merged-chr6-128798411-4,chr6,128798252,128798585,+,839.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9777,NM_008527,17059,Mm.480764,NM_008527,ENSMUSG00000030325,Klrb1c,AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c,killer cell lectin-like receptor subfamily B member 1C,protein-coding,12.41,18.26,11.44,24.36,15.55,7.58,10.12,9.77,4.92,0,0,22.82,0,8.83,0,14.98,36.99,55.88,12.86,34.51,52.13,0,0,14.07,0,0,0,0,13.71,0,0,Equal basal,3.98120049345079,3.2339987155695,4.89928955230017,4.7321139383894
Merged-chr2-122652472-2,chr2,122652220,122652634,+,838.166626,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,11624,NR_030547,387165,NA,NR_030547,ENSMUSG00000076309,Mir147,Mirn147|mmu-mir-147,microRNA 147,ncRNA,4.96,4.49,0,4.21,7.67,6.57,8.61,9.14,19.68,18.04,27.28,0,24.2,70.66,48.75,52.44,1.98,3.42,11.74,29.95,26.44,35.49,31.46,77.4,43.86,0,220.36,274.85,140.57,207.55,243.87,Equal basal,1.76267240862028,2.87235481531231,1.41026996595676,4.31140935129474
Merged-chr19-34402877-5,chr19,34402732,34403136,+,836.080017,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,72201,NM_009890,12642,Mm.30824,NM_009890,ENSMUSG00000050370,Ch25h,AI462618|m25OH,cholesterol 25-hydroxylase,protein-coding,4.55,15.38,6.73,26.11,7.27,3.03,6.58,4.41,14.76,27.06,0,45.65,0,0,22.16,0,25.1,45.62,10.06,33.86,30.98,94.63,134.83,98.51,65.79,120.6,27.06,82.89,72,64.41,62.71,High basal,3.43984787478122,2.35779710669809,4.49042866505884,4.37093293326621
Merged-chr18-74876733-4,chr18,74876591,74876892,+,834.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,84522,NM_010720,16891,Mm.299647,NM_010720,ENSMUSG00000053846,Lipg,3110013K01Rik|EL|lipase|mEDL,"lipase, endothelial",protein-coding,6.62,7.69,9.09,12.88,14.14,10.61,9.11,7.56,0,0,0,0,0,0,0,0,21.8,30.79,13.41,33.86,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,3.1948952495455,3.21373123416152,4.12387781134711,4.66163419999445
Merged-chr18-69300661-6,chr18,69300486,69300875,+,833.733337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-43812,NM_013685,21413,Mm.4269,NM_013685,ENSMUSG00000053477,Tcf4,5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19,transcription factor 4,protein-coding,9.52,6.09,7.74,11.92,12.72,8.09,11.64,4.1,29.52,81.19,0,64.67,16.94,44.16,26.59,29.97,21.14,22.81,6.15,32.55,38.53,220.8,31.46,147.77,201.02,290.85,173.97,152.69,174.85,143.14,167.22,Equal basal,3.12960500677599,2.95307050511974,3.90034447867912,4.23679949527032
Merged-chr15-59264197-3,chr15,59264005,59264414,+,832.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-42739,NR_045613,100416830,Mm.490788,NR_045613,ENSMUSG00000098528,Zfp572,4930472F24Rik,zinc finger protein 572,pseudo,21.51,10.25,17.84,17,5.25,3.54,7.59,2.84,0,0,0,11.41,0,0,0,0,28.4,63.86,6.15,14.32,26.44,0,0,31.66,0,0,0,0,30.86,7.16,0,High basal,4.00112376388999,2.14828471039345,4.81006025155814,3.69225126488917
Merged-chr7-97148598-3,chr7,97148435,97148767,+,832.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001162477, intron 1 of 9)",L1MB3|LINE|L1,66850,NM_010248,14389,Mm.42033,NM_010248,ENSMUSG00000004508,Gab2,AI463667|D130058I17Rik|p97,growth factor receptor bound protein 2-associated protein 2,protein-coding,15.72,13.46,13.13,12,6.06,7.08,12.15,2.52,0,0,0,0,0,0,0,0,17.17,21.67,11.18,20.83,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.758108308269,2.59945340391222,3.72647622410653,4.23896339359233
Merged-chr11-83619217-3,chr11,83619084,83619357,+,831.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_036453, intron 5 of 8)","intron (NR_036453, intron 5 of 8)",-26133,NM_009139,20305,Mm.137,NM_009139,ENSMUSG00000018927,Ccl6,MRP-1|Scya6|c10,chemokine (C-C motif) ligand 6,protein-coding,17.79,12.17,6.73,14.9,6.06,4.04,10.12,4.41,0,0,0,0,0,0,0,0,17.83,37.63,12.3,13.02,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.62397868412904,2.53497228247592,4.12609566365216,3.87251400518806
Merged-chr6-148621786-3,chr6,148621602,148621936,+,830.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-7460,NR_045867,622319,Mm.491049,NM_001037912,ENSMUSG00000070995,Gm6313,EG622319,predicted gene 6313,ncRNA,15.72,13.13,10.43,9.46,9.69,6.07,17.21,6.93,0,0,0,0,0,0,0,0,32.36,37.63,10.06,35.16,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,3.58767301205727,3.10900532121078,4.53233491101528,4.48914563649794
Merged-chr17-53594941-6,chr17,53594676,53595259,+,830.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001190846, intron 1 of 17)",CT-rich|Low_complexity|Low_complexity,10841,NM_001190846,18519,Mm.255025,NM_020005,ENSMUSG00000000708,Kat2b,A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF,K(lysine) acetyltransferase 2B,protein-coding,46.33,26.27,27.26,37.94,22.62,17.18,21.77,17.01,31.98,63.15,0,0,0,53,26.59,0,74.64,87.81,26.83,60.55,67.99,43.37,53.93,66.85,120.61,106.41,61.86,69.8,34.29,75.15,0,Equal basal,5.01016101721958,4.09276817215318,5.71029064258605,5.45980697123528
Merged-chr5-32104302-4,chr5,32104144,32104505,+,829.854187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-32148,NM_008037,14284,Mm.24684,NM_008037,ENSMUSG00000029135,Fosl2,Fra-2,fos-like antigen 2,protein-coding,19.86,10.25,16.15,18.84,10.3,10.11,15.19,4.41,0,0,0,0,0,0,0,0,30.38,42.2,10.62,31.9,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97985782259181,3.10041918540966,4.56764829657755,4.46850425313835
Merged-chr15-6733238-4,chr15,6733046,6733514,+,829.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030168, intron 2 of 37)","intron (NM_030168, intron 2 of 37)",24899,NM_030168,78757,Mm.275811,NM_030168,ENSMUSG00000050310,Rictor,4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik,"RPTOR independent companion of MTOR, complex 2",protein-coding,11.58,23.07,16.15,23.57,22.01,12.64,9.62,13.55,0,0,0,0,0,0,0,0,46.24,54.74,14.53,37.11,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.14761587306048,3.60327933805424,5.04063459239811,4.82184561974961
Merged-chr14-66811185-4,chr14,66811055,66811329,+,827.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009955, intron 11 of 13)","intron (NM_009955, intron 11 of 13)",57408,NM_009955,12934,Mm.352648,NM_009955,ENSMUSG00000022048,Dpysl2,AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2,dihydropyrimidinase-like 2,protein-coding,14.07,10.89,13.46,10.34,13.93,6.07,13.67,8.82,0,0,0,0,0,0,0,0,23.78,42.2,9.5,38.41,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,3.62172998133467,3.21154688263794,4.39949319573098,4.49547451907273
Merged-chr14-61968666-4,chr14,61968521,61968823,+,826.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-286299,NR_028264,668253,Mm.32886,NR_028264,ENSMUSG00000097589,Dleu2,1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2,"deleted in lymphocytic leukemia, 2",ncRNA,16.55,12.81,17.84,16.3,11.91,18.7,13.16,7.56,0,0,0,0,0,0,0,0,19.82,29.65,15.65,25.39,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,3.9705391164792,3.46352451969178,4.03371892762244,4.54015951594894
Merged-chr18-76200761-3,chr18,76200375,76201079,+,826.166687,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,30175,NR_105776,102465184,NA,NR_105776,ENSMUSG00000098276,Mir6358,Gm27830|mmu-mir-6358,microRNA 6358,ncRNA,3.31,7.05,5.38,5.96,10.1,16.17,13.67,10.4,44.28,63.15,18.18,22.82,79.85,97.16,62.05,89.9,4.62,12.54,20.68,31.25,60.44,173.49,89.89,112.58,175.44,113.5,545.1,484.26,311.99,300.59,620.12,Equal basal,2.56735594117155,3.4698998169696,2.55760358859634,4.97450377131668
Merged-chr17-50134492-4,chr17,50134225,50134829,+,823.775024,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_181397, intron 2 of 9)","intron (NM_181397, intron 2 of 9)",55970,NM_181397,76438,Mm.41854,NM_181397,ENSMUSG00000039316,Rftn1,2310015N21Rik|AI853526,raftlin lipid raft linker 1,protein-coding,8.27,13.46,6.73,8.5,9.69,18.7,10.12,11.34,29.52,81.19,68.19,41.85,125.83,101.58,146.26,239.72,15.19,38.77,7.83,30.6,46.09,429.78,269.66,137.21,127.92,262.48,823.45,846.36,353.14,658.43,411.09,Equal basal,3.22432769822055,3.4517779573213,4.03996348180929,4.39649705508003
Merged-chr6-29624004-3,chr6,29623803,29624158,+,823.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-14131,NM_001347079,320938,Mm.276381,NM_177296,ENSMUSG00000012535,Tnpo3,5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133,transportin 3,protein-coding,14.07,19.22,18.51,13.67,3.23,4.55,9.11,5.67,0,0,0,0,0,0,0,0,21.8,19.39,8.38,20.83,21.15,0,0,0,0,0,0,0,0,0,0,High basal,4.00562226725089,2.40376407183857,3.81321154621491,3.89385290870423
Merged-chr15-100403482-7,chr15,100403312,100403654,+,823.495239,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008732, intron 9 of 16)","intron (NM_008732, intron 9 of 16)",19572,NM_001146161,18174,Mm.234608,NM_008732,ENSMUSG00000023030,Slc11a2,DCT1|DMT1|Nramp2|mk|van,"solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2",protein-coding,28.96,16.66,8.75,20.42,13.73,11.62,23.79,13.55,71.34,27.06,54.55,95.1,53.24,48.58,35.46,112.37,36.33,39.92,19.56,38.41,30.98,138,85.39,70.37,120.61,156.07,139.17,87.25,58.28,132.4,125.42,Equal basal,4.09377810971195,3.72631375768399,4.65299259455622,4.73336899085134
Merged-chr11-30183969-7,chr11,30183565,30184208,+,821.069702,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_175836, intron 1 of 34)","intron (NM_175836, intron 1 of 34)",14371,NM_009260,20742,Mm.123110,NM_009260,ENSMUSG00000020315,Sptbn1,9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049,"spectrin beta, non-erythrocytic 1",protein-coding,20.27,10.25,19.52,25.41,22.21,15.16,14.68,6.3,54.12,76.68,4.55,49.45,21.78,97.16,57.62,82.41,53.5,44.48,7.83,54.69,86.88,153.77,206.74,197.02,138.89,127.69,262.88,213.77,144,164.61,167.22,Equal basal,4.14918540755626,3.58169010925194,4.99856615665086,4.96484485057546
Merged-chr11-22930299-3,chr11,22930048,22930533,+,820.755554,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001361661, intron 2 of 2)",ORR1B1|LTR|ERVL-MaLR,-41715,NM_011663,22183,Mm.29542,NM_011663,ENSMUSG00000044068,Zrsr1,D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs,"zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1",protein-coding,15.72,10.25,13.46,16.39,10.1,7.58,9.62,5.04,0,0,0,0,0,0,0,0,25.1,57.02,15.65,28,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.79116661159942,2.86456473015254,4.6458992186273,4.48414704061704
Merged-chr12-35021574-4,chr12,35021426,35021734,+,820.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-25609,NM_001014973,217463,Mm.213991,NM_001014973,ENSMUSG00000020590,Snx13,Rgs-px1|mKIAA0713,sorting nexin 13,protein-coding,28.96,15.06,14.14,26.29,2.42,6.07,2.53,3.78,49.2,9.02,22.73,41.85,14.52,0,4.43,22.47,21.14,33.07,8.38,13.67,25.69,55.2,40.45,31.66,91.37,0,38.66,26.18,0,64.41,0,High basal,4.30041110603202,1.92887723918687,4.15181917296241,3.79407613875078
Merged-chr12-17723182-5,chr12,17722869,17723516,+,820.43335,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_016677, intron 1 of 3)","intron (NM_016677, intron 1 of 3)",32383,NM_016677,53602,Mm.313619,NM_016677,ENSMUSG00000071379,Hpcal1,NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3,hippocalcin-like 1,protein-coding,2.48,4.49,6.73,3.5,12.52,2.02,13.16,10.4,59.04,36.09,27.28,106.52,84.69,53,119.67,44.95,5.28,18.25,11.18,29.95,21.91,145.89,125.84,84.44,186.4,163.16,429.12,379.55,305.14,382.89,494.7,Equal basal,2.2716706525716,2.93219996775648,2.87432402974579,4.2040335943805
Merged-chr11-31948291-6,chr11,31948017,31948689,+,819.611084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-17280,NM_026262,67592,Mm.78654,NM_026262,ENSMUSG00000020299,4930524B15Rik,-,RIKEN cDNA 4930524B15 gene,protein-coding,11.58,2.56,4.38,14.72,12.72,9.6,13.67,11.34,59.04,9.02,0,3.8,70.18,88.33,115.24,149.83,12.55,18.25,13.41,56.64,71.02,94.63,40.45,126.66,95.03,70.94,471.64,440.63,349.71,518.87,376.25,Equal basal,2.86942409520196,3.3899838059659,3.40607214825951,5.1280590803801704
Merged-chr5-96948962-4,chr5,96948818,96949106,+,818.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,27690,NR_131152,666266,Mm.32442,NR_131152,ENSMUSG00000106357,Gm8013,EG666266,predicted gene 8013,ncRNA,15.31,14.1,16.83,16.91,6.26,2.53,12.15,6.93,29.52,0,31.82,68.47,36.3,0,22.16,22.47,21.14,22.81,10.62,25.39,25.69,43.37,71.91,17.59,65.79,21.28,131.44,78.53,44.57,28.63,83.61,High basal,3.96406746363645,2.55731381983882,3.90034447867912,4.17726734398319
Merged-chr10-8769529-6,chr10,8769362,8769698,+,816.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_175155, intron 8 of 19)","intron (NM_175155, intron 8 of 19)",116540,NM_175155,70097,Mm.338275,NM_175155,ENSMUSG00000015305,Sash1,1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790,SAM and SH3 domain containing 1,protein-coding,18.2,15.7,16.15,21.73,11.71,11.12,15.69,8.82,31.98,18.04,27.28,22.82,14.52,110.41,31.03,18.73,54.82,50.18,10.06,44.92,32.49,126.17,175.28,45.74,182.75,212.82,146.91,87.25,82.28,225.44,167.22,Equal basal,4.13452134374907,3.39662297494458,5.09954471462343,4.52437141978442
Merged-chr2-155765193-2,chr2,155765083,155765324,+,815.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10139,NM_010808,17391,Mm.389325,NM_010808,ENSMUSG00000027612,Mmp24,AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5,matrix metallopeptidase 24,protein-coding,7.03,12.17,5.05,7.01,7.47,10.11,7.59,8.51,4.92,9.02,27.28,0,4.84,26.5,39.89,7.49,12.55,22.81,11.74,22.79,24.18,63.09,58.43,42.22,43.86,42.56,30.93,43.63,41.14,85.88,41.81,Equal basal,2.95363906123892,2.95077274099271,3.55397363373301,4.1455981166547
Merged-chr16-85147588-2,chr16,85147479,85147712,+,812.033325,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001198825, intron 1 of 15)","intron (NM_001198825, intron 1 of 15)",26112,NM_001198825,11820,Mm.277585,NM_007471,ENSMUSG00000022892,App,Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp,amyloid beta (A4) precursor protein,protein-coding,0.83,5.45,0,3.24,8.48,7.58,7.59,0.63,0,0,0,0,12.1,26.5,26.59,26.22,7.27,0,7.83,30.6,27.2,51.26,13.48,31.66,40.2,127.69,73.45,87.25,99.43,107.35,188.13,Equal basal,1.30945270703285,2.24657245081652,1.32291374401781,4.1529399145797
Merged-chr11-97719208-4,chr11,97718913,97719387,+,811.822937,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_054051, intron 9 of 9)","intron (NM_054051, intron 9 of 9)",15716,NM_011971,26446,Mm.21874,NM_011971,ENSMUSG00000069744,Psmb3,AL033320|C10-II,"proteasome (prosome, macropain) subunit, beta type 3",protein-coding,2.9,9.61,3.7,7.1,11.11,11.12,8.1,4.73,39.36,22.55,40.92,22.82,21.78,30.91,110.8,67.42,12.55,14.83,11.18,23.44,28.71,130.12,67.42,21.11,73.1,163.16,135.31,292.3,85.71,203.97,250.83,Equal basal,2.50297537592224,2.95606745910112,3.27107600730344,4.21468003918341
Merged-chr2-103719106-3,chr2,103718965,103719245,+,810.166687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_178890),TTS (NM_178890),42165,NM_153126,98956,Mm.288005,NM_153126,ENSMUSG00000027185,Nat10,AI429152,N-acetyltransferase 10,protein-coding,5.38,5.13,4.04,10.25,10.3,5.56,15.19,5.99,0,0,0,0,0,0,0,0,17.83,19.39,11.18,29.95,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.66943311059645,2.96351664122656,3.67795099231928,4.505927603581
Merged-chr10-98494551-4,chr10,98494398,98494701,+,809.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-142682,NR_045179,667438,Mm.414522,NR_045179,ENSMUSG00000112896,Gm8633,EG667438,predicted gene 8633,ncRNA,9.52,8.01,10.1,15.33,10.5,12.64,18.22,6.62,0,0,0,0,0,0,0,0,24.44,23.95,15.65,38.41,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.40095870130877,3.34220629848833,4.03174452272448,4.58327189591392
Merged-chr8-85560139-4,chr8,85559939,85560340,+,809.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTC|LTR|ERVL-MaLR,-4868,NM_019794,56445,Mm.475573,NM_019794,ENSMUSG00000031701,Dnaja2,1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3,DnaJ heat shock protein family (Hsp40) member A2,protein-coding,9.93,10.89,7.07,9.11,14.94,15.16,20.75,12.92,0,0,0,0,0,0,0,0,25.1,23.95,17.33,31.25,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.23915275336553,3.79295819409318,4.04996509543561,4.73404962885601
Merged-chr9-7259880-4,chr9,7259731,7260096,+,809.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B1_Mus2|SINE|Alu,-12601,NM_008607,17386,Mm.5022,NM_008607,ENSMUSG00000050578,Mmp13,Clg|MMP-13|Mmp1,matrix metallopeptidase 13,protein-coding,10.76,18.9,6.73,13.93,11.11,4.55,10.12,7.56,0,0,0,0,0,0,0,0,28.4,29.65,10.62,25.39,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.58102403716068,2.88499675621885,4.2790489084647,4.25156529463474
Merged-chr3-56575604-2,chr3,56575439,56575768,+,806,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,GSAT_MM|Satellite|Satellite,-391902,NM_030595,26422,Mm.384353,NM_030595,ENSMUSG00000027799,Nbea,Lyst2|mKIAA1544,neurobeachin,protein-coding,17.79,9.29,10.77,17.7,4.04,6.07,0.51,6.93,0,0,0,0,0,0,0,0,15.19,5.7,31.86,18.88,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.73556319425413,1.93140772048543,2.82225631668479,4.49361686252443
Merged-chr3-116166495-4,chr3,116166068,116166761,+,805.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-36726,NM_011693,22329,Mm.76649,NM_011693,ENSMUSG00000027962,Vcam1,CD106|Vcam-1,vascular cell adhesion molecule 1,protein-coding,35.16,20.82,26.92,25.32,19.18,25.78,29.87,12.92,12.3,27.06,0,0,19.36,0,0,0,56.8,79.83,17.89,46.88,71.02,0,17.98,0,3.65,0,0,0,0,3.58,0,Equal basal,4.68269161730579,4.1728551568536,5.45013264065023,5.1715005095361
Merged-chr19-44373154-4,chr19,44372992,44373315,+,805.458374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,34556,NM_009127,20249,Mm.267377,NM_009127,ENSMUSG00000037071,Scd1,AA589638|AI265570|Scd|Scd-1|ab,stearoyl-Coenzyme A desaturase 1,protein-coding,13.65,15.7,10.1,14.2,15.95,8.09,17.72,9.45,14.76,9.02,0,0,0,4.42,0,0,25.1,22.81,14.53,31.9,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.72493353654766,3.45623722976606,4.01728558289375,4.55313682014972
Merged-chr12-35833115-3,chr12,35832971,35833274,+,804.437012,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-92499,NM_207531,403205,Mm.190508,NM_207531,ENSMUSG00000036231,Agr3,BCMP11|E030025L21Rik|Gm888,anterior gradient 3,protein-coding,14.48,19.22,15.14,23.04,9.69,13.14,4.56,6.3,61.5,45.11,59.1,22.82,14.52,57.41,26.59,41.2,31.7,37.63,10.62,26.69,19.64,354.86,283.14,105.55,303.36,127.69,108.25,157.06,130.28,146.71,229.93,High basal,4.11234259981181,2.88417367134525,4.51807626561922,4.07895801113806
Merged-chr11-82088190-3,chr11,82087953,82088358,+,803.361084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13690,NM_011331,20293,Mm.867,NM_011331,ENSMUSG00000035352,Ccl12,MCP-5|Scya12,chemokine (C-C motif) ligand 12,protein-coding,13.65,15.06,8.75,12,11.31,22.24,12.65,15.75,0,0,0,0,0,0,0,0,14.53,29.65,15.09,42.97,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,3.60547118351314,3.73840754196583,3.82688791238652,4.90737872115821
Merged-chr15-91254339-4,chr15,91254193,91254486,+,802.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-62332,NM_001358967,26874,Mm.295456,NM_011994,ENSMUSG00000055782,Abcd2,ABC39|ALDL1|ALDR|ALDRP,"ATP-binding cassette, sub-family D (ALD), member 2",protein-coding,15.72,8.33,17.84,21.47,10.3,6.57,8.61,6.62,0,0,0,0,0,0,0,0,35.01,49.04,13.97,22.79,20.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.90640550536683,2.85054057741335,4.76995045030926,4.14825036828906
Merged-chr1-36572956-4,chr1,36572708,36573152,+,801.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001126046, intron 12 of 14)","intron (NM_001126046, intron 12 of 14)",-14549,NM_001126047,20353,Mm.29558,NM_001126047,ENSMUSG00000026121,Sema4c,AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I,"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C",protein-coding,16.13,16.02,13.8,10.51,15.95,26.79,18.73,10.71,0,0,0,0,0,0,0,0,26.42,44.48,16.21,36.46,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,3.7923100833919,3.90780409612795,4.50798298404985,4.95042594745288
Merged-chr1-23399759-4,chr1,23399560,23399911,+,800.575012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1ME2|LINE|L1,-16560,NM_001081079,70155,Mm.28013,NM_001081079,ENSMUSG00000026158,Ogfrl1,2210417C17Rik,opioid growth factor receptor-like 1,protein-coding,8.69,11.85,13.46,21.12,14.34,12.13,21.77,10.71,0,0,0,0,0,0,0,0,15.85,41.06,16.77,39.06,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,3.70594159767142,3.66277344923122,4.1076060391931,4.98079604876705
Merged-chr16-35898186-3,chr16,35898003,35898339,+,800.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1_Rod|LINE|L1,-26789,NM_001039530,547253,Mm.244406,NM_001039530,ENSMUSG00000034422,Parp14,1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268,"poly (ADP-ribose) polymerase family, member 14",protein-coding,14.07,17.94,5.38,14.98,6.06,8.09,7.09,7.56,0,0,0,0,0,0,0,0,18.49,26.23,11.18,18.88,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.61304557786321,2.79895280547716,3.90422399358618,4.12878741086579
Merged-chr10-13306982-2,chr10,13306719,13307292,+,799.5,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001195065, intron 1 of 12)","intron (NM_001195065, intron 1 of 12)",17284,NM_001195096,215789,Mm.283359,NM_001033257,ENSMUSG00000062866,Phactr2,AV158170|BC012871,phosphatase and actin regulator 2,protein-coding,6.21,6.09,7.07,5.26,4.64,5.05,4.05,3.15,14.76,36.09,0,0,29.04,61.83,0,0,7.27,13.69,4.47,31.25,34.75,23.66,13.48,66.85,10.96,120.6,61.86,52.35,68.57,7.16,27.87,Equal basal,2.69811087217393,2.14405009310887,2.87580335940287,4.03568849991995
Merged-chr6-82044719-6,chr6,82044543,82044868,+,799.236084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_145570, intron 1 of 2)","intron (NM_145570, intron 1 of 2)",3077,NM_145570,232146,Mm.489683,NM_145570,ENSMUSG00000035104,Eva1a,BC014699|Fam176a|Tmem166,eva-1 homolog A (C. elegans),protein-coding,24.41,22.75,35.34,40.57,2.42,5.05,2.53,1.26,61.5,148.85,104.56,114.12,7.26,0,31.03,29.97,33.69,90.09,3.91,14.97,14.35,212.92,224.72,28.15,332.6,148.97,119.84,174.51,78.86,85.88,146.32,High basal,4.84151472623127,1.59754853649176,5.17030930557826,3.24932819788484
Merged-chr6-115991810-2,chr6,115991514,115992352,+,798.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_026376, intron 1 of 35)","intron (NM_026376, intron 1 of 35)",3072,NM_026376,67784,Mm.3085,NM_026376,ENSMUSG00000030123,Plxnd1,6230425C21Rik|b2b1863Clo|b2b553Clo,plexin D1,protein-coding,14.89,26.59,14.81,15.42,8.68,2.53,8.61,7.88,0,0,0,0,0,0,0,0,46.24,47.9,12.86,14.32,25.69,0,0,0,0,0,0,0,0,0,0,High basal,4.10266439849923,2.56052556203243,4.94758286966693,4.00659516890356
Merged-chr3-97867005-3,chr3,97866743,97867215,+,797.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039376, intron 1 of 46)","intron (NM_001039376, intron 1 of 46)",21728,NM_001289702,83679,Mm.129840,NM_031401,ENSMUSG00000038170,Pde4dip,4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454,phosphodiesterase 4D interacting protein (myomegalin),protein-coding,6.62,11.21,6.73,14.28,10.3,4.04,10.12,4.1,0,0,0,0,0,0,0,0,24.44,36.49,9.5,25.39,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.25700555791211,2.64735368917321,4.31805259770792,4.27594467397981
Merged-chr7-4297337-5,chr7,4297184,4297523,+,794.789978,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,23164,NM_008848,18729,Mm.326531,NM_008848,NA,Pira6,12M1|Pira10|p91B,paired-Ig-like receptor A6,protein-coding,12,10.57,6.06,8.32,11.71,11.12,6.58,7.88,7.38,76.68,40.92,57.06,87.11,17.67,53.19,0,7.93,14.83,7.83,27.34,31.73,177.43,161.8,154.8,146.2,106.41,185.57,148.33,137.14,175.34,209.03,Equal basal,3.20425393686595,3.06097409264739,2.9801634102024,4.17187886087056
Merged-chr11-71996115-4,chr11,71995922,71996291,+,794.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,41403,NM_053245,114230,Mm.95707,NM_053245,ENSMUSG00000040554,Aipl1,A930007I01Rik,aryl hydrocarbon receptor-interacting protein-like 1,protein-coding,7.03,11.21,9.09,14.63,9.49,6.07,10.63,5.04,0,0,0,0,0,0,0,0,20.48,23.95,12.86,32.55,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.34927386479344,2.82406311273103,3.91154850942844,4.45227540979608
Merged-chr14-30617481-3,chr14,30617296,30617638,+,790.777771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011103, intron 1 of 17)","intron (NM_011103, intron 1 of 17)",-7157,NM_001310682,18753,Mm.2314,NM_011103,ENSMUSG00000021948,Prkcd,AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd,"protein kinase C, delta",protein-coding,12.41,13.78,11.11,7.54,7.27,10.11,8.1,3.15,0,0,0,0,0,0,0,0,22.46,29.65,13.97,13.02,24.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.47311447286726,2.70036247028345,4.11845203775687,3.98929037389158
Merged-chr2-128240912-5,chr2,128240413,128241230,+,790.200012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,113246,NM_001284410,12125,Mm.141083,NM_009754,ENSMUSG00000027381,Bcl2l11,1500006F24Rik|Bim|Bod|bcl2-L-11,BCL2-like 11 (apoptosis facilitator),protein-coding,16.55,22.43,12.45,10.25,5.86,12.13,11.14,7.56,17.22,13.53,86.38,68.47,26.62,35.33,26.59,41.2,27.08,45.62,6.71,39.72,34,157.72,229.21,109.07,208.33,163.16,57.99,213.77,82.28,125.24,55.74,Equal basal,3.87746255439313,3.04865769781262,4.54248170933966,4.30874198640797
Merged-chr2-119993462-7,chr2,119993252,119993724,+,786.799988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001355293, intron 1 of 30)",MTD|LTR|ERVL-MaLR,20789,NM_011941,26390,Mm.330501,NM_011941,ENSMUSG00000033902,Mapkbp1,2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596,mitogen-activated protein kinase binding protein 1,protein-coding,11.17,8.97,4.71,10.16,11.71,3.03,6.07,3.78,46.74,85.7,81.83,76.08,21.78,0,84.21,52.44,15.85,28.51,8.38,31.25,43.06,331.21,197.75,182.95,493.41,489.48,204.89,292.3,72,275.54,299.61,Equal basal,3.12829015616342,2.46301660909007,3.85777151128081,4.4050721724642
Merged-chr7-16193905-3,chr7,16193763,16194057,+,786.177795,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER15|LTR|ERVL,18515,NR_102730,17537,Mm.360516,NM_008627,ENSMUSG00000041420,Meis3,AI573393|Mrg2,Meis homeobox 3,protein-coding,0,0.32,0,1.58,10.7,6.07,2.53,4.41,54.12,54.13,13.64,68.47,75.01,48.58,137.4,116.12,1.32,3.42,9.5,18.23,31.73,90.69,40.45,17.59,84.06,42.56,224.22,279.21,202.28,164.61,167.22,Low basal,0.331756151035777,2.39021541275602,1.25255104910898,4.07404392370212
Merged-chr8-41045312-5,chr8,41045147,41045512,+,785.573303,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001005863, intron 5 of 13)","intron (NM_001005863, intron 5 of 13)",-3398,NM_001005865,102103,Mm.149438,NM_001005863,ENSMUSG00000045636,Mtus1,AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288,mitochondrial tumor suppressor 1,protein-coding,21.51,14.1,10.43,22.26,8.89,12.13,4.05,10.08,31.98,31.57,40.92,68.47,31.46,0,53.19,33.71,41.61,58.16,11.74,15.63,36.26,126.17,125.84,7.04,91.37,113.5,185.57,161.42,37.71,164.61,202.06,Equal basal,4.01314879974129,2.98220794669122,5.00933523872747,4.16201372124541
Merged-chr4-41359570-3,chr4,41359430,41359730,+,785,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355508, intron 1 of 6)",B1F2|SINE|Alu,7617,NM_001355508,67123,Mm.289795,NM_023305,ENSMUSG00000028437,Ubap1,2700092A01Rik|NAG20|UBAP-1|Ubap,ubiquitin-associated protein 1,protein-coding,11.58,8.97,8.75,11.04,12.12,12.64,12.65,6.3,0,0,0,0,0,0,0,0,29.72,18.25,17.89,27.34,24.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.37361725199809,3.25544235529768,3.98546834729943,4.43568470944214
Merged-chr5-41563597-4,chr5,41563430,41563783,+,784.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,144085,NM_001310592,100972,Mm.41555,NM_027295,ENSMUSG00000029128,Rab28,2700023P08Rik|AW496496,"RAB28, member RAS oncogene family",protein-coding,4.96,6.41,6.06,6.92,23.43,25.78,21.77,19.22,0,0,0,0,0,0,0,0,17.17,18.25,29.06,52.09,70.26,0,0,0,0,0,0,0,0,0,0,Low basal,2.73150621485253,4.27234843650954,3.61280529020543,5.44203824184607
Merged-chr17-50996486-5,chr17,50996354,50996624,+,779.26001,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_028162, intron 3 of 21)","intron (NM_028162, intron 3 of 21)",162889,NM_001285993,72238,Mm.120650,NM_028162,ENSMUSG00000023923,Tbc1d5,1600014N05Rik,"TBC1 domain family, member 5",protein-coding,14.07,6.73,2.69,11.57,15.95,11.62,11.14,5.36,31.98,58.64,68.19,45.65,24.2,44.16,53.19,33.71,25.1,9.12,22.36,27.34,46.09,118.29,85.39,35.18,120.61,134.78,150.77,95.98,20.57,110.93,160.26,Equal basal,2.99568925442675,3.21640822953759,3.43136807467449,4.82244214088741
Merged-chr2-133499102-5,chr2,133498751,133499392,+,778.93335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-53088,NM_007553,12156,Mm.103205,NM_007553,ENSMUSG00000027358,Bmp2,AI467020|Bmp2a,bone morphogenetic protein 2,protein-coding,10.34,17.62,16.15,20.68,20.19,9.6,24.8,13.23,0,0,0,0,0,0,0,0,36.33,36.49,20.12,48.18,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95546193013724,3.8051147803863,4.59126117183688,4.93431306317844
Merged-chr7-58677453-4,chr7,58677272,58677696,+,776.5,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009728, intron 1 of 20)","intron (NM_009728, intron 1 of 20)",19282,NM_009728,11982,Mm.135129,NM_009728,ENSMUSG00000025324,Atp10a,Atp10c|pfatp,"ATPase, class V, type 10A",protein-coding,7.45,9.61,5.05,4.47,14.94,12.13,14.17,14.49,0,27.06,36.37,0,38.72,30.91,26.59,67.42,13.21,19.39,13.97,42.32,59.68,118.29,71.91,28.15,18.27,63.85,475.51,567.15,257.14,425.83,292.64,Equal basal,2.7708703302084,3.64792386509819,3.47940045624525,4.92844491858884
Merged-chr6-97971586-4,chr6,97971441,97971727,+,775.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001178049, intron 2 of 9)","intron (NM_001178049, intron 2 of 9)",-20199,NM_008601,17342,Mm.333284,NM_008601,ENSMUSG00000035158,Mitf,BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit,melanogenesis associated transcription factor,protein-coding,15.31,14.42,8.08,15.42,9.69,11.12,13.16,6.3,0,0,18.18,3.8,0,0,17.73,3.75,21.14,42.2,12.3,28.65,21.91,47.32,31.46,59.81,76.75,14.19,46.39,47.99,58.28,71.57,13.94,Equal basal,3.69040624747699,3.18103764114443,4.31946542457053,4.22675543954213
Merged-chr10-80948796-3,chr10,80948669,80948942,+,770,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_010319, exon 4 of 4)","3' UTR (NM_010319, exon 4 of 4)",18714,NM_008655,17873,Mm.1360,NM_008655,ENSMUSG00000015312,Gadd45b,AI323528|Myd118,growth arrest and DNA-damage-inducible 45 beta,protein-coding,7.03,15.06,4.71,8.32,10.3,3.54,12.15,5.99,0,0,0,0,0,0,0,0,21.14,23.95,18.44,23.44,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.06814644797993,2.75023283542508,3.93302399122098,4.46736439428231
Merged-chr9-7914698-2,chr9,7914521,7914850,+,769.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-41515,NM_007464,11796,Mm.2026,NM_007464,ENSMUSG00000032000,Birc3,AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2,baculoviral IAP repeat-containing 3,protein-coding,5.79,12.81,8.41,10.78,6.06,7.58,7.09,5.04,0,0,0,0,0,0,0,0,17.83,18.25,8.38,29.95,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.23345381295863,2.63017634251904,3.63803700812475,4.23306581699103
Merged-chr10-96294912-3,chr10,96294731,96295112,+,763.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLTR14|LTR|ERV1,68714,NR_110448,74881,Mm.410819,NR_110448,ENSMUSG00000112762,4930459C07Rik,-,RIKEN cDNA 4930459C07 gene,ncRNA,14.89,8.33,8.41,15.42,11.31,5.56,14.17,6.62,0,0,0,0,0,0,0,0,21.8,22.81,14.53,20.18,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.51925570583755,3.01027583585715,3.92119904749388,4.33364274572345
Merged-chr17-3079462-2,chr17,3079285,3079669,+,763.43335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"non-coding (NR_003519, exon 3 of 8)","non-coding (NR_003519, exon 3 of 8)",4706,NR_003519,328734,Mm.335641,NR_003519,NA,Pisd-ps2,D030013I16Rik,"phosphatidylserine decarboxylase, pseudogene 2",pseudo,12,10.57,14.47,14.55,3.63,0,1.52,2.84,0,0,0,0,0,0,0,0,14.53,14.83,20.12,19.53,24.93,0,0,0,0,0,0,0,0,0,0,High basal,3.66749380789684,1.14635269803946,3.36700584937693,4.33727000665209
Merged-chr11-3179100-2,chr11,3178958,3179249,+,763.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_030207, intron 5 of 32)","intron (NM_030207, intron 5 of 32)",14360,NM_030207,78887,Mm.394071,NM_030207,ENSMUSG00000023764,Sfi1,-,"Sfi1 homolog, spindle assembly associated (yeast)",protein-coding,14.89,4.16,16.83,15.77,2.83,3.03,4.05,5.04,0,0,0,0,0,0,0,0,11.23,33.07,33.54,13.02,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.54048247996205,2.02193412678796,3.73358389973981,4.35308892288702
Merged-chr10-15171349-2,chr10,15171224,15171466,+,761.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,MTD|LTR|ERVL-MaLR,411056,NM_008703,18101,Mm.487342,NM_008703,ENSMUSG00000019865,Nmbr,BB182387,neuromedin B receptor,protein-coding,22.75,9.61,14.14,24.1,1.41,0,4.56,0,0,0,0,0,0,0,0,0,13.87,34.21,3.91,7.81,8.31,0,0,0,0,0,0,0,0,0,0,High basal,4.03904030463623,0.714667563549385,3.89401093918168,2.73925083900967
Merged-chr5-100644091-5,chr5,100643901,100644230,+,758.93335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,30191,NM_027978,71883,Mm.260661,NM_027978,ENSMUSG00000029319,Coq2,2310002F18Rik|PHB:PPT,coenzyme Q2 4-hydroxybenzoate polyprenyltransferase,protein-coding,4.55,7.69,4.04,8.5,17.57,8.59,12.15,8.19,2.46,0,9.09,0,0,26.5,66.48,29.97,9.91,25.09,15.65,26.04,54.4,63.09,67.42,77.4,87.72,42.56,61.86,122.16,58.28,89.46,20.9,Equal basal,2.67859758539724,3.32814868166167,3.46622743181068,4.71247281719371
Merged-chr12-32640892-7,chr12,32640628,32641193,+,758.904785,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-179425,NM_021524,59027,Mm.202727,NM_021524,ENSMUSG00000020572,Nampt,1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin,nicotinamide phosphoribosyltransferase,protein-coding,14.07,19.22,18.51,24.8,23.02,14.66,22.27,12.6,120.54,94.72,86.38,30.43,48.4,61.83,8.86,11.24,26.42,34.21,13.97,48.18,86.13,165.6,71.91,84.44,109.65,49.66,170.1,95.98,96,114.51,6.97,Equal basal,4.20752575868704,3.94769113691597,4.32708975844827,5.16188975269299
Merged-chr2-155534330-4,chr2,155534058,155534474,+,757.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_019811, intron 2 of 17)","intron (NM_019811, intron 2 of 17)",16223,NM_019811,60525,Mm.255026,NM_019811,ENSMUSG00000027605,Acss2,1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1,acyl-CoA synthetase short-chain family member 2,protein-coding,17.38,30.43,14.14,19.19,2.02,1.01,6.58,1.26,51.66,99.23,81.83,60.87,9.68,4.42,0,0,36.33,35.35,1.12,19.53,10.58,78.86,112.36,77.4,76.75,85.13,11.6,8.73,30.86,0,0,High basal,4.25896560776315,1.45931527469901,4.5694514872137,2.79237907369519
Merged-chr19-12806439-6,chr19,12806252,12806581,+,756.452759,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_134152, intron 2 of 8)","intron (NM_134152, intron 2 of 8)",7837,NM_134152,107321,Mm.313136,NM_134152,ENSMUSG00000024696,Lpxn,4933402K05Rik|A530083L21Rik|AV278559|LDPL,leupaxin,protein-coding,13.65,12.17,8.08,15.42,1.41,3.03,6.07,1.58,66.42,40.6,54.55,83.69,19.36,22.08,35.46,52.44,16.51,39.92,5.03,16.28,12.84,193.2,233.71,38.7,168.13,156.07,88.92,117.79,48,121.67,83.61,High basal,3.60250552976648,1.59258573073516,4.11527940798362,3.34182826043587
Merged-chr1-16191374-2,chr1,16191246,16191501,+,756.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,85491,NM_133832,98711,Mm.274376,NM_133832,ENSMUSG00000025921,Rdh10,3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp,retinol dehydrogenase 10 (all-trans),protein-coding,4.96,7.05,6.06,11.65,4.44,7.08,3.54,5.36,0,0,0,0,0,0,0,0,21.8,9.12,10.62,23.44,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,2.93041988685386,2.3095437810838,3.33528153927462,4.23747883738592
Merged-chr12-16882704-6,chr12,16882502,16882916,+,747.418274,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B4A|SINE|B4,-12269,NM_009072,19878,Mm.276024,NM_009072,ENSMUSG00000020580,Rock2,B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619,Rho-associated coiled-coil containing protein kinase 2,protein-coding,12,12.81,6.39,9.81,14.74,11.62,12.65,11.03,118.08,76.68,81.83,114.12,133.09,110.41,35.46,127.35,5.94,13.69,9.5,29.3,39.29,138,206.74,91.48,138.89,198.63,131.44,178.87,178.28,182.5,264.77,Equal basal,3.33389351464512,3.45889078416567,2.75621870781132,4.38836749608177
Merged-chr4-122808322-3,chr4,122808198,122808440,+,742.027771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx5c|LINE|L1,-27908,NM_008917,19063,Mm.277719,NM_008917,ENSMUSG00000028657,Ppt1,9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT,palmitoyl-protein thioesterase 1,protein-coding,8.69,9.61,4.38,8.85,13.13,4.55,9.11,5.04,0,0,0,0,0,0,0,0,14.53,15.97,13.97,22.79,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,2.97206309265228,2.78001606336409,3.41486712033709,4.25251425074527
Merged-chr7-53626163-3,chr7,53625947,53626349,+,740.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,265741,NR_105746,102466619,NA,NR_105746,ENSMUSG00000099176,Mir6238,Gm27982|mmu-mir-6238,microRNA 6238,ncRNA,10.76,7.69,9.42,24.97,7.67,10.11,6.07,7.25,0,0,0,0,0,0,0,0,21.8,23.95,16.21,21.49,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.60007173018216,2.86824863948407,3.95387856003573,4.41205451220935
Merged-chr12-79359026-2,chr12,79358876,79359178,+,740.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009014, intron 7 of 10)","intron (NM_009014, intron 7 of 10)",61676,NM_001252562,19363,Mm.341756,NM_009014,ENSMUSG00000059060,Rad51b,AI553500|R51H2|Rad51l1|mREC2,RAD51 paralog B,protein-coding,9.1,13.13,9.76,8.24,10.5,7.58,7.59,3.15,0,0,0,0,0,0,0,0,15.19,15.97,7.83,26.69,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,3.34011282360443,2.66285889831036,3.444203971412,4.0641187656658
Merged-chr3-103927725-5,chr3,103927538,103927865,+,739.303345,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001356557, intron 1 of 6)","intron (NM_001356557, intron 1 of 6)",13581,NM_172684,229675,Mm.29366,NM_172684,ENSMUSG00000044098,Rsbn1,C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002,"rosbin, round spermatid basic protein 1",protein-coding,4.96,12.81,12.12,10.08,6.26,7.58,4.05,4.73,4.92,0,13.64,19.02,9.68,35.33,31.03,41.2,14.53,38.77,9.5,26.69,30.98,138,134.83,63.33,18.27,170.25,131.44,113.43,82.28,60.83,0,Equal basal,3.29844050502874,2.43171007537311,4.01062663073438,4.23589156398674
Merged-chr4-132898452-4,chr4,132898261,132898622,+,738.5979,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,TTS (NM_001163792),TTS (NM_001163792),-13983,NM_133887,100226,Mm.28237,NM_133887,ENSMUSG00000028879,Stx12,AI850350|AU041521|Stx13,syntaxin 12,protein-coding,0.83,0.32,0,0.53,16.16,22.24,16.7,9.14,14.76,0,0,22.82,50.82,97.16,26.59,22.47,0.66,0,13.41,47.53,63.46,7.89,4.49,17.59,0,42.56,104.38,104.7,72,150.29,292.64,Low basal,0.346976853561815,3.7557443298971,0.281847352415252,4.99284545245393
Merged-chr19-4338399-4,chr19,4338261,4338530,+,738.3125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001001984, intron 12 of 20)",B3A|SINE|B2,-32173,NM_001290818,110355,Mm.254144,NM_130863,ENSMUSG00000024858,Grk2,Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1,G protein-coupled receptor kinase 2,protein-coding,15.31,9.93,6.06,8.67,11.91,10.61,6.58,5.04,0,0,0,0,0,0,0,0,17.83,27.37,11.74,29.3,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.28032150374824,2.90286984287999,3.90861402960283,4.21598747456309
Merged-chr10-8715862-2,chr10,8715730,8716018,+,736.541626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,170196,NM_175155,70097,Mm.338275,NM_175155,ENSMUSG00000015305,Sash1,1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790,SAM and SH3 domain containing 1,protein-coding,10.76,7.37,10.43,7.97,11.11,6.07,11.14,4.73,0,0,0,0,0,0,0,0,12.55,15.97,12.3,23.44,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,3.2112125920451,2.86514859515862,3.3189372782636,4.25785082260669
Merged-chr1-89043157-3,chr1,89043016,89043308,+,734,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1D2|LTR|ERVL-MaLR,27049,NR_040471,73475,Mm.491040,NR_040471,ENSMUSG00000099378,1700067G17Rik,-,RIKEN cDNA 1700067G17 gene,ncRNA,7.86,10.25,5.05,8.24,9.69,9.1,15.69,10.4,0,0,0,0,0,0,0,0,13.87,11.4,25.15,22.79,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,2.98530048998711,3.31507741914148,3.17021099850356,4.58723107047246
Merged-chr7-30683605-5,chr7,30683467,30683754,+,733.339661,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1B1|LTR|ERVL-MaLR,-12005,NR_027848,74927,Mm.87326,NM_183108,ENSMUSG00000049761,Pmis2,1700071L20Rik|4930479M11Rik,"Pmis2, sperm specific protein",ncRNA,7.45,7.05,8.41,11.57,10.5,1.52,17.21,6.62,22.14,18.04,72.74,11.41,0,30.91,26.59,0,24.44,19.39,10.06,24.74,30.22,177.43,85.39,52.77,109.65,212.82,108.25,126.52,120,89.46,229.93,Equal basal,3.14507354113191,2.67595048747565,3.89107750890366,4.21540218901675
Merged-chr15-87077969-4,chr15,87077686,87078259,+,733,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-466327,NM_001252310,106014,Mm.244319,NM_134096,ENSMUSG00000054863,Fam19a5,TAFA5|Tafa-5|Tara-5,"family with sequence similarity 19, member A5",protein-coding,17.79,12.49,14.14,19.98,19.59,11.62,29.36,11.66,0,0,0,0,0,0,0,0,27.08,37.63,27.95,29.3,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96695175522749,3.86888964803744,4.40949579722849,4.9660026645934
Merged-chr7-123242466-4,chr7,123242316,123242598,+,732.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_146198, intron 6 of 16)","intron (NM_146198, intron 6 of 16)",27591,NM_146198,233836,Mm.211838,NM_146198,ENSMUSG00000030769,Slc5a11,2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10,"solute carrier family 5 (sodium/glucose cotransporter), member 11",protein-coding,8.27,16.02,6.06,9.29,10.7,6.07,9.11,7.25,0,0,0,0,0,0,0,0,14.53,22.81,16.21,20.18,26.44,0,0,0,0,0,0,0,0,0,0,Equal basal,3.28151310822907,2.92955942535354,3.64990347580649,4.27886687672639
Merged-chr6-54655895-2,chr6,54655747,54656078,+,729.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-25712,NM_001289741,68235,Mm.233860,NM_026629,ENSMUSG00000038065,Mturn,2410066E13Rik|AI448550|B230212L03Rik,"maturin, neural progenitor differentiation regulator homolog (Xenopus)",protein-coding,15.72,12.81,14.47,9.2,2.02,1.52,1.01,0.63,0,0,0,0,0,0,0,0,15.85,42.2,1.68,17.58,14.35,0,0,0,0,0,0,0,0,0,0,High basal,3.68771803346115,0.935085580409042,4.12655148965019,3.00400349995722
Merged-chr1-132054612-4,chr1,132054381,132054810,+,727.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001114662, intron 3 of 9)",B3|SINE|B2,13467,NM_172510,213006,Mm.208445,NM_172510,ENSMUSG00000059149,Mfsd4a,A230072B04|A930031D07Rik|AI850289|Mfsd4,major facilitator superfamily domain containing 4A,protein-coding,5.79,13.78,8.75,12.53,11.91,4.55,12.65,6.93,0,0,0,0,0,0,0,0,19.82,25.09,15.09,23.44,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32571889363099,2.93831505116973,3.92067696517037,4.43921758324895
Merged-chr17-50528069-4,chr17,50527901,50528326,+,719.952393,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_013880, intron 1 of 5)","intron (NM_013880, intron 1 of 5)",18566,NM_013880,224860,Mm.217362,NM_013880,ENSMUSG00000038910,Plcl2,PLC-L2|PRIP-2|Plce2|mKIAA1092,phospholipase C-like 2,protein-coding,13.24,14.74,11.78,14.81,11.51,10.11,6.58,3.47,27.06,27.06,0,0,12.1,30.91,13.3,0,20.48,39.92,3.91,26.69,30.22,82.8,166.29,59.81,95.03,191.54,88.92,157.06,75.43,118.09,292.64,Equal basal,3.76435282561992,2.75384769993202,4.25958800713122,3.84413718462659
Merged-chr8-34188876-3,chr8,34188573,34189188,+,712.222229,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-22168,NR_105820,102465211,NA,NR_105820,ENSMUSG00000098785,Mir6395,Gm27561|mmu-mir-6395,microRNA 6395,ncRNA,2.48,6.41,6.73,11.04,17.17,12.64,25.31,12.29,14.76,0,0,34.24,9.68,0,0,18.73,17.83,23.95,19.56,44.92,63.46,7.89,26.97,0,7.31,42.56,15.46,43.63,0,42.94,0,Equal basal,2.72958384883618,3.81967183936836,3.8186180061401,5.14014933130061
Merged-chr11-77404187-3,chr11,77404056,77404328,+,707.888916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177710, intron 4 of 14)","intron (NM_177710, intron 4 of 14)",55912,NM_001291190,237860,Mm.440381,NM_177710,ENSMUSG00000037926,Ssh2,SSH-2|SSH-2L|mSSH-2L,slingshot protein phosphatase 2,protein-coding,7.45,5.45,12.45,8.32,6.46,8.09,7.59,5.67,0,0,0,0,0,0,0,0,22.46,23.95,11.74,18.23,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.07157920697356,2.72723927237105,3.97414711371869,4.15806177957036
Merged-chr2-148580737-2,chr2,148580496,148580899,+,704,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-91918,NM_019761,56488,Mm.34663,NM_019761,ENSMUSG00000036992,Nxt1,1110001N02Rik,NTF2-related export protein 1,protein-coding,7.03,8.97,6.73,8.06,7.07,6.57,8.61,5.67,0,0,0,0,0,0,0,0,13.21,23.95,15.09,29.3,20.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.00865468404586,2.69737923426477,3.62006747006608,4.29843622303823
Merged-chr9-124257612-2,chr9,124257501,124257738,+,699.166626,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,55075,NM_001243118,630836,Mm.458553,NM_001243117,ENSMUSG00000074829,2010315B03Rik,BC029716,RIKEN cDNA 2010315B03 gene,protein-coding,3.31,3.52,5.72,11.22,7.47,11.12,7.59,8.51,0,0,0,0,0,0,0,0,8.59,19.39,34.65,23.44,23.42,0,0,0,0,0,0,0,0,0,0,Equal basal,2.54170992456451,2.98163723190991,3.20452791425524,4.64582163801306
Merged-chr16-92445587-4,chr16,92445460,92445766,+,696.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081549, intron 1 of 3)",B3A|SINE|B2,20556,NM_001081549,54720,Mm.265744,NM_019466,ENSMUSG00000022951,Rcan1,Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1,regulator of calcineurin 1,protein-coding,12.82,8.97,8.41,9.46,8.89,4.04,14.17,4.41,0,0,0,0,0,0,0,0,20.48,22.81,12.3,23.44,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32004075599093,2.76027302564796,3.87886899688659,4.1349677742346
Merged-chr1-105978405-3,chr1,105978249,105978584,+,683.666687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,TTS (NR_151625),TTS (NR_151625),11866,NR_151625,635504,Mm.359717,NR_151625,NA,Gm7160,EG635504,predicted gene 7160,ncRNA,6.62,8.97,4.38,6.13,7.88,3.03,14.17,5.36,22.14,31.57,0,3.8,14.52,8.83,22.16,0,17.83,17.11,10.06,29.3,42.31,114.35,89.89,80.92,76.75,21.28,96.65,74.17,89.14,67.99,83.61,Equal basal,2.76750369584133,2.67776781110972,3.59578445150027,4.44837987342176
Merged-chr1-171871934-2,chr1,171871768,171872084,+,683,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001289470, intron 3 of 8)",MER63C|DNA|hAT-Blackjack,32229,NM_013489,12523,Mm.259115,NM_013489,ENSMUSG00000038147,Cd84,A130013D22Rik|CDw84|SLAMF5,CD84 antigen,protein-coding,5.79,8.33,3.37,5.87,6.66,6.07,10.12,6.93,0,0,0,22.82,0,0,0,22.47,11.89,13.69,9.5,23.44,29.46,31.54,0,17.59,3.65,0,19.33,0,17.14,3.58,0,Equal basal,2.63295584643292,2.8114514010498,3.18477440045069,4.15355428768822
Merged-chr9-40548026-3,chr9,40547902,40548144,+,678.055542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-16640,NM_001357617,235283,Mm.138434,NM_172768,ENSMUSG00000040111,Gramd1b,3222402H23|A930008A22Rik|AI593249|mKIAA1201,GRAM domain containing 1B,protein-coding,6.21,12.17,4.38,4.47,12.72,12.64,6.58,7.25,22.14,27.06,0,60.87,14.52,26.5,39.89,59.93,7.93,11.4,11.74,22.79,30.22,63.09,26.97,59.81,62.13,28.38,88.92,104.7,37.71,96.62,139.35,Equal basal,2.72481441037301,3.08327029745266,2.81394929258142,4.24745229473607
Merged-chr6-5102507-3,chr6,5102377,5102649,+,675.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_181595, intron 7 of 15)","intron (NM_181595, intron 7 of 15)",91433,NM_011134,18979,Mm.237657,NM_011134,ENSMUSG00000002588,Pon1,Pon,paraoxonase 1,protein-coding,6.62,20.82,1.68,6.57,9.69,1.01,4.56,3.15,0,0,0,0,0,0,0,0,23.78,17.11,8.94,39.72,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,2.77987874832691,2.00374838492195,3.7902182077416,4.49312071051787
Merged-chrX-101132719-3,chrX,101132571,101132853,+,661.888916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001110311, intron 4 of 5)","intron (NM_001110311, intron 4 of 5)",-47307,NM_007515,11989,Mm.5140,NM_007515,ENSMUSG00000031297,Slc7a3,Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2,"solute carrier family 7 (cationic amino acid transporter, y+ system), member 3",protein-coding,8.69,8.33,6.73,6.66,6.87,11.12,1.52,5.99,0,0,0,0,0,0,0,0,17.83,19.39,13.41,20.18,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,2.99472793217804,2.40094961417018,3.67795099231928,4.12212503378895
Merged-chr17-44831396-3,chr17,44831239,44831547,+,653,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178652, intron 2 of 11)",RMER17C|LTR|ERVK,-16596,NR_073392,12393,Mm.391013,NM_009820,ENSMUSG00000039153,Runx2,AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a,runt related transcription factor 2,protein-coding,10.76,10.57,8.08,9.03,4.24,1.52,9.11,6.93,0,0,0,0,0,0,0,0,19.15,21.67,7.83,27.34,24.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.29740186775642,2.21510972044552,3.79966867826956,4.06158317323235
Merged-chr6-116345346-2,chr6,116345221,116345470,+,643.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001302385, intron 2 of 6)","intron (NM_001302385, intron 2 of 6)",7323,NM_001302383,71779,Mm.27064,NM_027920,ENSMUSG00000025702,March8,1300017E09Rik|MARCH-VIII|Mir,membrane-associated ring finger (C3HC4) 8,protein-coding,2.48,4.49,6.06,8.24,6.26,8.09,7.09,5.36,0,0,0,0,0,0,0,0,11.89,10.26,11.18,15.63,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,2.49576534947494,2.67171304662695,3.00465971764089,4.13994405591337
Merged-chr11-11776051-4,chr11,11775682,11776378,+,601.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,32932,NM_021891,60530,Mm.236114,NM_021891,ENSMUSG00000035455,Fignl1,-,fidgetin-like 1,protein-coding,7.86,15.06,12.79,8.59,13.33,10.11,19.74,11.97,61.5,27.06,50.01,15.22,50.82,26.5,0,14.98,25.76,29.65,15.09,29.3,58.17,31.54,26.97,0,73.1,42.56,38.66,69.8,44.57,93.04,41.81,Equal basal,3.43746087721632,3.58755196385795,4.2120416733286,4.781288548353