Position,Chr,Start,End,Strand,Peak Score,Focus Ratio/Region Size,Annotation,Detailed Annotation,Distance to TSS,Nearest PromoterID,Entrez ID,Nearest Unigene,Nearest Refseq,Nearest Ensembl,Gene Name,Gene Alias,Gene Description,Gene Type,"/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB1_TDT_l20210213_TCATGAGC_CTCTCTAT_S15_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (12086159.065708 Total, normalization factor = 0.83, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB2_TDT_l20210213_CCTGAGAT_TATCCTCT_S16_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (15607187.618682 Total, normalization factor = 0.64, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB3_TDT_l20210213_TAGCGAGT_GTAAGGAG_S17_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (14856462.9031955 Total, normalization factor = 0.67, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB4_TDT_l20210213_GTAGCTCC_ACTGCATA_S18_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (57062336.429763 Total, normalization factor = 0.18, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C571_TDT_l20210213_TACTACGC_AAGGAGTA_S19_L001_trim30 Tag Count in given bp (24759404.449972 Total, normalization factor = 0.40, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C572_TDT_l20210213_AGGCTCCG_CTAAGCCT_S20_L001_trim30 Tag Count in given bp (9892529.4841065 Total, normalization factor = 1.01, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C573_TDT_l20210213_GCAGCGTA_CGTCTAAT_S21_L001_trim30 Tag Count in given bp (9877605.400345 Total, normalization factor = 1.01, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C574_TDT_l20210213_CTGCGCAT_TCTCTCCG_S22_L001_trim30 Tag Count in given bp (15868991.8283925 Total, normalization factor = 0.63, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (2032455.533085 Total, normalization factor = 4.92, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1108485.778179 Total, normalization factor = 9.02, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1099820.8231305 Total, normalization factor = 9.09, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1314360.290132 Total, normalization factor = 7.61, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61A_TDT_l20210213_CTAGTACG_TCGACTAG_S7_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (2066253.53343 Total, normalization factor = 4.84, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61B_TDT_l20210213_TTCTGCCT_TTCTAGCT_S8_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1132152.129812 Total, normalization factor = 8.83, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61C_TDT_l20210213_GCTCAGGA_CCTAGAGT_S9_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1128119.545599 Total, normalization factor = 8.86, effective total = 10000000)","/home/ttroutman/strainsKupffer/tagDirectories/atac/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ATAC_Chow_healthyoung_CB61D_TDT_l20210213_AGGAGTCC_GCGTAAGA_S10_L001_trim30.mm10.bowtie2.sam Tag Count in given bp (1334867.968772 Total, normalization factor = 7.49, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/balbcj_Male_Kupffer_ATAC_LPS2hrFasted_20210331C_TDT_s20210331_TCCTGAGC_CCTAGAGT.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (15139893.235545 Total, normalization factor = 0.66, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/balbcj_Male_Kupffer_ATAC_LPS2hrFasted_20210331D_TDT_s20210331_GGACTCCT_GCGTAAGA.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (8768595.451304 Total, normalization factor = 1.14, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407D_TDT_s20210407_GTAGAGGA_TTATGCGA.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (17891179.421468 Total, normalization factor = 0.56, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407E_TDT_s20210407_GCTCATGA_CTCTCTAT.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (15359311.68934 Total, normalization factor = 0.65, effective total = 10000000)","/home/h1bennet/strains/data/ATAC/LPS_2hours/c57bl6j_Male_Kupffer_ATAC_LPS2hrFasted_20210407F_TDT_s20210407_ATCTCAGG_TATCCTCT.c57bl6j.bowtie2_shifted_from_C57BL6J.sam Tag Count in given bp (13236340.176951 Total, normalization factor = 0.76, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331A_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1268088.564933 Total, normalization factor = 7.89, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331B_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1112505.9464505 Total, normalization factor = 8.99, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407A_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1421150.794425 Total, normalization factor = 7.04, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407B_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (1368022.843378 Total, normalization factor = 7.31, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407C_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam Tag Count in given bp (704828.628238 Total, normalization factor = 14.19, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331A_trim30.mm10.bowtie2.sam Tag Count in given bp (1293346.69289 Total, normalization factor = 7.73, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210331B_trim30.mm10.bowtie2.sam Tag Count in given bp (1146081.7077285 Total, normalization factor = 8.73, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407A_trim30.mm10.bowtie2.sam Tag Count in given bp (1458356.823263 Total, normalization factor = 6.86, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407B_trim30.mm10.bowtie2.sam Tag Count in given bp (1397269.319817 Total, normalization factor = 7.16, effective total = 10000000)","/data/scratch/troutman/20210407_cb6f1j_lps_atac_trimmed/tag_only_muts_CB6F1J_Kupffer_ATAC_LPS_2h_20210407C_trim30.mm10.bowtie2.sam Tag Count in given bp (717605.79936 Total, normalization factor = 13.94, effective total = 10000000)",Basal accessibility,BALBcJ_PBS,C57BL6J_PBS,BALBcJ_LPS,C57BL6J_LPS
Merged-chr9-63971023-1,chr9,63970885,63971162,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_008542, intron 3 of 3)","intron (NM_008542, intron 3 of 3)",51036,NM_008542,17130,Mm.325757,NM_008542,ENSMUSG00000036867,Smad6,Madh6|b2b390Clo,SMAD family member 6,protein-coding,1.24,3.84,2.02,4.38,1.41,1.01,0,0.95,0,0,0,0,0,0,0,0,41.61,37.63,0.56,1.95,0,0,0,0,0,0,0,0,0,0,0,Equal basal,1.7277296715918,0.64548908049628,4.70702683373777,0.710158523816337
Merged-chr11-63052984-4,chr11,63052811,63053158,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8675,NM_027660,71062,Mm.23534,NM_027660,ENSMUSG00000042189,Tekt3,4933407G07Rik,tektin 3,protein-coding,22.75,36.2,27.6,26.9,110.26,68.23,106.81,55.77,0,0,0,0,0,0,0,0,70.67,112.9,55.89,140.63,129.19,0,0,0,0,0,0,0,0,0,0,High basal,4.75255997855923,6.09917900793147,5.84972985316697,6.50939088987437
Merged-chr17-26535924-1,chr17,26535820,26536028,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-25588,NM_026170,67458,Mm.30496,NM_026170,ENSMUSG00000001576,Ergic1,1200007D18Rik|maa-136,endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1,protein-coding,12.82,16.66,15.14,24.1,29.89,45.49,39.48,23.32,0,0,0,7.61,0,26.5,0,7.49,52.18,80.97,17.33,54.04,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.03773006635202,4.84552969550366,5.40041496661938,5.11727956667187
Merged-chr2-35157137-1,chr2,35157006,35157269,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_012018, intron 25 of 43)","intron (NM_012018, intron 25 of 43)",24903,NM_001290635,26920,Mm.231332,NM_012018,ENSMUSG00000057110,Cntrl,6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo,centriolin,protein-coding,1.65,2.24,2.02,2.37,3.03,6.07,4.05,2.52,0,0,0,0,0,0,0,0,21.14,31.93,0.56,9.77,9.82,0,0,0,0,0,0,0,0,0,0,Equal basal,1.504306212519,2.01823862898862,4.12783373238361,2.28353019380758
Merged-chr3-87987029-4,chr3,87986861,87987195,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_007529),TTS (NM_007529),13328,NM_007529,12032,Mm.4598,NM_007529,ENSMUSG00000004892,Bcan,Cspg7,brevican,protein-coding,36.82,42.29,17.16,26.81,52.51,64.19,57.71,30.56,0,0,0,0,0,0,0,0,67.37,118.61,39.68,96.36,121.63,0,0,0,0,0,0,0,0,0,0,Equal basal,4.80880580354735,5.38439816783381,5.85088426312611,6.13879461512238
Merged-chr6-114894347-1,chr6,114894233,114894462,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_001356371, intron 2 of 5)","intron (NM_001356371, intron 2 of 5)",27474,NM_177683,232334,Mm.268357,NM_177683,ENSMUSG00000030315,Vgll4,BC048841|VGL-4,vestigial like family member 4,protein-coding,3.72,7.05,3.37,6.83,9.09,17.69,13.67,15.12,0,0,0,0,0,0,0,0,24.44,42.2,6.71,14.32,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,2.47174619710391,3.58583029810732,4.41818595607404,3.81336586925079
Merged-chr5-103678323-4,chr5,103678171,103678470,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-22588,NM_001163550,74218,Mm.159141,NM_028824,ENSMUSG00000029320,1700016H13Rik,-,RIKEN cDNA 1700016H13 gene,protein-coding,26.48,24.35,16.83,15.07,43.42,26.79,48.59,33.71,0,0,0,0,0,0,0,0,60.11,116.32,27.39,61.2,74.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30850912386803,4.98067697198891,5.75652315005538,5.5146332005777
Merged-chr2-84511712-4,chr2,84511494,84511934,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR28|LTR|ERVL,-4841,NR_046046,672763,Mm.491046,NR_046046,ENSMUSG00000087362,Gm13710,-,predicted gene 13710,ncRNA,40.54,32.36,28.61,19.45,87.24,81.37,105.79,40.02,0,0,0,0,0,0,0,0,89.17,116.32,49.19,107.43,108.79,0,0,0,0,0,0,0,0,0,0,High basal,4.81795514164249,5.95713308909897,6.03573120878162,6.23897446340073
Merged-chr8-46141070-4,chr8,46140899,46141285,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-16946,NM_207213,102141,Mm.267258,NM_207213,ENSMUSG00000038291,Snx25,AI661919|Gm1699|Gm173|Sbbi31,sorting nexin 25,protein-coding,31.44,28.19,40.72,31.02,35.74,48.52,50.11,43.8,0,0,0,0,0,0,0,0,103.7,98.08,26.27,57.29,71.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.9711020643597,5.22637256316967,6.02205011794918,5.44444753743775
Merged-chr2-153558666-4,chr2,153558478,153558831,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28683,NM_001134300,329540,Mm.50600,NM_001001986,ENSMUSG00000061411,Nol4l,4931410H15|8430427H17Rik|AI429157|Gm1636,nucleolar protein 4-like,protein-coding,34.75,66.32,36.01,28.13,61.39,65.2,61.25,32.77,0,0,0,0,0,0,0,0,154.56,195.01,31.86,147.14,133.72,0,0,0,0,0,0,0,0,0,0,Equal basal,5.22567473104508,5.4912020903056,6.79610177478405,6.28164910165681
Merged-chr3-149393585-4,chr3,149393414,149393768,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,118854,NR_040591,381482,Mm.393866,NR_040591,NA,Gm1653,-,predicted gene 1653,ncRNA,39.71,35.24,27.26,40.04,63.01,58.12,50.11,36.55,0,0,0,0,0,0,0,0,106.34,203,46.39,81.38,98.21,0,0,0,0,0,0,0,0,0,0,Equal basal,5.07699144638182,5.42664004868211,6.5579511398726,6.03112006393617
Merged-chr6-29246759-4,chr6,29246600,29246903,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-25737,NM_001190461,69573,Mm.45161,NM_023516,ENSMUSG00000043421,Hilpda,2310016C08Rik|AW049004|Hig2,hypoxia inducible lipid droplet associated,protein-coding,50.06,49.98,57.55,55.64,72.7,65.2,75.42,35.29,0,0,0,0,0,0,0,0,133.42,225.81,34.1,111.33,134.48,0,0,0,0,0,0,0,0,0,0,Equal basal,5.65957225939009,5.65106905660927,6.79588947374928,6.18351852926341
Merged-chr4-88515842-4,chr4,88515687,88516007,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,6947,NM_010510,15977,Mm.1245,NM_010510,ENSMUSG00000048806,Ifnb1,IFN-beta|IFNB|Ifb,"interferon beta 1, fibroblast",protein-coding,23.58,45.17,27.6,35.22,55.53,43.97,41.51,18.59,0,0,0,0,0,0,0,0,90.49,135.71,22.36,79.43,77.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.93843622893251,4.97800486365767,6.15580412307971,5.56172358362196
Merged-chrX-169106389-4,chrX,169106191,169106638,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_109847, intron 1 of 14)","intron (NR_109847, intron 1 of 14)",-6464,NM_001287530,11856,Mm.441810,NM_009707,ENSMUSG00000031355,Arhgap6,AI504284|RhoGAPX-1,Rho GTPase activating protein 6,protein-coding,85.64,54.46,71.35,87.27,69.27,65.71,92.63,37.49,0,0,0,0,0,0,0,0,201.45,262.3,33.54,104.17,115.59,0,0,0,0,0,0,0,0,0,0,Equal basal,6.12040278136554,5.73003744892842,7.1978884914772,6.07220384044491
Merged-chr7-25109527-4,chr7,25109383,25109705,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001163556, intron 5 of 13)","intron (NM_001163556, intron 5 of 13)",-12369,NR_105855,102465968,NA,NR_105855,ENSMUSG00000098441,Mir6537,Gm27808|mmu-mir-6537,microRNA 6537,ncRNA,24.82,28.19,20.87,23.66,26.25,44.98,25.82,20.8,0,0,0,0,0,0,0,0,77.28,101.5,18.44,74.87,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56465918092742,4.60011581381234,5.83745378894274,5.3529872455508
Merged-chr1-45907600-3,chr1,45907426,45907742,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_016917),TTS (NM_016917),18010,NM_016917,53945,Mm.28756,NM_016917,ENSMUSG00000025993,Slc40a1,Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1,"solute carrier family 40 (iron-regulated transporter), member 1",protein-coding,6.62,9.93,4.04,13.67,11.31,5.56,10.12,11.66,0,0,0,0,0,0,0,0,29.72,70.71,5.03,22.79,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.04845965514256,3.09324994694019,4.91287158163622,3.91966635492368
Merged-chr14-120876113-1,chr14,120875971,120876256,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-35081,NM_023579,70572,Mm.221452,NM_023579,ENSMUSG00000030662,Ipo5,1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5,importin 5,protein-coding,4.55,1.92,7.74,5.87,5.05,5.56,8.1,2.84,0,0,0,0,0,0,0,0,29.06,30.79,3.35,8.46,9.82,0,0,0,0,0,0,0,0,0,0,Equal basal,2.36687296779475,2.30634259398276,4.32056572835537,2.77979891066446
Merged-chr13-98912806-4,chr13,98912676,98912990,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178716, intron 1 of 23)","intron (NM_178716, intron 1 of 23)",13551,NM_178716,238799,Mm.173286,NM_178716,ENSMUSG00000009470,Tnpo1,AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN,transportin 1,protein-coding,27.72,28.19,12.12,27.43,33.93,42.96,27.84,15.44,0,0,0,0,0,0,0,0,75.3,142.55,24.03,63.8,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.46293991563659,4.58950368777477,6.06044873247182,5.28750188044279
Merged-chr11-95347059-4,chr11,95346900,95347188,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172543, intron 1 of 7)",B4A|SINE|B4,10026,NM_172543,215512,Mm.262113,NM_172543,ENSMUSG00000038893,Fam117a,5730593F17Rik|AW548096,"family with sequence similarity 117, member A",protein-coding,21.51,22.75,13.8,14.2,28.27,30.33,32.4,14.49,0,0,0,0,0,0,0,0,51.52,71.85,22.92,42.97,46.09,0,0,0,0,0,0,0,0,0,0,Equal basal,4.1129184885651,4.45294476069193,5.30721842152454,5.04313425122274
Merged-chr17-62623402-4,chr17,62623210,62623569,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010109, intron 2 of 3)","intron (NM_010109, intron 2 of 3)",257928,NM_207654,13640,Mm.7978,NM_010109,ENSMUSG00000048915,Efna5,AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS,ephrin A5,protein-coding,70.33,58.31,53.85,57.74,44.63,68.74,77.95,31.51,0,0,0,0,0,0,0,0,134.08,231.51,44.71,98.31,101.24,0,0,0,0,0,0,0,0,0,0,Equal basal,5.82894287543346,5.47322144922318,6.81726449865067,6.11759986433392
Merged-chr7-126941308-4,chr7,126941159,126941466,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172747, intron 2 of 5)","intron (NM_172747, intron 2 of 5)",7847,NM_001347657,233879,Mm.444143,NM_001039645,ENSMUSG00000046378,Asphd1,A830007L07Rik|Gm168,aspartate beta-hydroxylase domain containing 1,protein-coding,23.58,22.11,20.53,22.78,34.94,34.87,45.05,34.97,0,0,0,0,0,0,0,0,80.58,68.43,26.83,88.55,71.77,0,0,0,0,0,0,0,0,0,0,Equal basal,4.42775829820687,4.98004353856382,5.58874465305442,5.66477223143359
Merged-chr6-39003716-1,chr6,39003609,39003823,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_011539, intron 5 of 12)","intron (NM_011539, intron 5 of 12)",63870,NR_040523,69986,Mm.490941,NR_040523,ENSMUSG00000100121,1700025N23Rik,-,RIKEN cDNA 1700025N23 gene,ncRNA,3.31,6.73,4.38,7.89,6.26,6.07,5.06,10.08,0,0,0,0,0,0,0,0,27.08,45.62,4.47,10.42,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,2.53977542373008,2.70693503323071,4.54248170933966,3.19032613128507
Merged-chr18-4315317-4,chr18,4315142,4315507,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,37629,NM_007746,26410,Mm.3275,NM_007746,ENSMUSG00000024235,Map3k8,Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT,mitogen-activated protein kinase kinase kinase 8,protein-coding,43.44,55.42,27.26,25.76,59.98,43.97,34.42,19.22,0,0,0,0,0,0,0,0,108.98,136.85,36.89,74.87,89.9,0,0,0,0,0,0,0,0,0,0,Equal basal,5.10886465799121,4.95190261100861,6.29406366131025,5.84150321192447
Merged-chr16-56729319-4,chr16,56729107,56729506,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172825, intron 15 of 15)",MTB|LTR|ERVL-MaLR,-11856,NM_001357126,21787,Mm.425970,NM_019678,ENSMUSG00000022757,Tfg,AI173908,Trk-fused gene,protein-coding,19.03,20.5,37.36,27.86,39.18,23.25,50.62,30.25,0,0,0,0,0,0,0,0,85.21,88.95,20.68,70.32,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.62049055886316,4.88377580296017,5.81330900868943,5.50780556517136
Merged-chr10-77565990-4,chr10,77565820,77566163,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_008404),TTS (NM_008404),-15664,NM_145925,108705,Mm.28853,NM_145925,ENSMUSG00000009291,Pttg1ip,1810010L20Rik|AI314311|AU018448|C79540|PBF,pituitary tumor-transforming 1 interacting protein,protein-coding,23.17,48.05,19.18,24.1,52.71,67.22,69.35,40.33,0,0,0,0,0,0,0,0,85.21,116.32,32.98,106.12,123.9,0,0,0,0,0,0,0,0,0,0,Equal basal,4.69732597353941,5.56415935225538,6.00344879928642,6.10610484986399
Merged-chr4-133841211-1,chr4,133841076,133841346,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,33520,NM_001285506,20111,Mm.301827,NM_009097,ENSMUSG00000003644,Rps6ka1,Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk,ribosomal protein S6 kinase polypeptide 1,protein-coding,6.62,5.13,2.02,4.47,12.32,4.04,4.05,6.93,46.74,18.04,22.73,76.08,41.14,0,66.48,29.97,24.44,27.37,3.35,8.46,9.07,19.71,71.91,42.22,76.75,42.56,27.06,26.18,0,53.68,20.9,Equal basal,2.30804164285866,2.62355572440262,4.12174054618721,2.7464190178162
Merged-chr16-95902383-4,chr16,95902243,95902530,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_040484, intron 1 of 3)","intron (NR_040484, intron 1 of 3)",-3673,NR_040485,69776,Mm.120470,NR_040484,ENSMUSG00000086899,1600002D24Rik,-,RIKEN cDNA 1600002D24 gene,ncRNA,17.38,44.85,23.22,18.23,53.72,67.73,69.85,28.36,0,0,0,0,0,0,0,0,79.26,96.94,39.68,85.29,67.99,0,0,0,0,0,0,0,0,0,0,Equal basal,4.54704560671416,5.45900980517231,5.82281948429524,5.8057115356383
Merged-chr11-34778413-4,chr11,34778194,34778589,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_033374, intron 1 of 51)","intron (NM_033374, intron 1 of 51)",5514,NM_033374,94176,Mm.380679,NM_033374,ENSMUSG00000020143,Dock2,AI662014|AW122239|CED-5|Hch|MBC,dedicator of cyto-kinesis 2,protein-coding,26.06,33.96,30.29,38.9,37.76,53.58,48.09,31.51,0,0,0,0,0,0,0,0,98.42,141.41,27.95,91.8,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,4.943469058344,5.15259662166033,6.24480682457311,5.72045896861071
Merged-chr5-43081995-4,chr5,43081815,43082160,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-151476,NM_175937,231207,Mm.7233,NM_175937,ENSMUSG00000039782,Cpeb2,A630055H10Rik|Cpe-bp2,cytoplasmic polyadenylation element binding protein 2,protein-coding,25.24,20.82,21.2,37.15,31.1,28.81,36.95,29.93,0,0,0,0,0,0,0,0,81.24,84.39,16.77,45.57,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.61232597630278,4.74933667804304,5.74231185352862,4.97648368561356
Merged-chr5-146777209-4,chr5,146777043,146777375,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011669, intron 1 of 8)","intron (NM_011669, intron 1 of 8)",17747,NM_011669,22217,Mm.167971,NM_011669,ENSMUSG00000029640,Usp12,Ubh1,ubiquitin specific peptidase 12,protein-coding,66.19,44.53,51.16,45.83,69.06,73.79,70.36,48.84,0,0,0,0,0,0,0,0,138.71,187.03,35.21,133.47,144.3,0,0,0,0,0,0,0,0,0,0,Equal basal,5.60985318140064,5.76717130257033,6.6889033099048,6.31853337207946
Merged-chr13-54306194-4,chr13,54305990,54306376,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-65166,NM_009946,12890,Mm.268902,NM_009946,ENSMUSG00000025867,Cplx2,921-L|AI413745|AW492120|Gm34843,complexin 2,protein-coding,56.68,56.38,39.04,18.58,73.91,113.72,123.01,51.36,0,0,0,0,0,0,0,0,130.78,123.17,77.13,175.79,171.5,0,0,0,0,0,0,0,0,0,0,Equal basal,5.22918243043524,6.16086646626148,6.34911164117311,6.90391199948641
Merged-chr19-24284370-8,chr19,24284179,24284578,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-3792,NM_008044,14297,Mm.7319,NM_008044,ENSMUSG00000059363,Fxn,FA|FARR|Frda|X25,frataxin,protein-coding,23.17,47.73,41.06,38.12,59.78,49.53,85.55,35.29,241.09,148.85,186.39,235.86,162.13,291.48,296.95,235.98,95.77,150.54,36.89,98.31,84.62,851.68,750.56,510.15,654.23,560.42,668.81,732.93,414.85,615.49,682.83,Equal basal,5.12413309485993,5.53241978160377,6.27000218465856,5.94179204990925
Merged-chr12-85670291-4,chr12,85670168,85670425,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-16424,NM_016767,53314,Mm.6672,NM_016767,ENSMUSG00000034266,Batf,B-ATF|SFA-2,"basic leucine zipper transcription factor, ATF-like",protein-coding,24.41,38.44,29.28,22.52,49.07,30.83,45.56,17.96,0,0,0,0,0,0,0,0,82.56,92.38,27.39,50.78,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.75617304347128,4.82909433785505,5.81764996110978,5.34876695754905
Merged-chr11-21082899-4,chr11,21082743,21083047,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8429,NM_023324,67245,Mm.28957,NM_023324,ENSMUSG00000020134,Peli1,2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e,pellino 1,protein-coding,73.64,95.47,30.96,45.21,84.82,118.27,116.42,51.67,0,0,0,0,0,0,0,0,153.24,216.68,69.87,156.26,176.03,0,0,0,0,0,0,0,0,0,0,Equal basal,5.73949508709516,6.21151679511125,6.86530702251915,6.8130478275668
Merged-chr2-68430812-4,chr2,68430551,68430996,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_016866, intron 1 of 17)","intron (NM_016866, intron 1 of 17)",41208,NM_016866,53416,Mm.198414,NM_016866,ENSMUSG00000027030,Stk39,AW227544|AW556857|DCHT|RF005|Rnl5|SPAK,serine/threonine kinase 39,protein-coding,33.92,76.89,54.52,39.78,79.36,78.85,49.1,39.07,0,0,0,0,0,0,0,0,147.95,198.44,46.39,128.26,156.39,0,0,0,0,0,0,0,0,0,0,Equal basal,5.54346857017507,5.63486872829393,6.77731396745454,6.46814937377933
Merged-chr1-43466115-4,chr1,43465979,43466277,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010879, intron 1 of 4)","intron (NM_010879, intron 1 of 4)",20377,NM_010879,17974,Mm.389903,NM_010879,ENSMUSG00000066877,Nck2,4833426I10Rik|Grb4|NCKbeta|Nck-2,non-catalytic region of tyrosine kinase adaptor protein 2,protein-coding,29.79,19.54,11.11,25.76,31.1,24.77,28.35,26.15,0,0,0,0,0,0,0,0,67.37,71.85,19,60.55,57.42,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30183128281761,4.56183747893757,5.49628333984221,5.21967466123928
Merged-chr16-10496183-4,chr16,10495976,10496442,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001302619, intron 2 of 19)","intron (NM_001302619, intron 2 of 19)",6428,NM_001243761,12265,Mm.249560,NM_007575,ENSMUSG00000022504,Ciita,C2ta|EG669998|Gm9475|Mhc2ta,class II transactivator,protein-coding,38.47,51.9,27.6,32.33,37.36,38.92,38.98,31.19,0,0,0,0,0,0,0,0,101.72,128.87,28.51,60.55,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,5.13142601531945,4.9507560625626,6.2021642095255,5.59978578830094
Merged-chr1-13423730-2,chr1,13423604,13423874,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-49656,NM_008678,17978,Mm.2537,NM_008678,ENSMUSG00000005886,Ncoa2,D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75,nuclear receptor coactivator 2,protein-coding,1.24,0,0,4.38,0.81,1.01,2.02,1.58,9.84,27.06,0,0,0,0,0,11.24,29.06,36.49,0.56,1.95,3.78,410.07,179.77,168.88,270.46,340.51,34.79,52.35,89.14,57.25,83.61,Equal basal,0.794047774639772,1.0180163889756,4.43687455202744,1.32805427966386
Merged-chr12-98283685-4,chr12,98283446,98283921,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,15048,NM_008152,14744,Mm.378924,NM_008152,ENSMUSG00000021886,Gpr65,Dig1|Gpcr25|TDAG8,G-protein coupled receptor 65,protein-coding,51.3,51.58,48.8,40.74,57.35,58.12,49.1,36.23,0,0,0,0,0,0,0,0,109.64,184.75,34.65,86.59,98.97,0,0,0,0,0,0,0,0,0,0,Equal basal,5.51111997884081,5.38010674859751,6.51241741259992,5.9263322667146
Merged-chr13-67772512-4,chr13,67772333,67772654,+,1000,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-7200,NM_028402,72958,Mm.53849,NM_028402,ENSMUSG00000090659,Zfp493,2900054J07Rik|Rslcan12,zinc finger protein 493,protein-coding,0.41,0,1.35,1.31,68.46,57.62,86.05,58.6,24.6,27.06,27.28,7.61,140.35,207.57,257.06,213.5,3.96,17.11,55.89,65.76,98.97,55.2,53.93,38.7,62.13,106.41,645.61,488.62,205.71,422.25,717.66,High basal,0.595697448508103,5.81615294963669,2.67274658058119,6.02240925125461
Merged-chr4-43420025-4,chr4,43419855,43420228,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001037709, intron 2 of 11)","intron (NM_001037709, intron 2 of 11)",9093,NM_177377,329831,Mm.454466,NM_177377,ENSMUSG00000042788,Fam166b,4833436C18Rik,"family with sequence similarity 166, member B",protein-coding,30.61,40.37,30.63,48.81,51.09,38.92,37.46,36.86,0,0,0,0,0,0,0,0,134.74,163.08,27.39,76.18,109.55,0,0,0,0,0,0,0,0,0,0,Equal basal,5.14449455933003,5.11081528514492,6.57037043330704,5.80328497717646
Merged-chr3-144716066-4,chr3,144715809,144716279,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001282037, intron 1 of 10)","intron (NM_001282037, intron 1 of 10)",4291,NM_001282042,54673,Mm.271775,NM_019464,ENSMUSG00000037062,Sh3glb1,AA409932|AI314629|AU015566|Bif-1|mKIAA0491,SH3-domain GRB2-like B1 (endophilin),protein-coding,27.3,18.9,21.54,32.33,37.97,32.35,31.38,27.73,0,0,0,0,0,0,0,0,77.94,134.57,21.8,55.34,74.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.57314945655109,4.7902346369552,6.04384688681517,5.36070737762973
Merged-chr17-10383280-1,chr17,10383180,10383380,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,MLT1B|LTR|ERVL-MaLR,58678,NR_045461,76634,Mm.491052,NR_045461,ENSMUSG00000099384,1700110C19Rik,-,RIKEN cDNA 1700110C19 gene,ncRNA,13.65,24.99,14.14,16.65,18.98,12.13,27.33,11.66,0,0,0,0,0,0,0,0,58.79,96.94,12.3,31.9,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.05624367108232,3.8657064092416,5.61153294397933,4.29164480460256
Merged-chr7-79780881-7,chr7,79780355,79781266,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001037927, intron 17 of 17)","intron (NM_001037927, intron 17 of 17)",12780,NM_008588,17292,Mm.1404,NM_008588,ENSMUSG00000030544,Mesp1,bHLHc5,mesoderm posterior 1,protein-coding,66.61,64.07,48.13,49.59,93.5,105.13,63.27,47.26,0,0,0,0,0,0,0,0,147.95,209.84,46.39,135.42,137.5,0,0,0,0,0,0,0,0,0,0,Equal basal,5.74528459094488,5.95277135632448,6.81727095565755,6.43272474020417
Merged-chr3-31090178-4,chr3,31090032,31090314,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4885,NM_001039090,20482,Mm.15406,NM_011386,ENSMUSG00000027660,Skil,Skir|SnoN|sno,SKI-like,protein-coding,24.41,32.68,16.83,25.85,54.32,65.2,72.39,40.96,0,0,0,0,0,0,0,0,81.9,152.82,26.27,93.75,110.3,0,0,0,0,0,0,0,0,0,0,High basal,4.55991828348724,5.58465169502028,6.16960143362323,5.88533792788546
Merged-chr18-46434638-4,chr18,46434475,46434813,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTD|LTR|ERVL-MaLR,31172,NR_045438,72076,Mm.82766,NM_028086,NA,Mospd4,2010013H21Rik,motile sperm domain containing 4,pseudo,31.44,16.02,13.46,19.28,31.3,38.92,26.32,10.08,0,0,0,0,0,0,0,0,70.01,99.22,16.21,62.5,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.23363112754259,4.37530258552127,5.75143902873833,5.18523195705814
Merged-chr6-125581445-4,chr6,125581285,125581602,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011708, intron 6 of 51)",L1_Mur3|LINE|L1,28495,NM_011708,22371,Mm.22339,NM_011708,ENSMUSG00000001930,Vwf,6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD,Von Willebrand factor,protein-coding,33.92,54.46,46.11,25.76,75.32,83.9,94.66,41.59,0,0,0,0,0,0,0,0,109.64,127.73,36.89,131.52,139.01,0,0,0,0,0,0,0,0,0,0,Equal basal,5.20767509180719,5.8938158457374,6.2492681270805,6.31567127500358
Merged-chr6-54949211-2,chr6,54949090,54949328,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001171007, intron 2 of 11)","intron (NM_001171007, intron 2 of 11)",22452,NM_001171007,107607,Mm.28498,NM_172729,ENSMUSG00000038058,Nod1,C230079P11|Card4|F830007N14Rik|Nlrc1,nucleotide-binding oligomerization domain containing 1,protein-coding,12,15.06,7.74,6.75,12.12,16.17,14.17,5.67,0,0,0,0,0,0,0,0,44.91,68.43,5.59,35.16,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.31985709470223,3.36800850349233,5.1766996980765,4.08381961895794
Merged-chr9-38820243-4,chr9,38820063,38820425,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15|LTR|ERVL,4836,NM_146781,258777,Mm.223208,NM_146781,ENSMUSG00000043911,Olfr922,MOR161-3,olfactory receptor 922,protein-coding,24.41,42.29,32.65,45.3,43.22,44.98,47.58,33.08,0,0,0,0,0,0,0,0,112.95,137.99,34.65,66.41,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,5.07266878595981,5.14984063729853,6.3254208594262,5.55625635445302
Merged-chr2-165043226-4,chr2,165043009,165043393,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8422,NM_144892,228869,Mm.233080,NM_144892,ENSMUSG00000039804,Ncoa5,CIA,nuclear receptor coactivator 5,protein-coding,17.38,46.45,19.52,25.67,81.99,63.18,64.29,37.49,0,0,0,0,0,0,0,0,78.6,128.87,40.8,130.21,122.39,0,0,0,0,0,0,0,0,0,0,Equal basal,4.61875503483644,5.64400477308681,6.01901746523146,6.29795773842078
Merged-chr16-91358729-2,chr16,91358487,91359038,+,1000,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLT1B|LTR|ERVL-MaLR,-14021,NM_010509,15976,Mm.6834,NM_010509,ENSMUSG00000022971,Ifnar2,AI747302|Ifnar-2,interferon (alpha and beta) receptor 2,protein-coding,0.83,2.24,2.36,1.14,34.53,37.91,51.13,30.88,0,0,0,0,0,0,0,0,10.57,10.26,24.03,80.08,66.48,0,0,0,0,0,0,0,0,0,0,High basal,1.21025807472611,5.00967975405665,2.9290244155341,5.52971967361694
Merged-chr8-73293832-4,chr8,73293701,73293997,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010687, intron 1 of 14)",MTD|LTR|ERVL-MaLR,59691,NM_001317391,16795,Mm.324371,NM_010687,ENSMUSG00000004383,Large1,BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd,LARGE xylosyl- and glucuronyltransferase 1,protein-coding,33.92,46.77,29.28,26.46,62.6,40.94,45.05,21.74,0,0,0,0,0,0,0,0,81.9,143.69,38.01,70.97,97.46,0,0,0,0,0,0,0,0,0,0,Equal basal,5.00232607297792,5.07566377397647,6.12572939062641,5.86849340604226
Merged-chr7-84143313-4,chr7,84143113,84143564,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133722, intron 1 of 2)","intron (NM_133722, intron 1 of 2)",8555,NM_133722,70178,Mm.23914,NM_133722,ENSMUSG00000038459,Abhd17c,2210412D01Rik|AL023007|Fam108c|Fam108c1,abhydrolase domain containing 17C,protein-coding,25.65,27.23,25.24,41.18,36.75,32.35,48.09,33.08,0,0,0,0,0,0,0,0,95.11,120.89,28.51,65.76,101.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.81448726652673,4.98196671311611,6.10893060960886,5.71519851819336
Merged-chr5-125189054-4,chr5,125188869,125189211,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLT2B4|LTR|ERVL,-9826,NM_001253904,20602,Mm.278646,NM_011424,ENSMUSG00000029478,Ncor2,N-CoR|SMRT|SMRTe,nuclear receptor co-repressor 2,protein-coding,46.33,40.05,30.63,36.63,43.42,33.86,33.92,38.12,0,0,0,0,0,0,0,0,97.09,143.69,20.12,71.62,82.35,0,0,0,0,0,0,0,0,0,0,Equal basal,5.18362864348238,4.97654608630308,6.24659258878207,5.49514802369011
Merged-chr5-28037825-4,chr5,28037653,28037993,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-33589,NM_153526,231070,Mm.30221,NM_153526,ENSMUSG00000045294,Insig1,1810013C12Rik|Insig-1,insulin induced gene 1,protein-coding,45.92,55.74,62.26,44.69,55.94,66.72,60.74,51.36,0,0,0,0,0,0,0,0,107.66,223.52,31.3,77.48,89.9,0,0,0,0,0,0,0,0,0,0,Equal basal,5.61865140124445,5.62432755747119,6.63564940168713,5.7802989898586
Merged-chr6-49013197-4,chr6,49013028,49013343,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13569,NR_126454,75347,Mm.207324,NR_126454,ENSMUSG00000107656,4930563H07Rik,-,RIKEN cDNA 4930563H07 gene,ncRNA,22.34,37.8,31.64,27.69,59.78,36.39,40.5,24.89,0,0,0,0,0,0,0,0,93.13,143.69,24.59,95.71,114.08,0,0,0,0,0,0,0,0,0,0,Equal basal,4.82967881603318,5.03685616545761,6.21696263923282,5.88026252189873
Merged-chr17-70985717-4,chr17,70985525,70985865,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_023402, intron 1 of 3)","intron (NM_023402, intron 1 of 3)",4821,NM_023402,67938,Mm.261329,NM_023402,ENSMUSG00000034868,Myl12b,1500001M02Rik|C77744|Mylc2b|RLC-B,"myosin, light chain 12B, regulatory",protein-coding,26.89,25.95,21.2,24.71,33.12,28.3,44.04,23,0,0,0,0,0,0,0,0,60.77,86.67,20.12,62.5,77.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56905348328325,4.74007616978922,5.55572958475906,5.40421312831103
Merged-chr19-29239707-4,chr19,29239557,29239892,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MLT1O|LTR|ERVL-MaLR,-12079,NM_001048177,16452,Mm.275839,NM_008413,ENSMUSG00000024789,Jak2,Fd17,Janus kinase 2,protein-coding,36.41,53.5,25.24,25.76,66.64,62.67,70.87,24.26,0,0,0,0,0,0,0,0,95.11,125.45,31.3,85.94,99.73,0,0,0,0,0,0,0,0,0,0,Equal basal,5.01061965259911,5.45382417954753,6.13526557304882,5.87846748136377
Merged-chr6-42419630-4,chr6,42419477,42419793,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,14106,NM_199159,387512,Mm.377919,NM_199159,ENSMUSG00000056203,Tas2r135,Tas2r35|mt2r38,"taste receptor, type 2, member 135",protein-coding,52.54,36.52,25.24,22.52,36.96,65.71,49.61,23,0,0,0,0,0,0,0,0,91.15,128.87,33.54,85.94,93.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.95697163626142,5.11721707486432,6.1241531084554,5.88129848553898
Merged-chr15-58749279-4,chr15,58749129,58749433,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,74146,NM_175212,74868,Mm.293754,NM_175212,ENSMUSG00000062373,Tmem65,2610029O13Rik|4930438D12Rik,transmembrane protein 65,protein-coding,45.92,21.78,25.24,35.58,38.37,29.32,36.45,33.08,0,0,0,0,0,0,0,0,100.4,145.98,22.92,78.13,80.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.89055865851045,4.86991503236463,6.28160786030452,5.58801361835739
Merged-chr19-55312038-4,chr19,55311862,55312196,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025883, intron 3 of 10)","intron (NM_025883, intron 3 of 10)",4007,NM_001360595,66980,Mm.386789,NM_025883,ENSMUSG00000024982,Zdhhc6,2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6,"zinc finger, DHHC domain containing 6",protein-coding,17.79,34.6,20.87,27.78,38.57,25.78,47.08,41.59,0,0,0,0,0,0,0,0,92.47,127.73,29.62,84.64,78.57,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56832031792674,4.98791429307471,6.12805512941554,5.73256837439799
Merged-chr17-65931177-4,chr17,65931025,65931316,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_023053, intron 3 of 4)","intron (NM_023053, intron 3 of 4)",20017,NM_023053,65960,Mm.10153,NM_023053,ENSMUSG00000024098,Twsg1,1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg,twisted gastrulation BMP signaling modulator 1,protein-coding,25.24,26.27,22.21,30.58,38.17,42.46,55.18,42.54,14.76,0,0,7.61,4.84,26.5,0,11.24,77.28,92.38,38.57,72.27,88.39,0,0,7.04,29.24,42.56,27.06,8.73,0,28.63,0,Equal basal,4.64991622778567,5.22612974172056,5.77075153891866,5.8377342188149
Merged-chr12-99902643-4,chr12,99902421,99902864,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028354, intron 6 of 15)","intron (NM_028354, intron 6 of 15)",18127,NM_028354,104884,Mm.312323,NM_028354,ENSMUSG00000021177,Tdp1,2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1,tyrosyl-DNA phosphodiesterase 1,protein-coding,28.55,31.08,30.29,35.22,38.17,35.89,29.36,26.78,0,0,0,0,0,0,0,0,76.62,117.46,18.44,58.6,72.53,0,0,0,0,0,0,0,0,0,0,Equal basal,4.90610576201762,4.78227039133973,5.93504543693782,5.30030719274632
Merged-chr2-166757459-2,chr2,166757308,166757646,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-36290,NM_023815,76367,Mm.330796,NM_023815,ENSMUSG00000042854,Trp53rkb,2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p,transformation related protein 53 regulating kinase B,protein-coding,9.52,8.97,5.72,6.83,17.57,10.61,7.59,6.93,0,0,0,0,0,0,0,0,27.74,42.2,8.38,18.88,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,2.98746655436836,3.17780845854923,4.50500806635731,3.98818392666311
Merged-chr11-21540249-4,chr11,21540091,21540413,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTC|LTR|ERVL-MaLR,-29072,NR_028259,237694,Mm.72926,NM_172792,ENSMUSG00000078962,4932414J04Rik,-,RIKEN cDNA 4932414J04 gene,ncRNA,25.24,28.51,17.84,28.3,20.8,27.29,42.01,27.73,0,0,0,0,0,0,0,0,71.33,77.55,23.48,61.2,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56531595385956,4.6176353215734,5.59050352132567,5.16339552962838
Merged-chr8-108387736-1,chr8,108387624,108387849,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,196941,NR_077224,109215,Mm.65282,NR_077224,ENSMUSG00000110613,Lncbate1,3010033K07Rik|Lnc-BATE1,brown adipose tissue enriched long non-coding RNA 1,ncRNA,6.21,4.16,4.04,1.14,6.66,4.55,4.05,0.95,0,0,0,0,0,0,0,0,23.78,52.46,1.68,14.97,6.8,0,0,0,0,0,0,0,0,0,0,Equal basal,2.0286943553771,1.84057605796267,4.55075429798267,2.619945293613
Merged-chr14-31597663-4,chr14,31597531,31597818,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-20291,NM_009937,382864,Mm.239821,NM_009937,ENSMUSG00000057606,Colq,A130034K24Rik,collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase,protein-coding,23.58,46.45,30.63,19.45,85.42,93.5,87.57,42.85,0,0,0,0,0,0,0,0,122.19,193.87,64.28,143.24,139.01,0,0,0,0,0,0,0,0,0,0,High basal,4.77500875887129,5.95796803257837,6.62410898612948,6.61940302914385
Merged-chrX-95968804-4,chrX,95968652,95968971,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER17C|LTR|ERVK,-11837,NM_152822,76130,Mm.274318,NM_152822,ENSMUSG00000057421,Las1l,1810030A06Rik|5830482G23Rik,LAS1-like (S. cerevisiae),protein-coding,29.79,22.75,13.8,16.82,37.36,36.39,65.81,31.19,0,0,0,0,0,0,0,0,55.48,68.43,21.8,50.13,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,4.28270544049717,5.11992221396429,5.32501471361402,5.03517846204079
Merged-chr15-64102122-5,chr15,64101978,64102314,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001276461, intron 25 of 28)","intron (NM_001276461, intron 25 of 28)",-41698,NM_001360037,223601,Mm.246108,NM_144846,ENSMUSG00000022378,Fam49b,0910001A06Rik|AW122079,"family with sequence similarity 49, member B",protein-coding,38.89,38.76,37.02,39.69,6.66,7.58,6.58,5.67,167.29,180.43,113.65,258.68,41.14,26.5,26.59,89.9,106.34,124.31,2.24,9.11,19.64,895.05,804.49,344.79,807.74,801.61,204.89,161.42,34.29,186.08,83.61,Low basal,5.20837848175466,2.64028027865358,6.20817592235082,2.95809321211991
Merged-chr17-27008509-4,chr17,27008368,27008657,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER20A|LTR|ERVK,-9523,NM_001251881,70772,Mm.440437,NM_027544,ENSMUSG00000048731,Ggnbp1,0610031G08Rik|mdf,gametogenetin binding protein 1,protein-coding,25.24,25.95,24.57,25.67,26.25,19.71,39.99,21.43,0,0,0,0,0,0,0,0,63.41,104.92,20.12,52.74,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.61053204502094,4.47308553352128,5.72102358284672,5.1559275809727
Merged-chr12-38929151-4,chr12,38928915,38929303,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,145398,NM_001163154,14009,Mm.4866,NM_007960,ENSMUSG00000004151,Etv1,ER81|Etsrp81,ets variant 1,protein-coding,41.37,31.08,47.45,46.18,35.74,40.94,48.59,31.19,0,0,0,0,0,0,0,0,119.55,159.66,35.21,58.6,94.44,0,0,0,0,0,0,0,0,0,0,Equal basal,5.2906508493446,5.03471339657692,6.46988492812067,5.72730716255819
Merged-chr16-50366739-4,chr16,50366449,50366962,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027444, intron 2 of 16)","intron (NM_027444, intron 2 of 16)",65684,NM_027444,70508,Mm.28940,NM_027444,ENSMUSG00000022641,Bbx,5530401J07Rik|5730403O13Rik,bobby sox HMG box containing,protein-coding,25.65,36.2,36.35,43.9,50.69,41.95,33.41,21.11,0,0,0,0,0,0,0,0,87.19,137.99,24.59,63.8,64.22,0,0,0,0,0,0,0,0,0,0,Equal basal,5.06837257216883,4.89822858564541,6.14126271726278,5.41686681641056
Merged-chr1-23918216-1,chr1,23918061,23918372,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_001357395, intron 1 of 10)","intron (NM_001357395, intron 1 of 10)",4165,NM_001357395,98366,Mm.329963,NM_028534,ENSMUSG00000026155,Smap1,1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175,small ArfGAP 1,protein-coding,1.65,2.56,3.03,3.42,3.23,1.01,8.1,1.89,0,0,0,0,12.1,0,0,0,23.12,39.92,2.24,6.51,11.33,27.6,85.39,35.18,29.24,113.5,19.33,26.18,30.86,17.89,34.84,Equal basal,1.74486165922556,1.74891930364083,4.34190118595737,2.57921920864988
Merged-chr1-87637664-4,chr1,87637499,87637809,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001110192, intron 2 of 26)",MLT1M|LTR|ERVL-MaLR,17342,NM_010566,16331,Mm.15105,NM_010566,ENSMUSG00000026288,Inpp5d,SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP,inositol polyphosphate-5-phosphatase D,protein-coding,43.02,47.09,48.13,41.71,62.4,89.46,89.6,51.36,0,0,0,0,0,0,0,0,154.56,181.33,72.1,111.33,105.77,0,0,0,0,0,0,0,0,0,0,Equal basal,5.42093341253775,5.90060726511599,6.74411435618414,6.42428984704196
Merged-chr8-40991920-1,chr8,40991810,40992031,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"3' UTR (NM_001286413, exon 14 of 14)","3' UTR (NM_001286413, exon 14 of 14)",-25548,NR_015457,78849,Mm.440930,NR_015457,ENSMUSG00000084960,B430010I23Rik,-,RIKEN cDNA B430010I23 gene,ncRNA,0,0.32,1.35,1.05,3.03,11.62,5.57,0,0,0,0,0,0,0,0,0,35.67,46.76,0.56,5.21,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,0.566746574697111,1.79283579394215,4.74981409192172,1.95991346123045
Merged-chr8-8143170-9,chr8,8142915,8143437,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,517597,NM_010111,13642,Mm.209813,NM_010111,ENSMUSG00000001300,Efnb2,ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1,ephrin B2,protein-coding,47.58,63.75,26.25,27.78,142.98,129.9,159.45,77.19,238.63,428.51,336.42,258.68,365.4,476.97,549.59,490.69,114.27,116.32,76.57,134.12,163.19,867.45,880.89,503.11,815.04,759.05,1418.8,1588.02,767.99,1298.96,1059.08,High basal,5.20720001067943,6.6820341371168,6.21221579093346,6.74777940233225
Merged-chr2-127323132-4,chr2,127322973,127323304,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13021,NM_010090,13537,Mm.4729,NM_010090,ENSMUSG00000027368,Dusp2,PAC1,dual specificity phosphatase 2,protein-coding,23.58,39.4,32.31,16.04,63.81,69.24,71.37,32.77,0,0,0,0,0,0,0,0,138.05,177.91,42.48,121.75,147.32,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6717599147864,5.58073765461609,6.64977153766306,6.37322128946097
Merged-chr11-51915371-1,chr11,51915223,51915520,+,1000,.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ID_B1|SINE|B4,-52260,NM_029976,52626,Mm.289456,NM_029976,ENSMUSG00000020392,Cdkn2aipnl,A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520,CDKN2A interacting protein N-terminal like,protein-coding,5.38,8.33,5.72,7.1,13.73,14.66,7.09,13.23,0,0,0,0,0,0,0,0,32.36,79.83,6.71,25.39,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,2.78465832134668,3.42247676315264,5.05717485229313,4.09197265587884
Merged-chr1-181232481-4,chr1,181232305,181232614,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-20481,NM_145514,226757,Mm.289082,NM_145514,ENSMUSG00000038733,Wdr26,1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7,WD repeat domain 26,protein-coding,26.48,22.75,31.64,25.94,24.03,45.99,29.36,21.74,0,0,0,0,0,0,0,0,66.05,98.08,25.15,58.6,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6845573138684,4.63591775613463,5.70205395983539,5.3760921694958
Merged-chr9-21041570-2,chr9,21041373,21041716,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9216,NR_035438,100316681,NA,NR_035438,ENSMUSG00000084663,Mir1900,Mirn1900|mmu-mir-1900,microRNA 1900,ncRNA,8.69,4.81,6.06,7.45,9.29,10.61,7.09,11.34,0,0,0,0,0,0,0,0,35.67,39.92,3.35,24.74,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,2.8059482329076,3.13421137186894,4.6402457678143,3.72409231074835
Merged-chr16-36720390-4,chr16,36720199,36720579,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001285791, intron 5 of 6)","intron (NM_001285791, intron 5 of 6)",26411,NM_001285791,106347,Mm.17807,NM_134109,ENSMUSG00000022900,Ildr1,AU041483|AU044638,immunoglobulin-like domain containing receptor 1,protein-coding,33.51,27.23,36.68,29.44,25.65,26.28,54.16,25.84,0,0,0,0,0,0,0,0,73.32,124.31,22.92,58.6,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.91762429090862,4.74188081617345,5.94408102675231,5.36546847388205
Merged-chr12-110822542-4,chr12,110822392,110822701,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011973, intron 4 of 11)","intron (NM_011973, intron 4 of 11)",18393,NM_011973,26448,Mm.140948,NM_011973,ENSMUSG00000056458,Mok,RAGE1|Rage|Stk30,MOK protein kinase,protein-coding,40.96,30.76,22.89,42.41,38.98,29.32,54.16,37.81,0,0,0,0,0,0,0,0,105.02,169.92,29.06,81.38,100.48,0,0,0,0,0,0,0,0,0,0,Equal basal,5.0013426801891,5.05885789010231,6.42200009169203,5.82144816207104
Merged-chr12-102394608-4,chr12,102394440,102394807,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011175, intron 13 of 13)","intron (NM_011175, intron 13 of 13)",45190,NM_011175,19141,Mm.17185,NM_011175,ENSMUSG00000021190,Lgmn,AEP|AI746452|AU022324|Prsc1,legumain,protein-coding,40.54,18.9,24.9,50.3,39.78,34.37,56.19,40.96,0,0,0,0,0,0,0,0,143.33,169.92,32.42,123.05,101.99,0,0,0,0,0,0,0,0,0,0,Equal basal,4.91759537896296,5.16254606054282,6.64382626768106,6.07602520032227
Merged-chr2-136921138-4,chr2,136920935,136921388,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355671, intron 2 of 6)","intron (NM_001355671, intron 2 of 6)",21810,NM_001038641,74243,Mm.330612,NM_028201,ENSMUSG00000027281,Slx4ip,2210009G21Rik|2410004I22Rik|C85661|Slxip,SLX4 interacting protein,protein-coding,50.06,56.06,53.85,62.48,36.35,70.26,93.65,36.55,0,0,0,0,0,0,0,0,168.43,183.61,45.83,119.15,124.66,0,0,0,0,0,0,0,0,0,0,Equal basal,5.7177304504077,5.52352018547314,6.81451112284439,6.31940116997984
Merged-chr8-60870999-4,chr8,60870845,60871147,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-19397,NM_028299,72612,Mm.25263,NM_028299,ENSMUSG00000038005,Hpf1,2700029M09Rik|C230006B22Rik|C4orf27,histone PARylation factor 1,protein-coding,20.68,25.95,19.52,36.71,21,29.32,55.18,17.96,0,0,0,0,0,0,0,0,73.32,111.76,25.71,48.83,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.59827802865102,4.5888212373796,5.86849770347944,5.03556214555823
Merged-chr2-117304571-1,chr2,117304454,117304688,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_011246, intron 3 of 16)","intron (NM_011246, intron 3 of 16)",38306,NM_011246,19419,Mm.42150,NM_011246,ENSMUSG00000027347,Rasgrp1,Rasgrp|calDAG-GEFII,RAS guanyl releasing protein 1,protein-coding,7.45,5.45,2.36,4.91,18.17,11.62,18.73,7.25,0,0,0,0,0,0,0,0,22.46,36.49,9.5,41.02,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,2.37804591417229,3.52461431558977,4.26045518870213,4.34879989112434
Merged-chr9-56104456-4,chr9,56104258,56104619,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011193, intron 1 of 14)","intron (NM_011193, intron 1 of 14)",14462,NM_011193,19200,Mm.2534,NM_011193,ENSMUSG00000032322,Pstpip1,CD2BP1|def-2,proline-serine-threonine phosphatase-interacting protein 1,protein-coding,46.33,70.48,43.08,39.69,63.41,79.86,78.97,42.85,0,0,0,0,0,0,0,0,124.18,187.03,36.33,153,147.32,0,0,0,0,0,0,0,0,0,0,Equal basal,5.53707857219006,5.7644213108257,6.60990705090205,6.40820748797532
Merged-chr1-55215626-4,chr1,55215491,55215780,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028713, intron 1 of 8)","intron (NM_028713, intron 1 of 8)",11147,NM_001356288,74013,Mm.292050,NM_028713,ENSMUSG00000025978,Rftn2,2700010E02Rik|3222401M22Rik,raftlin family member 2,protein-coding,40.13,40.69,47.79,41.27,48.47,67.22,103.26,55.14,0,0,0,0,0,0,0,0,105.02,157.38,67.63,103.52,93.68,0,0,0,0,0,0,0,0,0,0,Equal basal,5.33661500977632,5.78834563717771,6.36728005652551,6.30172886940409
Merged-chr6-140811128-4,chr6,140810981,140811291,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,184251,NM_001309436,11569,Mm.86453,NM_009637,ENSMUSG00000030232,Aebp2,AU023766|B230313N05Rik,AE binding protein 2,protein-coding,19.86,21.78,28.27,35.4,22.42,22.74,37.96,26.78,0,0,0,0,0,0,0,0,105.02,131.15,17.89,69.01,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.64482973862799,4.5209706496075,6.23739119773781,5.22792774285691
Merged-chr3-127948524-1,chr3,127948413,127948636,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NR_040552, intron 4 of 4)","intron (NR_040552, intron 4 of 4)",32353,NR_040552,329753,Mm.119720,NR_040552,ENSMUSG00000104763,9830132P13Rik,9830132P13,RIKEN cDNA 9830132P13 gene,ncRNA,3.31,3.2,3.03,6.66,6.06,4.55,5.06,1.58,7.38,0,0,0,0,0,0,0,29.72,58.16,1.68,11.72,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.17503742568377,2.00526782808447,4.77583540781654,2.59376160282513
Merged-chr8-77443349-4,chr8,77443177,77443505,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030113, intron 3 of 22)","intron (NM_030113, intron 3 of 22)",-73715,NR_028125,70345,Mm.411813,NR_028125,ENSMUSG00000097882,0610038B21Rik,-,RIKEN cDNA 0610038B21 gene,ncRNA,61.64,49.66,55.53,38.12,84.01,76.83,84.03,47.26,0,0,0,0,0,0,0,0,123.51,190.45,47.51,147.14,143.54,0,0,0,0,0,0,0,0,0,0,Equal basal,5.5827803431327,5.90698603063919,6.61905500476466,6.50401862708226
Merged-chr17-65604515-4,chr17,65604333,65604682,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355402, intron 1 of 6)",MTE2b|LTR|ERVL-MaLR,9048,NM_001355402,30960,Mm.266767,NM_013933,ENSMUSG00000024091,Vapa,33kDa|VAP33,"vesicle-associated membrane protein, associated protein A",protein-coding,37.23,26.59,15.14,21.56,29.69,39.42,36.45,30.25,0,0,0,0,0,0,0,0,62.09,102.64,28.51,60.55,55.91,0,0,0,0,0,0,0,0,0,0,Equal basal,4.5319293627068,4.85358790236696,5.69057967059529,5.39624376903161
Merged-chr2-3752498-4,chr2,3752349,3752702,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025626, intron 1 of 3)","intron (NM_025626, intron 1 of 3)",39067,NM_025626,66540,Mm.277864,NM_025626,ENSMUSG00000026655,Fam107b,3110001A13Rik|AA589595|AA959793|AI132312,"family with sequence similarity 107, member B",protein-coding,23.17,21.46,22.21,29,34.13,24.26,43.03,15.12,0,0,0,0,0,0,0,0,68.69,91.23,19.56,59.25,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,4.53304463938767,4.54778686460108,5.67858233975083,5.2863933728628
Merged-chr4-145257519-4,chr4,145257368,145257663,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15|LTR|ERVL,-10645,NM_011610,21938,Mm.235328,NM_011610,ENSMUSG00000028599,Tnfrsf1b,CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75,"tumor necrosis factor receptor superfamily, member 1b",protein-coding,31.03,32.68,19.86,26.37,34.73,39.93,33.41,17.64,0,0,0,0,0,0,0,0,81.9,128.87,19,82.69,76.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.7021393587151,4.69337318649636,6.04820409959923,5.50057399756582
Merged-chr13-36218573-1,chr13,36218434,36218713,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_024274, intron 2 of 6)","intron (NM_024274, intron 2 of 6)",100930,NM_001039189,69955,Mm.70690,NM_024274,ENSMUSG00000021420,Fars2,Fars1|pheRS,phenylalanine-tRNA synthetase 2 (mitochondrial),protein-coding,2.9,6.41,4.71,4.99,2.42,10.11,5.06,7.25,0,0,0,0,0,0,0,7.49,26.42,33.07,5.59,3.91,11.33,15.77,8.99,0,0,14.19,30.93,8.73,17.14,17.89,0,Equal basal,2.36431338417951,2.49908893471474,4.30387625610398,2.74943598726716
Merged-chr8-13162321-4,chr8,13162184,13162464,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010684, intron 1 of 8)","intron (NM_010684, intron 1 of 8)",3163,NM_010684,16783,Mm.16716,NM_010684,ENSMUSG00000031447,Lamp1,CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk,lysosomal-associated membrane protein 1,protein-coding,33.1,43.89,35,22.26,40.19,34.87,41,27.1,0,0,0,0,0,0,0,0,103.04,131.15,19,52.74,94.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.97544263515879,4.90968755175406,6.22383094062637,5.38940159453281
Merged-chr17-56507293-4,chr17,56507110,56507461,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,5198,NM_011483,20834,Mm.76862,NM_011483,ENSMUSG00000044526,Znrf4,1700094M01Rik|Ssrzf1|spzn,zinc and ring finger 4,protein-coding,61.64,46.13,38.7,47.49,32.31,42.96,45.56,30.25,0,0,0,0,0,0,0,0,140.69,149.4,23.48,82.03,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,5.50889876789827,4.98891665007802,6.53869943882393,5.58564346455623
Merged-chr9-101097783-2,chr9,101097669,101097896,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001100451, intron 1 of 1)","intron (NM_001100451, intron 1 of 1)",23020,NM_001100451,77853,Mm.326206,NM_001100451,ENSMUSG00000066415,Msl2,E130103E02Rik|Msl2l1|Rnf184,MSL complex subunit 2,protein-coding,1.24,5.77,5.38,2.28,2.02,12.13,8.61,6.93,0,0,0,0,0,0,0,0,22.46,68.43,4.47,14.97,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,1.94053730918755,2.65472878205038,4.69791272967906,3.59017460400718
Merged-chr3-88237882-2,chr3,88237513,88238153,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,16851,NM_021375,58176,Mm.103777,NM_021375,ENSMUSG00000104445,Rhbg,-,Rhesus blood group-associated B glycoprotein,protein-coding,6.62,7.69,4.71,6.48,12.72,14.66,12.65,14.18,0,0,0,0,0,0,0,0,35.01,62.72,3.91,33.2,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,2.78149854185931,3.57551476717442,4.94190797058315,4.09172364690888
Merged-chr18-38212833-4,chr18,38212690,38213022,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3094,NM_029357,75599,Mm.36560,NM_029357,ENSMUSG00000051375,Pcdh1,2010005A06Rik|AI585920,protocadherin 1,protein-coding,51.3,49.98,20.19,41.27,52.91,54.08,69.35,42.22,0,0,0,0,0,0,0,0,97.75,166.5,35.21,93.1,111.81,0,0,0,0,0,0,0,0,0,0,Equal basal,5.20064989377195,5.50546817807089,6.35646440506987,6.0261063829605
Merged-chr2-143081526-1,chr2,143081413,143081640,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"3' UTR (NM_020595, exon 4 of 4)","3' UTR (NM_020595, exon 4 of 4)",3133,NM_020595,57329,Mm.157751,NM_020595,ENSMUSG00000027416,Otor,CDRAP|Fdp|MIA|MIAL,otoraplin,protein-coding,3.31,2.88,2.36,3.07,4.85,8.59,4.05,1.89,0,0,0,0,0,0,0,0,27.08,31.93,4.47,9.77,6.04,0,0,0,0,0,0,0,0,0,0,Equal basal,1.81019937099956,2.1773045342484,4.29682788087906,2.75996831583105
Merged-chr16-4908461-1,chr16,4908350,4908573,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_001357062, intron 2 of 17)",MT2B1|LTR|ERVL,22361,NM_001357061,17237,Mm.291326,NM_029657,ENSMUSG00000022517,Mgrn1,2610042J20Rik|mKIAA0544|md|nc,"mahogunin, ring finger 1",protein-coding,12.41,15.7,5.72,8.5,21.81,21.23,17.21,12.6,0,0,0,0,0,0,0,0,32.36,47.9,8.94,21.49,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.3311521788928,3.97944913653695,4.69921130196372,3.95223411419891
Merged-chr12-119113961-4,chr12,119113788,119114158,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,124303,NM_177290,320910,Mm.217000,NM_177290,ENSMUSG00000025321,Itgb8,4832412O06Rik,integrin beta 8,protein-coding,31.03,33.32,28.61,38.38,49.27,55.09,43.03,29.3,0,0,0,0,0,0,0,0,97.75,181.33,24.59,55.99,55.91,0,0,0,0,0,0,0,0,0,0,Equal basal,4.96932617144594,5.18573096463662,6.41736302686803,5.29034361596603
Merged-chr5-59854981-4,chr5,59854832,59855167,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,131003,NR_040683,71057,Mm.50817,NR_040682,ENSMUSG00000106013,4933402J10Rik,-,RIKEN cDNA 4933402J10 gene,ncRNA,31.44,17.94,17.5,31.11,32.51,27.29,31.38,20.8,0,0,0,0,0,0,0,0,67.37,93.52,22.36,55.34,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,4.52537680273971,4.57534062227736,5.68232570537712,5.19386354985395
Merged-chr9-99563860-4,chr9,99563700,99564011,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028768, intron 1 of 21)","intron (NM_028768, intron 1 of 21)",5044,NM_001166138,74125,Mm.234823,NM_028768,ENSMUSG00000032468,Armc8,1200015K23Rik|Gid5|HSPC056,armadillo repeat containing 8,protein-coding,26.48,29.47,32.65,35.22,50.89,50.04,63.27,38.75,0,0,0,0,0,0,0,0,86.53,109.48,36.33,71.62,100.48,0,0,0,0,0,0,0,0,0,0,Equal basal,4.89290467940865,5.39844827929069,5.97132566447978,5.86599444818341
Merged-chr1-191850037-2,chr1,191849880,191850159,+,1000,.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B4|SINE|B4,28546,NM_010892,18005,Mm.33773,NM_010892,ENSMUSG00000026622,Nek2,AA617254|C77054,NIMA (never in mitosis gene a)-related expressed kinase 2,protein-coding,4.96,8.65,10.1,9.38,17.37,9.1,25.82,17.64,36.9,4.51,81.83,22.82,50.82,17.67,48.75,78.66,36.33,51.32,10.06,20.83,47.6,283.89,310.11,306.09,350.87,248.29,413.66,401.37,144,339.95,327.48,Equal basal,3.07475519501251,3.86602137066251,4.82733239256994,4.34770577814758
Merged-chr2-4567793-4,chr2,4567621,4568001,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001177844, intron 2 of 11)","intron (NM_001177844, intron 2 of 11)",8057,NM_001177844,209630,Mm.37932,NM_172475,ENSMUSG00000026657,Frmd4a,2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294,FERM domain containing 4A,protein-coding,21.93,29.79,27.93,18.84,36.35,37.91,41,10.4,0,0,0,0,0,0,0,0,66.05,131.15,21.24,55.99,81.59,0,0,0,0,0,0,0,0,0,0,Equal basal,4.54791138540606,4.56878525523016,5.9083832507192096,5.39998819988279
Merged-chr2-104687500-8,chr2,104687326,104687710,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177190, intron 7 of 9)","intron (NM_177190, intron 7 of 9)",24644,NM_177190,320554,Mm.249065,NM_177190,ENSMUSG00000027175,Tcp11l1,C130096D04Rik,t-complex 11 like 1,protein-coding,26.48,57.03,33.99,35.75,77.14,72.28,48.09,27.41,147.6,157.87,313.69,125.54,234.72,278.23,363.44,314.64,99.74,134.57,36.33,70.32,59.68,780.7,575.28,394.05,584.79,560.42,761.59,898.71,332.57,629.8,522.57,Equal basal,5.14374774148544,5.45660910382842,6.21897652639508,5.61146968079981
Merged-chrX-102094675-4,chrX,102094495,102094811,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-23346,NM_001278534,331474,Mm.23297,NM_183318,ENSMUSG00000049191,Rtl5,6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001,retrotransposon Gag like 5,protein-coding,34.75,37.16,21.88,19.98,50.28,44.98,62.26,22.06,0,0,0,0,0,0,0,0,62.75,109.48,40.24,85.94,80.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.73048795721798,5.15507404760209,5.74382556800875,5.89753118209355
Merged-chr1-120080878-4,chr1,120080715,120081024,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-7089,NM_019432,170706,Mm.24750,NM_019432,ENSMUSG00000050777,Tmem37,AI173373|AW540203|Pr|Pr1,transmembrane protein 37,protein-coding,43.44,54.78,37.02,42.15,80.37,70.26,66.31,47.89,0,0,0,0,0,0,0,0,115.59,152.82,43.04,106.78,112.57,0,0,0,0,0,0,0,0,0,0,Equal basal,5.38749596137858,5.77522617640795,6.41461285624927,6.18906920354051
Merged-chr2-69719525-4,chr2,69719335,69719674,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15-int|LTR|ERVL,-3584,NM_001081086,228005,Mm.11815,NM_001081086,ENSMUSG00000042133,Ppig,AU019516|AU022200|B230312B02Rik|CYP|SRCyp,peptidyl-prolyl isomerase G (cyclophilin G),protein-coding,83.57,108.28,74.04,44.34,102.79,120.29,87.07,50.1,0,0,0,0,0,0,0,0,217.97,310.2,55.89,181.65,207.01,0,0,0,0,0,0,0,0,0,0,Equal basal,6.13055938367906,6.16873486408396,7.37457194970173,6.85617397447099
Merged-chr11-54727548-4,chr11,54727387,54727724,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178626, intron 3 of 5)","intron (NM_178626, intron 3 of 5)",60148,NM_178626,72729,Mm.29476,NM_178626,ENSMUSG00000052298,Cdc42se2,2810404F18Rik|AA408783|AA536669|SPEC2,CDC42 small effector 2,protein-coding,43.02,30.43,17.84,20.42,43.42,37.91,50.11,18.9,0,0,0,0,0,0,0,0,81.24,98.08,40.8,65.11,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66667953356008,4.91247641871076,5.84861403062765,5.46913257511818
Merged-chr12-4188412-4,chr12,4188232,4188560,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001159537, intron 3 of 21)","intron (NM_001159537, intron 3 of 21)",45569,NM_134046,52504,Mm.70546,NM_134046,ENSMUSG00000020652,Cenpo,2810429O05Rik|8430427C03Rik|D12Ertd482e,centromere protein O,protein-coding,27.3,21.14,21.88,29.53,24.84,23.25,35.43,20.8,0,0,0,0,0,0,0,0,75.3,86.67,20.12,43.62,64.22,0,0,0,0,0,0,0,0,0,0,Equal basal,4.58542667849922,4.46860461246775,5.70729212104637,5.14505260349092
Merged-chr14-8112114-3,chr14,8111950,8112293,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001360314, intron 1 of 19)","intron (NM_001360314, intron 1 of 19)",13910,NM_001360315,218699,Mm.29515,NM_145458,ENSMUSG00000033885,Pxk,C230080L11Rik|D14Ertd813e|Monaka|Slob,PX domain containing serine/threonine kinase,protein-coding,36.41,65.03,47.79,47.58,36.35,65.2,61.25,40.33,0,0,0,0,0,0,0,0,126.82,207.56,26.27,102.22,144.3,0,0,0,0,0,0,0,0,0,0,Equal basal,5.52274865203658,5.38034999438723,6.69936992994909,6.05408044590939
Merged-chr9-108120886-4,chr9,108120723,108121024,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007567, intron 3 of 11)","intron (NM_007567, intron 3 of 11)",-12845,NR_126078,76873,Mm.436935,NR_126077,ENSMUSG00000102224,4930447F24Rik,-,RIKEN cDNA 4930447F24 gene,ncRNA,26.48,30.43,16.49,13.67,58.97,65.2,63.27,46.32,0,0,0,0,0,0,0,0,65.39,69.57,40.24,81.38,83.86,0,0,0,0,0,0,0,0,0,0,High basal,4.33526670973764,5.60804514963076,5.45249422037524,5.88908302298137
Merged-chr14-13551326-4,chr14,13551166,13551485,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001163032, intron 2 of 4)","intron (NM_001163032, intron 2 of 4)",97367,NM_001163032,72003,Mm.317515,NM_028052,ENSMUSG00000056296,Synpr,1500003F20Rik|SPO,synaptoporin,protein-coding,38.06,59.59,35.34,40.13,56.95,47.01,62.26,34.03,0,0,0,0,0,0,0,0,103.04,166.5,37.45,93.75,82.35,0,0,0,0,0,0,0,0,0,0,Equal basal,5.34004975529882,5.3672255229629,6.39392308655487,5.91353613724011
Merged-chr17-50022624-2,chr17,50022475,50022743,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_181397, intron 7 of 9)",L1MC1|LINE|L1,167888,NM_181397,76438,Mm.41854,NM_181397,ENSMUSG00000039316,Rftn1,2310015N21Rik|AI853526,raftlin lipid raft linker 1,protein-coding,2.48,3.2,5.05,5.96,1.82,0,1.01,3.15,19.68,9.02,0,22.82,12.1,0,0,0,46.9,88.95,2.79,1.95,1.51,276.01,328.09,182.95,226.6,290.85,34.79,13.09,41.14,25.05,0,Equal basal,2.22465482476929,1.01732676974764,5.39191116413604,1.53974655566235
Merged-chr17-67450310-4,chr17,67450150,67450469,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-95818,NM_001357625,19274,Mm.311809,NM_008984,ENSMUSG00000033278,Ptprm,RPTPmu|mKIAA4044,"protein tyrosine phosphatase, receptor type, M",protein-coding,18.62,16.98,13.8,28.57,22.42,24.26,35.94,24.26,0,0,0,0,0,0,0,0,74.64,80.97,21.24,65.11,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19435207769782,4.49671061930624,5.65299343330434,5.29926697076557
Merged-chr2-103569989-4,chr2,103569806,103570146,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178890, intron 1 of 16)","intron (NM_178890, intron 1 of 16)",3666,NM_178890,99382,Mm.35850,NM_178890,ENSMUSG00000032724,Abtb2,AW539457|BPOZ-2,ankyrin repeat and BTB (POZ) domain containing 2,protein-coding,36.41,36.2,20.19,18.84,71.69,75.31,60.74,32.45,0,0,0,0,0,0,0,0,81.24,128.87,43.6,111.33,116.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.69055588147737,5.58972160154361,6.04246048304433,6.23070539486071
Merged-chr13-102684890-4,chr13,102684732,102685032,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8665,NM_001360519,17079,Mm.373974,NM_008533,ENSMUSG00000021624,Cd180,F630107B15|Ly-78|Ly78|RP105,CD180 antigen,protein-coding,17.38,30.11,21.2,30.58,42.81,42.96,41.51,32.77,0,0,0,0,0,0,0,0,74.64,91.23,36.33,74.87,71.77,0,0,0,0,0,0,0,0,0,0,Equal basal,4.55357566227826,5.08254595486394,5.7373182703425,5.72790053441688
Merged-chr1-162625081-4,chr1,162624937,162625284,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-14040,NM_010865,17926,Mm.10694,NM_010865,ENSMUSG00000026697,Myoc,AI957332|GLC1A|TIGR,myocilin,protein-coding,14.48,24.35,13.8,20.24,28.47,19.71,28.85,8.82,172.21,144.34,259.13,197.81,106.47,83.91,252.63,127.35,87.19,92.38,14.53,32.55,34,544.13,714.6,327.2,603.06,425.64,363.4,296.66,188.57,393.62,278.7,Equal basal,4.11624378146259,4.08466127780041,5.85632498422362,4.5624674892374
Merged-chr12-76579971-1,chr12,76579863,76580080,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr,TTS (NM_013675),TTS (NM_013675),-32046,NR_046044,100504549,Mm.440349,NR_046044,ENSMUSG00000112388,AI463170,-,expressed sequence AI463170,ncRNA,6.21,2.88,1.01,2.02,3.84,5.05,4.05,2.21,0,0,0,0,0,0,0,0,23.78,44.48,2.79,9.77,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,1.64491106550301,1.9556650141437,4.43595367206872,2.69967144836693
Merged-chr11-32358598-4,chr11,32358449,32358748,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177364, intron 1 of 12)",MIR|SINE|MIR,10787,NM_177364,268396,Mm.227616,NM_177364,ENSMUSG00000040711,Sh3pxd2b,G431001E03Rik|TSK4|fad49,SH3 and PX domains 2B,protein-coding,30.2,19.86,15.14,24.45,51.9,45.49,68.84,34.03,0,0,0,0,0,0,0,0,72,70.71,29.62,52.09,97.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.40031812562961,5.36374845684399,5.53197356894396,5.60562228241824
Merged-chr15-84351496-4,chr15,84351229,84351687,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,25339,NM_001162500,64099,Mm.251356,NM_022321,ENSMUSG00000022439,Parvg,AI413459,"parvin, gamma",protein-coding,36.41,19.86,56.2,57.66,44.83,58.63,55.18,39.7,0,0,0,0,0,0,0,0,128.14,181.33,36.89,119.8,142.03,0,0,0,0,0,0,0,0,0,0,Equal basal,5.23475490790654,5.37619246835077,6.61020501329047,6.2814955086986
Merged-chr19-6877117-3,chr19,6876891,6877305,+,1000,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RLTR19|LTR|ERVK,-18887,NM_001081291,78317,Mm.329596,NM_198008,ENSMUSG00000047810,Ccdc88b,2610041P08Rik|Ccdc88,coiled-coil domain containing 88B,protein-coding,7.45,7.05,4.71,2.63,41.4,70.26,19.74,23.63,0,0,0,0,0,0,0,0,35.67,50.18,36.89,97.66,94.44,0,0,0,0,0,0,0,0,0,0,High basal,2.53226475097863,4.86202852328156,4.79892974404203,5.99060877760298
Merged-chr1-136609046-4,chr1,136608881,136609198,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15862,NM_177643,226442,Mm.62521,NM_177643,ENSMUSG00000041483,Zfp281,Znf281,zinc finger protein 281,protein-coding,26.48,19.22,28.61,26.37,24.64,39.93,39.48,18.59,0,0,0,0,0,0,0,0,78.6,93.52,17.89,64.46,66.48,0,0,0,0,0,0,0,0,0,0,Equal basal,4.59727136607014,4.64474091442522,5.79144804850168,5.28994941167398
Merged-chr7-114316611-4,chr7,114316442,114316771,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_029437, intron 3 of 3)","intron (NR_029437, intron 3 of 3)",-40490,NM_011965,26440,Mm.121265,NM_011965,ENSMUSG00000030751,Psma1,C2|HC2|Pros-30|alpha-type,"proteasome (prosome, macropain) subunit, alpha type 1",protein-coding,38.47,24.35,45.1,42.06,25.65,21.73,68.84,46.32,0,0,0,0,0,0,0,0,119.55,158.52,31.3,101.57,96.7,0,0,0,0,0,0,0,0,0,0,Equal basal,5.13287680362937,4.95896284248099,6.46477176500614,5.94309212490961
Merged-chr13-49183953-4,chr13,49183781,49184107,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3603,NM_013610,18081,Mm.18503,NM_013610,ENSMUSG00000037966,Ninj1,AU024536,ninjurin 1,protein-coding,43.44,41.01,43.08,35.58,52.51,74.8,64.79,32.77,0,0,0,0,0,0,0,0,100.4,167.64,30.74,99.61,124.66,0,0,0,0,0,0,0,0,0,0,Equal basal,5.28219685943922,5.51029252013096,6.38030831480882,6.04592526913219
Merged-chr7-66375640-2,chr7,66375535,66375748,+,1000,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_146191, intron 2 of 33)","intron (NM_146191, intron 2 of 33)",6083,NR_106024,102465640,NA,NR_106024,ENSMUSG00000098353,Mir7057,Gm27550|mmu-mir-7057,microRNA 7057,ncRNA,1.24,1.6,2.36,0.61,2.02,0,4.56,0,12.3,58.64,54.55,22.82,0,30.91,0,0,21.8,45.62,1.68,0,6.04,370.64,319.1,172.4,307.01,170.25,50.26,61.08,37.71,32.21,41.81,Equal basal,1.02229362993867,0.815178201126649,4.39434212965897,1.36811038248657
Merged-chr12-87260734-4,chr12,87260556,87260900,+,1000,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_134044, exon 3 of 19)","exon (NM_134044, exon 3 of 19)",3516,NM_134044,104799,Mm.208750,NM_134044,ENSMUSG00000021038,Vipas39,6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39,"VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog",protein-coding,44.27,50.62,33.32,43.9,37.56,50.54,42.01,38.12,0,0,0,0,0,0,0,0,110.97,152.82,29.62,72.27,97.46,0,0,0,0,0,0,0,0,0,0,Equal basal,5.34219311723937,5.14842846893953,6.38552095171653,5.75976508856916
Merged-chr2-118961698-7,chr2,118961529,118961834,+,999.857117,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,35184,NM_028117,72136,Mm.486238,NM_028117,ENSMUSG00000074916,Chst14,2600016L03Rik|D4ST-1|D4st1,carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14,protein-coding,16.55,24.03,17.16,25.94,111.07,114.73,133.13,86.33,56.58,54.13,27.28,125.54,142.77,264.98,141.83,172.3,87.85,106.06,68.19,136.07,140.52,319.38,408.99,154.8,255.84,375.98,386.59,501.71,168,261.22,529.54,High basal,4.32432955264066,6.52408810519119,5.95955903524672,6.62822321517949
Merged-chr7-135768769-4,chr7,135768638,135768951,+,999.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-52415,NM_001081117,17345,Mm.4078,NM_001081117,ENSMUSG00000031004,Mki67,D630048A14Rik|Ki-67|Ki67,antigen identified by monoclonal antibody Ki 67,protein-coding,23.58,25.63,15.14,13.93,34.33,31.34,41.51,12.29,0,0,0,0,0,0,0,0,52.84,84.39,21.8,66.41,77.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.20809028538156,4.55306089336056,5.43847335581056,5.46537963876319
Merged-chr1-53742287-5,chr1,53742078,53742465,+,999.599976,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-35487,NM_001252070,627872,Mm.184692,NM_001252070,ENSMUSG00000096141,Dnah7a,Dnahc7|Dnahc7a|Gm992,"dynein, axonemal, heavy chain 7A",protein-coding,0,0.96,2.02,1.14,65.03,65.71,83.52,37.81,19.68,22.55,0,0,130.67,194.32,181.72,131.1,11.23,17.11,30.74,58.6,84.62,59.14,139.33,14.07,146.2,28.38,224.22,309.75,144,236.17,257.8,High basal,0.816932972694005,5.67769494296765,3.29195516335854,5.61143668992706
Merged-chr7-92698918-8,chr7,92698678,92699206,+,999.270813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-29030,NM_029078,74737,Mm.288645,NM_029078,ENSMUSG00000041328,Pcf11,2500001H09Rik|5730417B17Rik|C77803,PCF11 cleavage and polyadenylation factor subunit,protein-coding,56.26,163.71,84.14,63.09,233.04,264.85,215.13,96.73,140.22,221.02,181.85,106.52,154.87,119.24,221.61,176.05,354.03,502.93,153.15,376.97,407.97,887.16,705.61,538.3,709.05,1220.15,912.36,977.24,599.99,819.46,1017.27,Equal basal,6.30752956449422,7.301895157027,8.06969763617746,8.01088519522246
Merged-chr15-97195909-4,chr15,97195724,97196087,+,999.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28661,NR_155279,102635594,Mm.392594,NR_155278,ENSMUSG00000116295,Gm32885,-,"predicted gene, 32885",ncRNA,29.37,30.43,15.48,28.39,38.98,43.97,39.99,13.55,0,0,0,0,0,0,0,0,72.66,85.53,20.68,49.48,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.60194028114637,4.72594771201843,5.67264056082947,5.25395490236561
Merged-chr17-35170968-4,chr17,35170777,35171176,+,999.049988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_001361501),TTS (NM_001361501),5076,NM_019467,11629,Mm.10747,NM_019467,ENSMUSG00000024397,Aif1,AI607846|AIF-1|D17H6S50E|G1|Iba1,allograft inflammatory factor 1,protein-coding,25.24,61.19,17.84,16.21,86.03,74.3,48.59,25.84,14.76,27.06,22.73,22.82,21.78,22.08,48.75,37.46,98.42,116.32,26.27,99.61,80.84,23.66,53.93,0,36.55,0,50.26,30.54,13.71,7.16,0,Equal basal,4.64284282962776,5.4959324005044,6.10587273505011,5.76690532564488
Merged-chr8-40584864-8,chr8,40584663,40585020,+,998.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001040699, intron 6 of 13)","intron (NM_001040699, intron 6 of 13)",49951,NM_001040699,54384,Mm.294871,NM_019433,ENSMUSG00000039431,Mtmr7,-,myotubularin related protein 7,protein-coding,50.47,61.83,58.22,65.37,119.55,88.45,125.03,82.55,145.14,144.34,181.85,106.52,130.67,317.98,234.9,206.01,179.66,257.74,52.54,168.63,194.92,800.42,880.89,429.23,730.98,1021.52,692,820.19,452.56,762.2,801.28,Equal basal,5.80056894128356,6.41869939025049,7.103314491688,6.76258048165484
Merged-chr16-31938606-4,chr16,31938377,31938754,+,998.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172822, intron 1 of 2)",MT2B|LTR|ERVL,4714,NM_172822,239827,Mm.440388,NM_172822,ENSMUSG00000045625,Pigz,F630022B06Rik,"phosphatidylinositol glycan anchor biosynthesis, class Z",protein-coding,13.65,23.71,14.81,14.63,19.99,26.79,39.48,13.86,0,0,0,0,0,0,0,0,53.5,79.83,22.36,46.88,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.00822098418581,4.33501887437432,5.40798184575347,5.129831512575
Merged-chr16-91612723-4,chr16,91612564,91612921,+,998.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,6257,NM_001099738,246738,Mm.101927,NM_138664,ENSMUSG00000039763,Dnajc28,BC020175|ORF28,DnaJ heat shock protein family (Hsp40) member C28,protein-coding,23.58,23.71,17.84,16.47,49.27,60.15,63.78,33.08,0,0,0,0,0,0,0,0,56.8,68.43,40.24,70.97,69.51,0,0,0,0,0,0,0,0,0,0,High basal,4.29673272519888,5.40215268809871,5.34158065782069,5.73574392992782
Merged-chr1-130417452-4,chr1,130417314,130417585,+,997.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007827, intron 4 of 9)","intron (NM_007827, intron 4 of 9)",-5375,NR_151525,102640368,NA,NR_151525,ENSMUSG00000087691,Gm15674,-,predicted gene 15674,ncRNA,18.2,27.23,13.46,10.69,29.69,44.48,65.81,13.86,0,0,0,0,0,0,0,0,66.05,77.55,38.01,55.99,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.02440361515192,4.83364953453092,5.53608352708155,5.44126100985284
Merged-chr10-79506876-4,chr10,79506737,79507052,+,997.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,24196,NR_105874,102465548,NA,NR_105874,ENSMUSG00000098414,Mir6909,Gm27727|mmu-mir-6909,microRNA 6909,ncRNA,21.1,19.86,13.8,32.95,27.26,32.85,37.96,28.04,0,0,0,0,0,0,0,0,64.73,91.23,20.68,63.15,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.34732861356161,4.73408606929767,5.63658767027393,5.35293975284567
Merged-chr18-34958559-4,chr18,34958373,34958754,+,997.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4212,NM_010481,15526,Mm.209419,NM_010481,ENSMUSG00000024359,Hspa9,74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74,heat shock protein 9,protein-coding,20.68,28.83,17.16,26.11,40.79,41.95,27.84,20.48,0,0,0,0,0,0,0,0,78.6,90.09,24.03,58.6,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.47013925241386,4.74384399863614,5.76507915996312,5.35485411547917
Merged-chr19-29498084-4,chr19,29497928,29498262,+,997.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1M2|LINE|L1,23892,NR_015567,77779,Mm.458738,NR_015567,ENSMUSG00000097855,A930007I19Rik,-,RIKEN cDNA A930007I19 gene,ncRNA,24.41,16.34,18.17,22.08,17.97,22.24,31.89,15.44,0,0,0,0,0,0,0,0,67.37,76.41,15.09,32.55,61.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.28852783912687,4.19136757240799,5.53963542055097,4.85364360978286
Merged-chr18-66453584-4,chr18,66453291,66453748,+,997.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1D2|LTR|ERVL-MaLR,-5085,NM_021451,58801,Mm.271878,NM_021451,ENSMUSG00000024521,Pmaip1,Noxa,phorbol-12-myristate-13-acetate-induced protein 1,protein-coding,23.17,37.8,22.89,29.79,57.96,43.97,52.14,45.69,0,0,0,0,0,0,0,0,93.13,137.99,30.18,100.26,133.72,0,0,0,0,0,0,0,0,0,0,Equal basal,4.75492241590721,5.38694987313016,6.18812269782032,6.07378499690536
Merged-chr12-80065221-4,chr12,80065004,80065425,+,997,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,47799,NM_007564,12192,Mm.235132,NM_007564,ENSMUSG00000021127,Zfp36l1,AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1,"zinc finger protein 36, C3H type-like 1",protein-coding,32.27,26.59,10.77,19.8,30.09,30.83,29.87,21.11,0,0,0,0,0,0,0,0,72.66,80.97,15.09,56.64,61.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.34611651332002,4.56188091432536,5.63394128578236,5.11191672981213
Merged-chr10-67049028-4,chr10,67048876,67049189,+,996.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178606, intron 2 of 7)","intron (NM_178606, intron 2 of 7)",43957,NR_110511,102634101,Mm.445258,NR_110511,ENSMUSG00000112925,Gm31763,-,"predicted gene, 31763",ncRNA,19.03,17.94,10.77,18.05,26.25,34.87,27.84,17.96,0,0,0,0,0,0,0,0,44.91,70.71,24.59,50.13,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.00178279177774,4.47965321741001,5.19975631843758,5.26318013936854
Merged-chr14-9393606-4,chr14,9393415,9393785,+,996.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-490495,NR_030680,100042415,Mm.235938,NR_030680,ENSMUSG00000089686,Mnd1-ps,Gm3833,Mnd1 retrotransposed pseudogene,pseudo,21.93,27.55,28.61,31.02,26.86,43.97,28.35,25.52,0,0,0,0,0,0,0,0,83.88,91.23,11.74,34.51,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.70686905175381,4.70274924804471,5.82012440478395,4.51218688755427
Merged-chr18-32311948-4,chr18,32311791,32312139,+,995.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-65252,NM_001083334,30948,Mm.4383,NM_009668,ENSMUSG00000024381,Bin1,ALP-1|Amphl|BRAMP-2|SH3P9,bridging integrator 1,protein-coding,23.99,38.44,20.87,24.1,38.17,50.04,41,18.27,0,0,0,0,0,0,0,0,76.62,95.8,17.33,56.64,77.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66607048265538,4.88323604979036,5.79041039511375,5.28868195017034
Merged-chr10-67490060-4,chr10,67489880,67490210,+,995.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-47824,NM_010118,13654,Mm.290421,NM_010118,ENSMUSG00000037868,Egr2,Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6,early growth response 2,protein-coding,15.72,24.03,19.86,32.42,30.9,20.72,33.92,23.32,0,0,0,0,0,0,0,0,72.66,99.22,25.71,64.46,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.4355346593875,4.5158214028586,5.77765085102962,5.35132218716683
Merged-chr8-4521719-4,chr8,4521513,4521893,+,995.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026058, intron 9 of 10)","intron (NM_026058, intron 9 of 10)",28298,NM_026058,67260,Mm.35511,NM_026058,ENSMUSG00000008206,Cers4,2900019C14Rik|Lass4|Trh1,ceramide synthase 4,protein-coding,24.82,20.18,17.16,27.78,15.55,25.27,29.36,21.74,0,0,0,0,0,0,0,0,58.79,90.09,20.68,46.23,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.42503311412521,4.28279463880556,5.55972518574349,4.99786558145463
Merged-chr4-40823792-4,chr4,40823632,40823928,+,994.833374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_022305, intron 1 of 5)","intron (NM_022305, intron 1 of 5)",26358,NR_039584,100628614,NA,NR_039584,ENSMUSG00000096377,Mir5123,mmu-mir-5123|mu-mir-5123,microRNA 5123,ncRNA,26.06,38.76,14.81,19.63,25.24,41.45,22.78,15.75,0,0,0,0,0,0,0,0,83.88,144.84,20.12,70.32,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.50251559687457,4.42041335995465,6.14832299973143,5.35233154512512
Merged-chr14-73474994-4,chr14,73474783,73475135,+,994.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-35090,NM_026119,67381,Mm.282888,NM_026119,ENSMUSG00000022109,Med4,2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip,mediator complex subunit 4,protein-coding,25.24,19.22,18.17,23.04,28.88,36.39,26.32,26.15,0,0,0,0,0,0,0,0,61.43,74.13,16.77,61.85,77.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.37528807987903,4.64893837651752,5.45305323955198,5.31492998971782
Merged-chr17-17600182-4,chr17,17600063,17600320,+,994.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172827, intron 1 of 17)","intron (NM_172827, intron 1 of 17)",24298,NM_172827,240028,Mm.328807,NM_172827,ENSMUSG00000023845,Lnpep,2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165,leucyl/cystinyl aminopeptidase,protein-coding,18.2,25.31,12.12,24.97,35.14,16.68,28.85,15.75,0,0,0,0,0,0,0,0,56.8,96.94,24.59,55.34,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.24943235837134,4.29581113220416,5.58737622426754,5.24525453943297
Merged-chr14-66844824-8,chr14,66844590,66845030,+,994.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009955, intron 3 of 13)","intron (NM_009955, intron 3 of 13)",23790,NM_009955,12934,Mm.352648,NM_009955,ENSMUSG00000022048,Dpysl2,AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2,dihydropyrimidinase-like 2,protein-coding,47.16,63.43,32.65,39.17,55.94,80.87,66.82,26.47,223.87,207.49,304.6,243.46,246.82,432.8,292.52,104.88,114.93,206.42,26.83,44.27,57.42,1033.05,1146.06,682.55,1027.03,1106.65,529.63,632.59,507.42,622.64,599.21,Equal basal,5.40012660058,5.49517140465686,6.62522408484298,5.23355514794744
Merged-chr3-101601033-4,chr3,101600879,101601270,+,994.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_144900, intron 1 of 22)","intron (NM_144900, intron 1 of 22)",3633,NM_144900,11928,Mm.193670,NM_144900,ENSMUSG00000033161,Atp1a1,Atpa-1|BC010319,"ATPase, Na+/K+ transporting, alpha 1 polypeptide",protein-coding,20.68,24.03,21.54,29.44,25.85,24.77,33.41,25.52,0,0,0,0,0,0,0,0,57.46,94.66,27.95,55.99,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.52901725197677,4.54603288189661,5.57865950190067,5.31057157170398
Merged-chr16-17727404-4,chr16,17727281,17727526,+,994.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTE2b|LTR|ERVL-MaLR,-4456,NM_001040683,94112,Mm.208970,NM_033609,ENSMUSG00000012114,Med15,A230074L19Rik|AW536074|Pcqap|mPcqap,mediator complex subunit 15,protein-coding,26.06,15.7,15.48,19.36,35.74,22.24,22.27,12.6,0,0,0,0,0,0,0,0,38.31,99.22,29.62,48.83,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19653258150543,4.2500333660165,5.3279306849753,5.19949196841042
Merged-chr1-84883133-4,chr1,84882940,84883325,+,993.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025386, intron 2 of 3)","intron (NM_025386, intron 2 of 3)",43291,NM_025386,66153,Mm.381192,NM_025386,ENSMUSG00000073633,Fbxo36,0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e,F-box protein 36,protein-coding,16.96,21.46,17.5,37.85,32.92,13.14,48.59,29.3,0,0,0,0,0,0,0,0,71.33,108.34,27.95,81.38,65.73,0,0,0,0,0,0,0,0,0,0,Equal basal,4.43043690680422,4.59950126023141,5.82703763929601,5.60253201036689
Merged-chr3-146158191-4,chr3,146158005,146158334,+,993.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001005846, intron 1 of 13)","intron (NM_001005846, intron 1 of 13)",7995,NM_001005846,68279,Mm.116862,NM_026656,ENSMUSG00000011008,Mcoln2,3300002C04Rik|AI549968|C86638|TRPML2,mucolipin 2,protein-coding,19.03,16.34,16.15,20.07,30.09,24.26,29.87,17.01,0,0,0,0,0,0,0,0,38.97,74.13,20.12,41.02,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.13447397413977,4.41582451293541,5.13388228365181,5.07597058316608
Merged-chr2-91483638-7,chr2,91483494,91483800,+,993.904785,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172668, intron 16 of 37)",B3|SINE|B2,26116,NM_001145857,228357,Mm.275149,NM_172668,ENSMUSG00000027253,Lrp4,6430526J12Rik|D230026E03|Megf7|mdig,low density lipoprotein receptor-related protein 4,protein-coding,28.55,18.58,14.81,26.81,37.97,22.74,33.41,17.64,34.44,63.15,68.19,53.26,82.27,35.33,79.78,78.66,71.33,111.76,14.53,65.76,69.51,220.8,251.68,172.4,153.51,290.85,289.95,257.4,106.28,143.14,195.09,Equal basal,4.39104270572669,4.5260289164516,5.84910405385853,5.22474713211937
Merged-chrX-19171999-4,chrX,19171838,19172169,+,993.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,GA-rich|Low_complexity|Low_complexity,-25032,NR_029807,723828,NA,NR_029807,ENSMUSG00000065471,Mir222,Mirn222|mir-222|mmu-mir-222,microRNA 222,ncRNA,26.48,14.74,18.85,21.82,35.95,26.79,34.93,15.44,0,0,0,0,0,0,0,0,50.86,80.97,19,48.18,59.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30153629699938,4.52205371124893,5.38240101986566,5.13058658794316
Merged-chr4-33073168-4,chr4,33072988,33073416,+,993.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008076, intron 2 of 8)",B2_Mm2|SINE|B2,10090,NM_008076,14409,Mm.6227,NM_008076,ENSMUSG00000023267,Gabrr2,-,"gamma-aminobutyric acid (GABA) C receptor, subunit rho 2",protein-coding,33.1,78.49,23.9,31.54,36.35,58.12,58.72,20.48,0,0,0,0,0,0,0,0,134.74,168.78,25.15,70.97,101.99,0,0,0,0,0,0,0,0,0,0,Equal basal,5.16493669597994,5.0853817310362,6.59489555316345,5.69607486742057
Merged-chr15-8635621-4,chr15,8635468,8635790,+,993.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_148938, exon 10 of 10)","3' UTR (NM_148938, exon 10 of 10)",75178,NM_148938,20512,Mm.204834,NM_148938,ENSMUSG00000005360,Slc1a3,AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1,"solute carrier family 1 (glial high affinity glutamate transporter), member 3",protein-coding,17.38,32.68,18.17,11.22,38.98,45.49,47.58,13.86,0,0,0,0,0,0,0,0,83.22,134.57,34.65,76.18,70.26,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19374475724755,4.82271388330175,6.09036711272321,5.70375059177563
Merged-chr4-126153064-4,chr4,126152900,126153239,+,993,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025856, intron 6 of 11)","intron (NM_025856, intron 6 of 11)",5066,NM_172145,230752,Mm.41569,NM_172145,ENSMUSG00000050212,Eva1b,2610027C15Rik|Fam176b,eva-1 homolog B (C. elegans),protein-coding,21.93,26.27,25.58,28.83,26.66,18.7,38.47,37.18,0,0,0,0,0,0,0,0,73.32,111.76,28.51,70.32,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.62897198306927,4.64345154025614,5.86849770347944,5.44068514843487
Merged-chr9-66915616-4,chr9,66915436,66915768,+,992.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_173413, intron 1 of 7)","intron (NM_173413, intron 1 of 7)",4103,NM_173413,235442,Mm.260376,NM_173413,ENSMUSG00000036943,Rab8b,5930437D16|D330025I23Rik,"RAB8B, member RAS oncogene family",protein-coding,14.48,39.08,14.47,16.3,34.94,21.73,43.03,17.01,0,0,0,0,0,0,0,0,60.77,108.34,25.15,78.13,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2247243070018,4.55041591600168,5.71375462011867,5.5173947831275
Merged-chr9-71805842-4,chr9,71805655,71806029,+,992.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-34240,NM_001304362,68178,Mm.99961,NM_026599,ENSMUSG00000032232,Cgnl1,4933421H10Rik|9930020M10Rik|AI503810|Jacop,cingulin-like 1,protein-coding,26.06,30.11,38.37,26.73,36.35,39.42,57.2,11.66,0,0,0,0,0,0,0,0,97.75,116.32,27.95,70.97,71.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85227461776075,4.74404929153547,6.10108263351188,5.57424234382029
Merged-chr10-87805904-6,chr10,87805745,87806116,+,992.261108,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-52335,NM_001314010,16000,Mm.268521,NM_010512,ENSMUSG00000020053,Igf1,C730016P09Rik|Igf-1|Igf-I,insulin-like growth factor 1,protein-coding,33.51,71.44,22.89,22.17,63.41,77.33,37.46,25.84,34.44,63.15,59.1,26.63,58.08,53,26.59,56.19,103.04,140.27,34.1,100.92,105.77,189.26,220.22,182.95,241.22,241.19,243.55,248.67,130.28,203.97,222.96,Equal basal,4.99762328607926,5.31137485854642,6.27170815371486,6.02276318576835
Merged-chr2-38485201-3,chr2,38485004,38485386,+,992,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-26502,NM_021606,59126,Mm.143818,NM_021606,ENSMUSG00000026749,Nek6,1300007C09Rik,NIMA (never in mitosis gene a)-related expressed kinase 6,protein-coding,7.86,15.38,12.12,24.18,19.59,17.69,26.32,25.84,0,0,0,0,0,0,0,0,50.86,75.27,19.56,31.9,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,3.78088926291877,4.25725675787116,5.33091107973103,4.89560959399322
Merged-chr13-115209595-4,chr13,115209399,115209742,+,991.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-107606,NM_001033228,109700,Mm.317280,NM_001033228,ENSMUSG00000042284,Itga1,CD49A|E130012M19Rik|Vla1,integrin alpha 1,protein-coding,18.2,20.5,11.11,16.12,25.65,33.86,23.79,14.81,0,0,0,0,0,0,0,0,55.48,75.27,19.56,37.76,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.9936738204063,4.33678440207406,5.39208490691062,4.74733178423082
Merged-chr15-6567987-4,chr15,6567846,6568163,+,991.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B4A|SINE|B4,-11843,NM_001278269,23880,Mm.170905,NM_011815,ENSMUSG00000022148,Fyb,ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130,FYN binding protein,protein-coding,31.85,24.03,27.26,26.02,38.17,31.84,38.47,14.18,0,0,0,0,0,0,0,0,79.26,86.67,21.24,59.25,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.70699782722276,4.6110211215614,5.74364222876795,5.19501667200984
Merged-chr19-21913937-4,chr19,21913748,21914098,+,991.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,135583,NM_031997,83921,Mm.329776,NM_031997,ENSMUSG00000024754,Tmem2,-,transmembrane protein 2,protein-coding,23.99,24.03,25.58,34.87,40.99,18.2,49.1,18.9,9.84,0,0,0,9.68,0,0,0,75.96,115.18,17.89,59.9,67.99,0,0,0,0,0,0,0,0,0,0,Equal basal,4.69867655464656,4.63688434202714,5.9149819353607,5.2660029004335
Merged-chr13-113359074-4,chr13,113358884,113359271,+,991.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTD|LTR|ERVL-MaLR,143767,NR_045501,70917,Mm.491036,NR_045501,ENSMUSG00000114790,4921509O07Rik,-,RIKEN cDNA 4921509O07 gene,ncRNA,20.27,10.57,16.49,18.31,28.47,27.29,38.47,18.9,0,0,0,0,0,0,0,0,38.31,69.57,22.92,52.09,64.97,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97014994690113,4.56676397785946,5.07728141315812,5.29402127731885
Merged-chr7-74645734-4,chr7,74645558,74645940,+,991.1875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-90969,NM_001038643,108116,Mm.425467,NM_023908,ENSMUSG00000025790,Slco3a1,5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11,"solute carrier organic anion transporter family, member 3a1",protein-coding,12,17.94,11.78,21.73,44.43,28.81,39.48,15.75,0,0,0,0,0,0,0,0,87.85,141.41,25.15,64.46,89.15,0,0,0,0,0,0,0,0,0,0,Equal basal,3.91904078434974,4.68312738181872,6.16406421391626,5.58693373601939
Merged-chr2-71382133-4,chr2,71381985,71382257,+,991.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER19B|LTR|ERVK,-7139,NM_026115,107435,Mm.272472,NM_026115,ENSMUSG00000027018,Hat1,2410071B14Rik|AA536933|Hat-1|KAT1,histone aminotransferase 1,protein-coding,20.68,9.61,5.05,13.67,21,20.22,22.78,17.33,0,0,0,0,0,0,0,0,51.52,60.44,21.8,41.02,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,3.46772118628241,4.13831517245232,5.1858550899825,4.94142807418971
Merged-chr9-106908916-6,chr9,106908707,106909089,+,990.761902,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153413, intron 46 of 52)","intron (NM_153413, intron 46 of 52)",-16960,NM_029103,74840,Mm.29778,NM_029103,ENSMUSG00000032575,Manf,3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17,mesencephalic astrocyte-derived neurotrophic factor,protein-coding,2.48,2.88,3.37,10.95,43.62,27.29,62.26,18.27,61.5,40.6,27.28,155.97,275.86,220.82,217.18,340.86,23.78,53.6,22.92,50.78,64.22,433.72,220.22,144.25,274.12,99.31,641.75,584.6,390.85,694.21,543.47,High basal,2.26129666324729,4.87154879931282,4.56575879283334,5.27665113558243
Merged-chr1-180432055-4,chr1,180431878,180432239,+,990.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_001081227),TTS (NM_001081227),51446,NM_001081227,381310,Mm.44791,NM_001081227,ENSMUSG00000053963,Stum,6330403A02Rik|Gm10001|R75555,mechanosensory transduction mediator,protein-coding,14.48,18.26,18.17,13.67,27.87,35.89,31.89,17.64,0,0,0,0,0,0,0,0,56.14,79.83,21.24,40.37,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.98220940597479,4.55775475708419,5.44189722268503,4.87684129018875
Merged-chr5-92491013-4,chr5,92490866,92491188,+,990.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007644, intron 1 of 11)","intron (NM_007644, intron 1 of 11)",14630,NM_007644,12492,Mm.297964,NM_007644,ENSMUSG00000029426,Scarb2,9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85,"scavenger receptor class B, member 2",protein-coding,35.16,35.56,39.71,32.68,28.88,32.85,21.26,15.44,0,0,0,0,0,0,0,0,96.43,137.99,16.21,69.66,53.64,0,0,0,0,0,0,0,0,0,0,Equal basal,5.09502340640333,4.35088817910717,6.21289807206642,5.18039734092019
Merged-chr18-60978104-4,chr18,60977811,60978271,+,990.06665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177407, intron 15 of 17)","intron (NM_177407, intron 15 of 17)",14487,NM_001286809,12322,Mm.131530,NM_009792,ENSMUSG00000024617,Camk2a,CaMKII|R74975|mKIAA0968,calcium/calmodulin-dependent protein kinase II alpha,protein-coding,23.17,26.91,19.52,40.92,35.95,25.27,38.47,23.63,0,0,0,0,0,0,0,0,95.11,99.22,32.98,63.15,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.69219192120333,4.69590101211026,5.96874803183908,5.53840531464878
Merged-chr13-51853518-4,chr13,51853358,51853790,+,989.758301,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,6899,NM_011817,23882,Mm.281298,NM_011817,ENSMUSG00000021453,Gadd45g,AI327420|C86281|CR6|DDIT2|OIG37,growth arrest and DNA-damage-inducible 45 gamma,protein-coding,26.06,32.04,22.21,13.23,23.83,41.45,27.84,26.78,0,0,0,0,0,0,0,0,73.98,92.38,22.92,74.22,80.08,0,0,0,0,0,0,0,0,0,0,Equal basal,4.44195968421581,4.65212926609628,5.7398120603908,5.55933404459444
Merged-chr5-66038379-4,chr5,66038215,66038572,+,989.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_139065, intron 3 of 6)","intron (NM_139065, intron 3 of 6)",-34108,NR_027961,231253,Mm.436542,NM_177679,ENSMUSG00000054598,9130230L23Rik,-,RIKEN cDNA 9130230L23 gene,ncRNA,19.86,35.88,24.9,20.42,32.51,18.7,38.98,20.48,0,0,0,0,0,0,0,0,81.9,70.71,19,61.85,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,4.58094351710695,4.49647771363034,5.62333460648096,5.13443736703711
Merged-chr13-101540153-6,chr13,101539951,101540296,+,989.055542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-142543,NR_046187,78136,Mm.399065,NR_046187,NA,4922502H24Rik,-,RIKEN cDNA 4922502H24 gene,ncRNA,16.96,27.87,17.84,22.61,21.61,28.3,26.32,12.29,36.9,0,36.37,22.82,19.36,26.5,66.48,41.2,61.43,88.95,17.89,38.41,46.09,264.18,269.66,119.62,226.6,234.1,251.29,349.02,171.43,164.61,473.8,Equal basal,4.34205498733672,4.19804629029839,5.58171677699781,4.87586169823935
Merged-chr18-6459584-8,chr18,6459410,6459783,+,988.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_007935, intron 2 of 13)","intron (NM_007935, intron 2 of 13)",31050,NR_035446,100316773,NA,NR_035446,ENSMUSG00000084514,Mir1893,Mirn1893|mmu-mir-1893,microRNA 1893,ncRNA,7.45,25.31,11.78,31.63,47.66,31.34,44.55,41.28,66.42,198.47,109.11,190.21,268.6,260.57,327.98,161.06,96.43,117.46,29.06,60.55,75.55,855.62,579.77,263.87,683.47,503.67,819.58,580.24,267.42,755.04,431.99,Equal basal,4.01935242275384,5.11727014700049,6.09833688014332,5.54699339663827
Merged-chr10-10287633-4,chr10,10287325,10287818,+,988.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,184743,NM_001127353,215772,Mm.246573,NM_172547,ENSMUSG00000050994,Adgb,9130014G24Rik,androglobin,protein-coding,42.61,30.76,27.6,43.46,26.66,19.71,25.31,20.17,0,0,0,0,0,0,0,0,107.66,131.15,16.77,31.9,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,5.08904552659998,4.30417896348579,6.25508389686073,4.76761286903545
Merged-chr11-86596357-3,chr11,86596087,86596534,+,988,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001356531, intron 10 of 11)","intron (NM_001356531, intron 10 of 11)",-12152,NR_029738,387140,NA,NR_029738,ENSMUSG00000065455,Mir21a,Mir21|Mirn21|mmu-mir-21|mmu-mir-21a,microRNA 21a,ncRNA,4.14,11.53,7.07,3.24,38.17,55.6,29.87,14.18,0,0,0,0,0,0,0,0,34.35,37.63,11.18,57.95,61.2,0,0,0,0,0,0,0,0,0,0,High basal,2.67123013407094,4.71853949116046,4.57349395649132,4.98591496250433
Merged-chr9-118665684-4,chr9,118665513,118665842,+,987.650024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133721, intron 8 of 27)","intron (NM_133721, intron 8 of 27)",-46015,NM_001113514,104099,Mm.335520,NM_133721,ENSMUSG00000039115,Itga9,(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e,integrin alpha 9,protein-coding,32.27,19.86,11.78,21.12,32.51,33.86,32.4,18.27,0,0,0,0,0,0,0,0,78.6,122.03,16.77,54.04,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.29093430415708,4.61137104679762,5.98021805093526,5.18257288759076
Merged-chr2-83742354-4,chr2,83742206,83742525,+,987.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008402, intron 2 of 29)",Charlie24|DNA|hAT-Charlie,17968,NM_008402,16410,Mm.227,NM_008402,ENSMUSG00000027087,Itgav,1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik,integrin alpha V,protein-coding,14.48,38.76,19.18,30.23,27.06,43.47,37.46,16.07,0,0,0,0,0,0,0,0,70.67,115.18,16.21,59.9,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.52855592270649,4.6421008138871,5.86393325897226,5.23094465591379
Merged-chr10-93946092-8,chr10,93945877,93946285,+,987.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,17782,NR_029764,723908,NA,NR_029764,ENSMUSG00000065607,Mir331,Mirn331|mmu-mir-331,microRNA 331,ncRNA,3.31,11.53,13.8,25.06,113.9,115.74,114.91,63.65,54.12,288.68,204.58,174.99,498.49,578.54,593.91,614.29,50.86,82.11,60.92,162.12,154.12,867.45,489.89,323.68,705.4,553.33,1600.5,1457.14,819.42,1288.23,1658.29,High basal,3.49512680672712,6.37490677651471,5.39227221297115,6.70209699092952
Merged-chr7-45099020-7,chr7,45098850,45099158,+,986.952393,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357117, intron 4 of 6)",B3|SINE|B2,4818,NM_001357117,14132,Mm.3303,NM_010189,ENSMUSG00000003420,Fcgrt,FcRn,"Fc receptor, IgG, alpha chain transporter",protein-coding,30.61,18.58,14.81,19.01,9.29,5.56,22.27,8.19,150.06,112.77,68.19,133.14,87.11,141.32,124.1,119.86,54.16,98.08,4.47,17.58,19.64,520.47,426.96,253.32,222.95,333.41,432.99,383.92,246.85,193.23,292.64,Low basal,4.30039277002501,3.18171280163995,5.56213902877175,3.51418694258012
Merged-chr14-19968895-4,chr14,19968758,19969053,+,986.6875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001285908, intron 1 of 3)",B1F|SINE|Alu,7788,NM_001285911,14702,Mm.41737,NM_010315,ENSMUSG00000043004,Gng2,-,"guanine nucleotide binding protein (G protein), gamma 2",protein-coding,22.75,9.93,28.61,22.34,22.01,33.86,16.2,17.33,0,0,0,0,0,0,0,0,66.71,93.52,20.12,50.78,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.25120918306524,4.21709066280829,5.67536228846622,5.21058253208488
Merged-chr11-93963208-4,chr11,93962998,93963377,+,986.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008704, intron 3 of 4)","intron (NM_008704, intron 3 of 4)",5334,NM_008704,18102,Mm.439702,NM_008704,ENSMUSG00000037601,Nme1,AL024257|NDPK-A|NM23-M1|NM23A,NME/NM23 nucleoside diphosphate kinase 1,protein-coding,16.55,21.78,10.1,16.12,44.43,56.1,57.71,38.44,19.68,0,27.28,0,14.52,0,0,0,61.43,45.62,40.24,68.36,68.75,0,8.99,0,29.24,0,0,0,0,0,0,High basal,3.96078646070241,5.36189676321554,5.11343519494068,5.71295280708383
Merged-chr9-105123582-2,chr9,105123397,105123745,+,986.450012,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,ORR1B1|LTR|ERVL-MaLR,8234,NM_029385,75686,Mm.305810,NM_029385,ENSMUSG00000032565,Nudt16,2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783,nudix (nucleoside diphosphate linked moiety X)-type motif 16,protein-coding,7.03,10.25,4.38,5.26,4.64,2.53,3.04,2.21,63.96,22.55,63.65,49.45,16.94,26.5,0,41.2,30.38,26.23,1.68,3.91,5.29,216.86,179.77,91.48,138.89,269.57,11.6,39.26,24,60.83,41.81,Equal basal,2.7634890607811,1.69828263627195,4.24243395607993,1.97631092182553
Merged-chr19-11929732-5,chr19,11929456,11929955,+,986.371399,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172635, intron 9 of 18)","intron (NM_172635, intron 9 of 18)",5977,NR_105960,102465601,NA,NR_105960,ENSMUSG00000104979,Mir6994,mmu-mir-6994,microRNA 6994,ncRNA,0.83,0,0.67,1.93,25.24,36.9,38.98,37.49,14.76,22.55,63.65,3.8,128.25,61.83,230.47,250.96,11.89,19.39,19.56,74.87,84.62,248.41,251.68,207.58,325.29,241.19,800.25,872.54,699.42,787.25,1156.62,High basal,0.768358152095292,4.86059803656822,3.41094848742811,5.51590754569993
Merged-chr9-48444090-3,chr9,48443935,48444264,+,985.222229,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10245,NR_026561,667933,Mm.491076,NR_026561,NA,Gm8884,EG667933,predicted gene 8884,ncRNA,4.14,7.05,4.71,5.87,25.44,28.81,19.74,21.74,0,0,0,0,0,0,0,0,27.74,46.76,13.97,48.18,49.11,0,0,0,0,0,0,0,0,0,0,High basal,2.5795948400022,4.34929530976222,4.57617445481794,4.89766058915194
Merged-chr12-85712797-4,chr12,85712567,85713015,+,984.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,26071,NM_016767,53314,Mm.6672,NM_016767,ENSMUSG00000034266,Batf,B-ATF|SFA-2,"basic leucine zipper transcription factor, ATF-like",protein-coding,27.72,33,12.12,19.63,36.15,32.85,32.9,33.08,0,0,0,0,0,0,0,0,58.12,115.18,28.51,61.2,82.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.39988494206944,4.8406091192085,5.72589582580304,5.58361454203572
Merged-chr17-27914970-2,chr17,27914846,27915080,+,984.549988,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_181413, intron 1 of 24)","intron (NM_181413, intron 1 of 24)",5657,NM_181413,224650,Mm.32556,NM_181413,ENSMUSG00000024219,Anks1,Anks1a|mKIAA0229,ankyrin repeat and SAM domain containing 1,protein-coding,6.21,0.96,1.68,6.13,0.2,3.54,1.01,1.89,24.6,54.13,4.55,0,0,0,0,26.22,23.78,29.65,1.68,0.65,0.76,323.32,274.16,116.1,201.02,212.82,30.93,74.17,17.14,50.1,41.81,Equal basal,1.82593927320711,1.04594222010912,4.1573566864196,0.9708711240842
Merged-chr17-73971546-4,chr17,73971398,73971705,+,984.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-21355,NM_011723,22436,Mm.11223,NM_011723,ENSMUSG00000024066,Xdh,XO|Xor|Xox-1|Xox1,xanthine dehydrogenase,protein-coding,15.72,33.96,27.6,40.66,40.39,55.6,42.01,44.74,0,0,0,0,0,0,0,0,91.81,114.04,37.45,87.89,95.19,0,0,0,0,0,0,0,0,0,0,Equal basal,4.75926935298705,5.26675521892182,6.04241220399677,5.95152591234836
Merged-chr13-17983359-4,chr13,17983230,17983488,+,984.049988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,9992,NM_025904,67008,Mm.252918,NM_025904,ENSMUSG00000075054,Yae1d1,1600012F09Rik,Yae1 domain containing 1,protein-coding,19.03,23.07,9.42,14.98,34.73,21.73,24.8,11.66,0,0,0,0,0,0,0,0,44.91,61.58,23.48,49.48,55.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97841670905442,4.22036795450818,5.10274809260618,5.21064493695942
Merged-chr16-87716561-4,chr16,87716383,87716742,+,983.900024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007520, intron 2 of 4)","intron (NM_007520, intron 2 of 4)",17608,NM_007520,12013,Mm.26147,NM_007520,ENSMUSG00000025612,Bach1,6230421P05Rik|AI323795,"BTB and CNC homology 1, basic leucine zipper transcription factor 1",protein-coding,35.16,11.85,22.55,32.25,37.56,30.33,36.95,28.67,0,0,0,0,0,0,0,0,85.21,123.17,26.27,50.13,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.50848997156527,4.82362538769689,6.04406940410703,5.29402158146709
Merged-chr3-121370597-4,chr3,121370415,121370748,+,983.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-55960,NM_028044,71994,Mm.275555,NM_028044,ENSMUSG00000053931,Cnn3,1600014M03Rik|C85854|Calpo3,"calponin 3, acidic",protein-coding,18.62,19.54,18.17,22.26,32.51,22.24,26.83,14.81,0,0,0,0,0,0,0,0,64.73,101.5,19,41.67,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2583336068636,4.32093439100866,5.71207867988348,5.00607495853619
Merged-chr4-138083319-7,chr4,138083096,138083587,+,983.690491,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001355700, intron 2 of 30)","intron (NM_001355700, intron 2 of 30)",55177,NR_126429,73563,Mm.444294,NR_126429,ENSMUSG00000084804,1700095J12Rik,-,RIKEN cDNA 1700095J12 gene,ncRNA,23.99,17.94,19.52,21.47,42,38.92,35.43,24.89,27.06,121.79,109.11,49.45,125.83,154.57,208.31,202.27,75.96,82.11,13.97,76.18,85.37,299.66,184.27,133.69,233.91,482.39,324.74,388.28,301.71,322.06,438.96,Equal basal,4.34018894077902,4.88536968848711,5.67529212183803,5.3732589851268
Merged-chr3-121602210-4,chr3,121602007,121602478,+,983.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,41243,NR_036456,100503044,Mm.65320,NM_176992,ENSMUSG00000044522,A730020M07Rik,-,RIKEN cDNA A730020M07 gene,ncRNA,19.03,27.55,16.49,23.4,39.18,51.05,46.57,41.28,0,0,0,0,0,0,0,0,52.84,116.32,25.71,92.45,117.1,0,0,0,0,0,0,0,0,0,0,Equal basal,4.37270561586412,5.23148996437012,5.66581519816391,5.89704974013171
Merged-chrX-117770146-3,chrX,117769985,117770300,+,983.233337,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,MMERGLN-int|LTR|ERV1,-657085,NM_001142750,100039551,Mm.272850,NM_001142750,ENSMUSG00000100194,Tgif2lx2,-,"TGFB-induced factor homeobox 2-like, X-linked 2",protein-coding,16.96,16.34,16.49,16.39,19.99,31.84,25.31,20.48,17.22,0,31.82,19.02,0,0,26.59,0,48.22,79.83,21.24,39.06,47.6,212.92,184.27,73.88,263.15,227.01,0,0,3.43,17.89,0,Equal basal,4.01764474202596,4.37076173834489,5.33495650849611,4.97840860614445
Merged-chr2-129175841-4,chr2,129175690,129176003,+,983.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,4827,NR_045264,100048701,Mm.428544,NR_045264,ENSMUSG00000084826,AI847159,-,expressed sequence AI847159,ncRNA,21.1,28.51,12.45,23.4,36.35,34.37,26.32,21.11,0,0,0,0,0,0,0,0,64.73,80.97,19,78.13,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31207006283026,4.63590353308235,5.55226283323577,5.36399872579767
Merged-chr4-139236244-8,chr4,139236051,139236421,+,983.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001271405, intron 1 of 8)","intron (NM_001271405, intron 1 of 8)",42125,NM_001271405,12345,Mm.2945,NM_009798,ENSMUSG00000028745,Capzb,1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1,"capping protein (actin filament) muscle Z-line, beta",protein-coding,9.93,11.85,10.77,14.81,24.23,37.4,65.81,31.51,125.46,54.13,127.29,167.38,399.27,459.3,465.38,337.11,64.73,61.58,25.71,69.01,59.68,843.79,782.02,608.66,888.14,1064.09,1619.83,1204.1,970.27,1281.07,1616.49,High basal,3.56856735186593,4.98885519890641,5.35975109433422,5.44024142750017
Merged-chr13-85398945-3,chr13,85398775,85399131,+,983,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-109467,NM_145452,218397,Mm.259653,NM_145452,ENSMUSG00000021549,Rasa1,Gap|RasGAP|Rasa,RAS p21 protein activator 1,protein-coding,0,1.92,2.02,2.45,2.63,0,6.58,6.62,14.76,40.6,0,38.04,41.14,0,0,59.93,31.04,25.09,1.68,5.21,13.6,591.44,503.37,341.27,427.62,305.04,498.71,693.67,291.42,644.11,487.73,Equal basal,1.19489560886834,1.71335866079745,4.22731538497188,2.46971527212875
Merged-chr19-17335040-7,chr19,17334820,17335341,+,982.928589,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_010265, intron 1 of 2)","intron (NM_010265, intron 1 of 2)",4425,NM_001136484,14537,Mm.244825,NM_010265,ENSMUSG00000038843,Gcnt1,5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT,"glucosaminyl (N-acetyl) transferase 1, core 2",protein-coding,21.1,11.21,11.11,26.37,61.19,51.05,52.14,27.41,152.52,162.38,159.12,49.45,452.51,211.99,518.56,505.67,56.14,75.27,33.54,59.25,103.5,528.35,530.33,221.65,592.1,418.54,792.52,615.14,445.71,722.84,947.6,High basal,3.99359520951405,5.27806775457094,5.40041543315209,5.75297170771482
Merged-chr17-7897957-4,chr17,7897774,7898143,+,982.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28042,NM_145968,72536,Mm.119680,NM_145968,ENSMUSG00000033450,Tagap,2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1,T cell activation Rho GTPase activating protein,protein-coding,21.93,23.39,15.14,22.43,28.47,29.32,21.26,21.74,0,0,0,0,0,0,0,0,61.43,70.71,19.56,46.88,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31060344347974,4.43133645651641,5.41979386163888,5.13711200763499
Merged-chr17-17583651-7,chr17,17583350,17583932,+,982.047607,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172827, intron 1 of 17)",ORR1E|LTR|ERVL-MaLR,40848,NM_172827,240028,Mm.328807,NM_172827,ENSMUSG00000023845,Lnpep,2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165,leucyl/cystinyl aminopeptidase,protein-coding,37.23,22.11,22.21,39.61,44.43,36.39,54.16,28.99,29.52,108.26,81.83,7.61,48.4,57.41,53.19,22.47,108.98,147.12,22.92,67.71,83.86,555.95,391.01,232.21,314.32,432.73,432.99,239.95,195.43,343.53,362.32,Equal basal,4.81811462431873,5.08842625367483,6.34557883323882,5.5377776712204
Merged-chr3-138118944-8,chr3,138118749,138119107,+,981.979187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001355052, intron 7 of 21)","intron (NM_001355052, intron 7 of 21)",12725,NM_008642,17777,Mm.2941,NM_008642,ENSMUSG00000028158,Mttp,1810043K16Rik|MTP,microsomal triglyceride transfer protein,protein-coding,13.65,21.14,14.47,25.59,25.65,27.29,21.77,6.93,150.06,275.15,213.67,163.58,159.71,278.23,199.45,11.24,50.2,76.41,16.21,19.53,24.18,1167.11,1240.44,612.18,1059.92,1262.72,877.57,606.41,270.85,594.02,592.25,Equal basal,4.14637591735649,3.99307409263813,5.33232877147044,4.2233235786537
Merged-chr17-26513312-6,chr17,26513004,26513518,+,981.891663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4789,NM_013642,19252,Mm.239041,NM_013642,ENSMUSG00000024190,Dusp1,3CH134|MKP1|Ptpn16|U19515|erp|mkp-1,dual specificity phosphatase 1,protein-coding,21.51,22.43,23.22,26.81,22.21,13.14,27.33,24.58,46.74,67.66,113.65,102.71,72.6,61.83,44.32,93.64,73.32,93.52,15.09,45.57,55.15,370.64,489.89,218.13,135.23,184.44,402.06,506.07,243.42,407.94,390.19,Equal basal,4.51181047665894,4.20940550682781,5.74214463938733,4.96123874560639
Merged-chr1-172566478-6,chr1,172566169,172566693,+,981.81665,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1F|LTR|ERVL-MaLR,6525,NR_027644,240916,Mm.71940,NM_177723,ENSMUSG00000049598,Vsig8,A030011M19|EG240916,V-set and immunoglobulin domain containing 8,protein-coding,0.83,3.84,1.01,0.18,106.63,164.77,83.02,35.92,24.6,27.06,27.28,0,244.4,335.64,274.79,213.5,50.2,72.99,53.66,155.61,166.21,149.83,224.72,218.13,135.23,163.16,1043.8,1252.09,733.7,880.29,1191.46,High basal,0.972961985554661,6.16290200098493,5.30006140456014,6.65822472922124
Merged-chr17-88435879-4,chr17,88435706,88436019,+,981.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4842,NM_001355743,14236,Mm.112824,NM_180974,ENSMUSG00000034998,Foxn2,3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF,forkhead box N2,protein-coding,29.79,40.37,30.96,25.76,31.1,38.92,26.83,21.74,0,0,0,0,0,0,0,0,102.38,103.78,15.65,43.62,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,4.91952246626167,4.63088190901413,6.05297513791445,4.76221887448621
Merged-chr19-43771652-4,chr19,43771494,43771778,+,981,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1M4|LINE|L1,-10672,NM_013806,12780,Mm.39054,NM_013806,ENSMUSG00000025194,Abcc2,AI173996|Abc30|Cmoat|Mrp2|cMRP,"ATP-binding cassette, sub-family C (CFTR/MRP), member 2",protein-coding,29.79,27.23,21.88,26.64,28.88,27.29,28.85,11.66,0,0,0,0,0,0,0,0,86.53,79.83,21.8,42.97,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66374572917552,4.29293805710325,5.74780357391844,4.98824725222941
Merged-chr18-4304167-3,chr18,4304003,4304376,+,980.777771,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,48764,NM_007746,26410,Mm.3275,NM_007746,ENSMUSG00000024235,Map3k8,Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT,mitogen-activated protein kinase kinase kinase 8,protein-coding,4.96,5.77,6.39,15.77,25.44,20.22,10.63,17.33,0,0,0,0,0,0,0,0,66.05,118.61,16.21,50.13,34,0,0,0,0,0,0,0,0,0,0,Equal basal,2.97305304622643,3.9452859402176,5.83688955327129,4.81360087524468
Merged-chr15-97182719-4,chr15,97182543,97182895,+,980.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15475,NR_155279,102635594,Mm.392594,NR_155278,ENSMUSG00000116295,Gm32885,-,"predicted gene, 32885",ncRNA,31.44,37.16,25.91,26.29,40.79,19.21,24.8,18.9,0,0,0,0,0,0,0,0,73.98,127.73,22.36,59.9,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.84976152763189,4.41563355445628,5.96974107349838,5.30228012775073
Merged-chr5-20936058-4,chr5,20935890,20936227,+,980.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001080977, intron 1 of 7)","intron (NM_001080977, intron 1 of 7)",-14931,NR_030699,320770,Mm.491217,NR_030699,ENSMUSG00000101013,A630072M18Rik,Aptr,RIKEN cDNA A630072M18 gene,ncRNA,19.03,18.9,14.81,24.27,21.41,27.29,10.12,16.07,0,0,0,0,0,0,0,0,66.05,92.38,10.06,40.37,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.22084363867121,3.96289637373771,5.65964802882758,4.57115848582212
Merged-chr14-76194373-4,chr14,76194222,76194535,+,980.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-57084,NR_152108,72893,Mm.233565,NR_152108,NA,2900040C04Rik,-,RIKEN cDNA 2900040C04 gene,ncRNA,34.34,62.47,40.72,30.93,47.25,42.46,66.82,16.07,0,0,0,0,0,0,0,0,93.79,171.07,36.89,68.36,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,5.2728289902799,5.03047447220927,6.34632741149125,5.67702846432329
Merged-chr1-177470269-4,chr1,177470061,177470492,+,980.1875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,24455,NM_013915,30928,Mm.330700,NM_013915,ENSMUSG00000063659,Zbtb18,RP58|Zfp238|Znf238.|zfp-238,zinc finger and BTB domain containing 18,protein-coding,15.72,24.67,17.16,20.24,44.02,42.46,52.64,23.32,0,0,0,0,0,0,0,0,107.66,101.5,25.71,86.59,91.41,0,0,0,0,0,0,0,0,0,0,Equal basal,4.2291967946092,5.0566370942061,6.07305092499318,5.74857964462535
Merged-chr18-78815734-2,chr18,78815536,78815904,+,980,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_053099, intron 4 of 5)","intron (NM_053099, intron 4 of 5)",-218770,NM_207651,27411,Mm.44158,NM_030683,ENSMUSG00000024552,Slc14a2,UT-A1|UT-A3,"solute carrier family 14 (urea transporter), member 2",protein-coding,0,1.28,1.35,1.58,1.01,3.54,2.53,3.15,2.46,27.06,86.38,41.85,14.52,4.42,26.59,0,31.04,27.37,1.68,3.26,0,279.95,395.5,235.72,259.5,312.13,100.51,47.99,20.57,25.05,167.22,Equal basal,0.914776429946498,1.47719397587115,4.28604844684851,1.17234579503355
Merged-chr1-13295723-5,chr1,13295561,13295888,+,979.166626,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008678, intron 1 of 22)",Tigger5|DNA|TcMar-Tigger,76705,NM_001302702,17978,Mm.2537,NM_008678,ENSMUSG00000005886,Ncoa2,D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75,nuclear receptor coactivator 2,protein-coding,7.03,3.2,6.06,16.21,33.72,20.22,33.41,20.8,17.22,45.11,18.18,95.1,29.04,61.83,0,22.47,45.57,53.6,15.09,37.11,41.55,216.86,161.8,105.55,95.03,85.13,220.36,174.51,72,207.55,55.74,High basal,2.90085706662957,4.50674603763342,5.01585985250673,4.73338520603502
Merged-chr7-55852562-4,chr7,55852422,55852731,+,979,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011370, intron 1 of 30)",MTD|LTR|ERVL-MaLR,10505,NM_001164661,20430,Mm.37249,NM_011370,ENSMUSG00000030447,Cyfip1,E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1,cytoplasmic FMR1 interacting protein 1,protein-coding,19.86,24.67,21.54,10.87,19.79,22.24,32.4,12.92,0,0,0,0,0,0,0,0,52.84,85.53,19.56,46.88,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.18525169200069,4.1769561326309,5.44795528032525,5.07449841107968
Merged-chr13-92939240-3,chr13,92939081,92939449,+,978.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,94478,NM_001162945,382793,Mm.296770,NM_001162945,ENSMUSG00000021704,Mtx3,4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514,metaxin 3,protein-coding,0.41,1.92,2.69,1.4,33.12,39.93,25.31,19.22,0,0,27.28,15.22,31.46,13.25,26.59,44.95,11.23,7.98,26.27,69.66,67.24,19.71,4.49,0,40.2,42.56,166.24,161.42,133.71,236.17,83.61,High basal,1.13940507731301,4.60521758232204,2.81664277882688,5.51077293822558
Merged-chr3-81263022-6,chr3,81262804,81263218,+,978.388916,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1E|LTR|ERVL-MaLR,226595,NM_001357746,54635,Mm.331089,NM_019971,ENSMUSG00000028019,Pdgfc,1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E,"platelet-derived growth factor, C polypeptide",protein-coding,7.45,2.56,3.37,4.03,34.94,63.68,36.45,26.47,41.82,54.13,63.65,0,96.79,97.16,146.26,127.35,23.78,33.07,20.12,54.04,54.4,173.49,287.64,383.49,244.88,127.69,502.57,663.13,411.42,529.6,487.73,High basal,2.26635421562508,5.03260571256007,4.23184694412286,5.16737247513548
Merged-chr6-83017275-4,chr6,83017128,83017409,+,977.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_033079, intron 7 of 9)",L3|LINE|CR1,16203,NM_010070,13448,Mm.156,NM_010070,ENSMUSG00000068335,Dok1,AW557123|p62DOK,docking protein 1,protein-coding,20.27,20.5,9.42,14.11,19.18,20.22,27.84,12.92,0,0,0,0,0,0,0,0,44.91,67.29,14.53,43.62,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,3.9322252630076,4.07195369259147,5.16488900464888,4.8619282763914
Merged-chr13-15850581-4,chr13,15850352,15850920,+,977.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_155430, intron 3 of 3)",Arthur1|DNA|hAT-Tip100,43393,NR_046131,328190,Mm.446957,NR_046131,ENSMUSG00000113338,A530046M15Rik,A530046M15,RIKEN cDNA A530046M15 gene,ncRNA,27.72,25.95,34.67,36.1,65.83,43.97,83.02,58.6,0,0,0,0,0,0,0,0,97.09,145.98,31.3,132.82,197.18,0,0,0,0,0,0,0,0,0,0,Equal basal,4.88506790588452,5.69136794396526,6.25781327610239,6.40965015969959
Merged-chr1-127219330-7,chr1,127219192,127219497,+,977.142883,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_145128, intron 1 of 17)",MIRc|SINE|MIR,14358,NM_145128,107895,Mm.214682,NM_145128,ENSMUSG00000036155,Mgat5,4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV,mannoside acetylglucosaminyltransferase 5,protein-coding,18.2,17.94,21.2,33.03,68.46,76.32,65.3,47.58,22.14,76.68,104.56,0,58.08,83.91,48.75,123.61,89.83,112.9,46.39,98.31,101.99,398.24,319.1,140.73,226.6,468.2,351.8,379.55,188.57,304.16,494.7,High basal,4.41858853166521,5.7367360533504,6.01977230212894,6.1385522583801
Merged-chr18-70415612-4,chr18,70415472,70415748,+,976.847229,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MIRb|SINE|MIR,-56844,NM_029019,170461,Mm.83623,NM_029019,ENSMUSG00000079608,Stard6,1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424,StAR-related lipid transfer (START) domain containing 6,protein-coding,0.83,1.28,4.38,1.23,21,16.68,34.42,13.55,0,54.13,18.18,26.63,101.63,163.41,84.21,112.37,5.94,10.26,22.92,31.9,49.86,47.32,13.48,7.04,0,42.56,351.8,253.04,137.14,218.28,139.35,High basal,1.34190185781642,4.1265086008969,2.57610402500152,4.94166211300445
Merged-chr13-98957937-4,chr13,98957798,98958078,+,976.75,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,26627,NM_027064,69382,Mm.45466,NM_027064,ENSMUSG00000045022,1700024P04Rik,H2bl1|Subh2bv,RIKEN cDNA 1700024P04 gene,protein-coding,0.83,0,0,0.09,38.77,27.29,28.35,28.99,39.36,4.51,22.73,0,319.42,181.07,221.61,475.7,1.98,3.42,17.89,28,19.64,23.66,13.48,7.04,40.2,0,344.07,440.63,264,422.25,487.73,High basal,0.200027824265078,4.71923644486684,1.41026996595676,4.33887149225962
Merged-chr16-70329690-4,chr16,70329498,70329864,+,976.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028803, intron 1 of 15)","intron (NM_028803, intron 1 of 15)",15732,NM_028803,74185,Mm.396102,NM_028803,ENSMUSG00000022707,Gbe1,2310045H19Rik|2810426P10Rik|D16Ertd536e,"glucan (1,4-alpha-), branching enzyme 1",protein-coding,17.38,13.13,35.34,22.96,44.02,47.01,78.97,34.66,36.9,67.66,0,0,33.88,66.25,0,0,99.08,111.76,44.71,100.26,135.99,0,0,0,3.65,0,0,0,0,0,0,Equal basal,4.34473368464282,5.37002356350368,6.08222167220499,6.26712424766878
Merged-chr3-55293569-4,chr3,55293433,55293726,+,976.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357475, intron 3 of 16)","intron (NM_001357475, intron 3 of 16)",51215,NM_001357466,13175,Mm.393242,NM_019978,ENSMUSG00000027797,Dclk1,1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369,doublecortin-like kinase 1,protein-coding,21.1,12.81,14.47,22.43,20.6,26.28,29.36,23.95,0,0,0,0,0,0,0,0,48.22,72.99,17.33,52.74,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,4.08306639590223,4.43372561792285,5.27180357067968,5.09316415149344
Merged-chr3-54723978-4,chr3,54723824,54724217,+,975.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001358017, intron 22 of 24)","intron (NM_001358017, intron 22 of 24)",11344,NM_027148,69639,Mm.29253,NM_027148,ENSMUSG00000027752,Exosc8,2310032N20Rik|CIP3|mKIAA4013,exosome component 8,protein-coding,28.55,26.27,28.61,32.16,24.64,30.33,24.3,23.63,0,0,0,0,0,0,0,0,102.38,120.89,12.3,52.09,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.79458773478528,4.47031768946899,6.16129693439391,4.86868304783978
Merged-chr11-26637291-7,chr11,26636976,26637499,+,975.890503,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MTE2a|LTR|ERVL-MaLR,-43317,NM_001252447,69922,Mm.285351,NM_027260,ENSMUSG00000064090,Vrk2,2810003O05Rik|AI447698,vaccinia related kinase 2,protein-coding,10.76,13.46,15.82,23.75,44.23,25.27,33.92,29.3,73.8,36.09,27.28,72.28,99.21,150.16,203.88,176.05,47.56,70.71,11.74,36.46,86.88,256.29,130.34,137.21,233.91,347.6,688.14,475.53,260.57,472.35,383.22,Equal basal,3.92920696207454,4.79366015899327,5.23979040467302,4.95675944150221
Merged-chr10-60259892-4,chr10,60259715,60260059,+,975.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-17741,NM_001146123,19156,Mm.29978,NM_011179,ENSMUSG00000004207,Psap,AI037048|SGP-1,prosaposin,protein-coding,19.44,11.53,13.8,16.04,38.77,26.28,21.77,17.33,0,0,0,0,0,0,0,0,89.17,70.71,20.12,60.55,74.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.88689236513852,4.42386085467746,5.68366850282571,5.36578495225329
Merged-chr4-149890109-3,chr4,149889898,149890303,+,975.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,64906,NM_029035,74646,Mm.30,NM_029035,ENSMUSG00000039911,Spsb1,1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1,splA/ryanodine receptor domain and SOCS box containing 1,protein-coding,9.1,11.85,8.08,12.53,12.52,21.23,11.14,6.62,0,0,0,0,0,0,0,0,31.7,69.57,10.06,20.18,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.39015873461256,3.42585987790056,4.94598465092884,4.28672638966433
Merged-chr9-35187698-8,chr9,35187527,35187965,+,975.537476,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"3' UTR (NM_001177847, exon 7 of 7)","3' UTR (NM_001177847, exon 7 of 7)",-11759,NM_027030,69305,Mm.229110,NM_027030,ENSMUSG00000032040,Dcps,1700001E16Rik|AA408441,"decapping enzyme, scavenger",protein-coding,34.75,63.43,37.02,28.13,67.85,56.61,70.36,27.41,93.48,58.64,50.01,95.1,87.11,79.49,146.26,78.66,103.7,148.26,33.54,74.87,119.37,343.04,328.09,204.06,358.18,305.04,228.09,248.67,253.71,150.29,355.35,Equal basal,5.22465708382096,5.46216803200362,6.31569136632361,5.93103209046146
Merged-chr12-17455310-8,chr12,17454889,17455569,+,975.4823,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L2c|LINE|L2,-89644,NM_013614,18263,Mm.34102,NM_013614,ENSMUSG00000011179,Odc1,ODC,"ornithine decarboxylase, structural 1",protein-coding,23.58,25.63,37.69,37.15,10.9,17.18,13.16,8.19,216.49,266.13,372.79,289.11,145.19,70.66,168.42,408.28,153.9,174.49,6.15,30.6,31.73,1691.52,1739.32,1066.04,1487.55,1943.73,838.91,907.44,562.28,865.97,634.05,Low basal,4.87125006851791,3.44696950771886,6.71358273031458,4.11858738818492
Merged-chr2-83728575-4,chr2,83728418,83728759,+,975.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008402, intron 1 of 29)","intron (NM_008402, intron 1 of 29)",4191,NM_008402,16410,Mm.227,NM_008402,ENSMUSG00000027087,Itgav,1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik,integrin alpha V,protein-coding,26.06,14.42,24.57,31.54,40.39,29.32,40.5,32.77,0,0,0,0,0,0,0,0,66.05,96.94,27.39,65.11,58.17,0,0,0,0,0,0,0,0,0,0,Equal basal,4.49168017933086,4.92442362613423,5.69376986521957,5.43030505598648
Merged-chr7-116625551-4,chr7,116625349,116625765,+,974.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B3A|SINE|B2,121188,NM_001360375,53322,Mm.9901,NM_016773,ENSMUSG00000030659,Nucb2,AI607786|Calnuc|Nefa|Nesfatin-1,nucleobindin 2,protein-coding,18.62,36.52,31.3,38.38,27.06,22.74,34.42,24.58,0,0,0,0,0,0,0,0,95.77,120.89,8.94,43.62,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85418804645601,4.53345971855374,6.11385141797016,4.71671110991057
Merged-chr16-84585173-3,chr16,84585010,84585352,+,974.5,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-94608,NR_040537,78023,Mm.243853,NR_040537,NA,4930529L06Rik,-,RIKEN cDNA 4930529L06 gene,ncRNA,5.38,20.18,4.38,5.61,51.09,23.76,24.8,12.29,12.3,27.06,27.28,3.8,12.1,26.5,26.59,7.49,44.91,94.66,21.24,63.15,81.59,0,0,0,0,0,0,0,0,0,0,High basal,2.91645625742741,4.40316042244747,5.40563608528675,5.45660489079377
Merged-chr5-41627809-6,chr5,41627529,41628042,+,974.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001310589, intron 6 of 6)","intron (NM_001310589, intron 6 of 6)",79906,NM_001310592,100972,Mm.41555,NM_027295,ENSMUSG00000029128,Rab28,2700023P08Rik|AW496496,"RAB28, member RAS oncogene family",protein-coding,14.89,9.61,13.13,22.34,32.92,35.89,48.09,19.22,59.04,108.26,4.55,26.63,4.84,57.41,8.86,48.69,80.58,123.17,19.56,65.11,99.73,350.92,453.93,281.46,328.94,340.51,293.81,318.48,181.71,357.84,501.67,Equal basal,3.8414407213682,4.78145326500947,6.00448458419203,5.52774073704692
Merged-chr19-21946645-8,chr19,21946446,21946845,+,974.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,168305,NM_031997,83921,Mm.329776,NM_031997,ENSMUSG00000024754,Tmem2,-,transmembrane protein 2,protein-coding,19.86,20.18,14.47,22.43,115.31,114.23,74.92,39.7,150.06,58.64,218.22,125.54,280.7,194.32,332.41,310.89,58.79,80.97,54.22,117.84,122.39,768.87,970.78,577,730.98,1142.12,1055.4,1138.66,781.7,880.29,1226.3,High basal,4.21633875409599,6.05810123220738,5.48429751096372,6.38508349731631
Merged-chr3-88465250-4,chr3,88465119,88465389,+,974.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-4072,NM_001163489,20351,Mm.439752,NM_013658,ENSMUSG00000028064,Sema4a,AI132332|SemB|Semab,"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A",protein-coding,22.34,26.91,9.42,15.16,36.55,35.38,34.42,17.33,0,0,0,0,0,0,0,0,68.69,59.3,22.36,63.8,64.22,0,0,0,0,0,0,0,0,0,0,Equal basal,4.09032779236341,4.6692450385109,5.37530876215163,5.37240405871754
Merged-chr1-75188120-4,chr1,75187955,75188266,+,974.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001003917, intron 5 of 15)","intron (NM_001003917, intron 5 of 15)",3900,NM_001003917,245860,Mm.238266,NM_001003917,ENSMUSG00000033124,Atg9a,AU019532|Apg9l1|Atg9|Atg9l1,autophagy related 9A,protein-coding,6.62,15.38,12.45,12.27,25.24,27.8,19.74,24.58,0,0,0,0,0,0,0,0,60.77,76.41,19,50.13,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,3.51365953800384,4.37881729044807,5.46677768576292,5.00469282632359
Merged-chr12-99979718-4,chr12,99979559,99979847,+,974.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001164426, intron 2 of 2)",Lx7|LINE|L1,15204,NM_001164427,217826,Mm.312335,NM_146037,ENSMUSG00000045404,Kcnk13,BB085247|F730021E22Rik|Gm1570|Gm1685,"potassium channel, subfamily K, member 13",protein-coding,44.68,37.16,31.64,49.59,36.96,20.72,90.61,44.43,0,0,0,0,0,0,0,0,121.53,137.99,46.39,79.43,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,5.26939053664714,5.14997190429921,6.37765940229078,5.95744605453839
Merged-chr4-135267105-4,chr4,135266941,135267301,+,972.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013885, intron 1 of 5)","intron (NM_013885, intron 1 of 5)",5639,NM_013885,29876,Mm.257765,NM_013885,ENSMUSG00000037242,Clic4,D0Jmb3|TU-74|mc3s5|mtCLIC,chloride intracellular channel 4 (mitochondrial),protein-coding,18.2,34.6,18.17,19.36,20.6,30.83,27.84,19.85,0,0,0,0,0,0,0,0,75.96,115.18,16.21,65.76,66.48,0,0,0,0,0,0,0,0,0,0,Equal basal,4.41170291472431,4.38827965027752,5.9149819353607,5.25396501876467
Merged-chr7-28444493-2,chr7,28444373,28444606,+,972.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039192, intron 4 of 6)","intron (NM_001039192, intron 4 of 6)",3552,NM_001039192,63986,Mm.194536,NM_022024,ENSMUSG00000060791,Gmfg,0610039G16Rik|2310057N07Rik|AI324845,"glia maturation factor, gamma",protein-coding,4.96,6.41,1.01,3.33,15.35,31.84,10.63,10.08,0,0,0,0,0,0,0,0,32.36,20.53,5.03,33.2,33.24,0,0,0,0,0,0,0,0,0,0,High basal,1.99374806771087,3.74885213607528,4.12201099951754,4.09232740228501
Merged-chr11-96967777-4,chr11,96967625,96967939,+,972.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030220, intron 1 of 6)","intron (NM_030220, intron 1 of 6)",9906,NM_030220,78912,Mm.491183,NM_030220,ENSMUSG00000018678,Sp2,4930480I16Rik|mKIAA0048,Sp2 transcription factor,protein-coding,21.1,14.74,9.42,17.88,20.6,25.27,27.84,19.85,0,0,0,0,0,0,0,0,46.9,75.27,18.44,41.67,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,3.91677513317155,4.32526906623915,5.27400182171264,4.97868861690914
Merged-chr7-142396725-8,chr7,142396572,142396903,+,972,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-8867,NM_009983,13033,Mm.231395,NM_009983,ENSMUSG00000007891,Ctsd,CD|CatD,cathepsin D,protein-coding,22.34,33.96,29.95,16.21,46.45,41.45,31.89,34.03,115.62,85.7,145.48,19.02,162.13,154.57,39.89,134.84,112.95,153.96,29.62,51.43,75.55,382.47,408.99,288.5,486.1,461.1,328.6,370.83,277.71,332.79,383.22,Equal basal,4.58339135727626,5.01901986571889,6.40343388595372,5.4793007616709
Merged-chr18-39763646-4,chr18,39763494,39763855,+,971.799988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9823,NM_011033,18459,Mm.9493,NM_011033,ENSMUSG00000051732,Pabpc2,Pabp|Pabp+|Pabp2,"poly(A) binding protein, cytoplasmic 2",protein-coding,16.96,38.76,20.19,23.83,40.39,50.54,48.59,25.84,0,0,0,0,0,0,0,0,72,108.34,21.24,83.34,93.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.52537216250909,5.09540944779782,5.83356029486205,5.65291625795759
Merged-chr5-122131266-4,chr5,122131121,122131455,+,971.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_183307, intron 2 of 12)","intron (NM_183307, intron 2 of 12)",3605,NM_001289811,330188,Mm.386907,NM_183307,ENSMUSG00000043036,Ccdc63,4921511C16Rik,coiled-coil domain containing 63,protein-coding,18.62,23.07,14.81,21.2,19.99,16.68,25.31,22.37,0,0,0,0,0,0,0,0,50.86,71.85,18.44,36.46,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,4.23421549052929,4.17550188205298,5.29815521764909,4.75454279265922
Merged-chr10-24823968-14,chr10,24823653,24824311,+,971.723145,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_134005, intron 4 of 24)","intron (NM_134005, intron 4 of 24)",12213,NM_134005,209558,Mm.338425,NM_134005,ENSMUSG00000019989,Enpp3,AI876438|CD203c,ectonucleotide pyrophosphatase/phosphodiesterase 3,protein-coding,28.13,60.55,24.9,29.88,55.94,74.3,47.58,26.47,297.67,248.09,381.88,323.35,331.52,490.22,327.98,127.35,97.75,132.29,26.27,75.52,89.9,1518.03,1662.91,721.25,1359.63,1610.32,1152.05,1430.96,822.84,1055.63,1477.13,Equal basal,5.01527156608635,5.34332481940929,6.19253359662171,5.68604946559841
Merged-chr10-83343341-4,chr10,83343193,83343502,+,971.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B4|SINE|B4,-5530,NM_177388,338365,Mm.67073,NM_177388,ENSMUSG00000034591,Slc41a2,A230035L05Rik|SLC41A1-L1,"solute carrier family 41, member 2",protein-coding,12,24.35,12.79,17.17,43.22,34.37,21.77,16.38,0,0,0,0,0,0,0,0,44.25,117.46,19.56,85.29,70.26,0,0,0,0,0,0,0,0,0,0,Equal basal,3.97999551757489,4.54189126007016,5.54838438608477,5.48977451687075
Merged-chr4-141871562-8,chr4,141871375,141871740,+,971.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_025994, intron 1 of 3)","intron (NM_025994, intron 1 of 3)",3363,NM_025994,27984,Mm.395598,NM_025994,ENSMUSG00000040659,Efhd2,2600015J22Rik|AA408606|D4Wsu27e,EF hand domain containing 2,protein-coding,21.93,17.3,6.73,11.48,53.52,57.11,66.31,28.36,177.13,225.53,54.55,57.06,200.85,309.15,270.36,292.16,33.03,51.32,32.98,91.15,67.24,453.44,543.82,197.02,296.05,439.82,1326.02,1195.38,490.28,944.7,1156.62,High basal,3.72451836039073,5.37182361621757,4.76121880305781,5.74464216915177
Merged-chr14-47361936-13,chr14,47361482,47362289,+,971.15387,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,PB1D10|SINE|Alu,-11975,NM_010705,16854,Mm.248615,NM_010705,ENSMUSG00000050335,Lgals3,GBP|L-34|Mac-2|gal3,"lectin, galactose binding, soluble 3",protein-coding,46.33,53.5,62.6,106.73,183.97,145.06,193.87,140.84,418.21,338.3,259.13,232.05,730.79,750.78,567.32,947.66,206.74,248.61,96.7,251.31,296.15,1411.57,1119.1,879.57,1279.22,1546.48,2292.5,2382.03,1487.98,2229.35,2271.44,High basal,5.92137810927935,7.09718154311317,7.1780571126714,7.44352984526249
Merged-chr14-25640604-2,chr14,25640485,25640730,+,970.849976,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_183208, intron 7 of 23)","intron (NM_183208, intron 7 of 23)",37094,NM_001309430,100188919,Mm.473810,NM_001309430,NA,Gm45915,Israa,"predicted gene, 45915",protein-coding,2.48,3.52,4.04,5.17,2.42,3.54,1.01,4.41,0,0,0,0,2.42,0,0,26.22,40.95,82.11,1.68,3.26,6.8,212.92,251.68,105.55,230.26,241.19,50.26,100.34,48,57.25,0,Equal basal,2.13090026131273,1.65620079375533,5.24057811349688,2.00980611164941
Merged-chr4-138024831-3,chr4,138024689,138024963,+,970.466675,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001355699, intron 1 of 32)","intron (NM_001355699, intron 1 of 32)",27001,NM_001355700,230861,Mm.268903,NM_172703,ENSMUSG00000028760,Eif4g3,1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8,"eukaryotic translation initiation factor 4 gamma, 3",protein-coding,20.27,10.25,14.47,16.74,1.62,0,1.01,3.15,22.14,22.55,59.1,102.71,24.2,0,22.16,22.47,44.91,78.69,0.56,1.3,1.51,358.81,449.44,130.18,321.63,347.6,50.26,30.54,3.43,89.46,83.61,Low basal,3.89407539109155,1.01732676974764,5.27510271885065,0.94802564583168
Merged-chrX-157476404-5,chrX,157476160,157476740,+,969.106689,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009214, intron 1 of 10)",L1MB7|LINE|L1,14918,NM_001359185,20603,Mm.18652,NM_009214,ENSMUSG00000071708,Sms,AI427066|Gy|SPMSY|SpmST|gyro,spermine synthase,protein-coding,19.86,24.99,15.82,24.36,24.44,49.03,31.89,22.06,0,0,0,0,0,0,0,0,74.64,117.46,14.53,69.66,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.3542819184697,4.69733795368587,5.91648357104403,5.17433258927802
Merged-chr18-80554645-4,chr18,80554303,80555058,+,969.071411,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10134,NR_028424,100039348,Mm.254722,NR_028424,NA,Gm2176,A430076E10Rik,glucosamine-6-phosphate deaminase 1 pseudogene,pseudo,40.13,53.82,40.72,62.74,42.21,57.11,47.58,46,0,0,0,0,0,0,0,0,216.65,247.47,25.15,119.15,133.72,0,0,0,0,0,0,0,0,0,0,Equal basal,5.52716507148435,5.3443325325698,7.20831198448825,6.07032535260645
Merged-chr19-17253049-5,chr19,17252895,17253221,+,968.719971,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,86447,NM_001136484,14537,Mm.244825,NM_010265,ENSMUSG00000038843,Gcnt1,5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT,"glucosaminyl (N-acetyl) transferase 1, core 2",protein-coding,2.48,0.64,4.38,2.72,33.12,23.25,45.56,22.06,24.6,54.13,81.83,49.45,234.72,158.99,88.64,176.05,13.87,14.83,32.42,55.99,75.55,370.64,395.5,189.99,252.19,14.19,989.68,728.57,548.56,873.13,912.76,High basal,1.6279503083506,4.67843084060313,3.33642511612454,5.56150644479566
Merged-chr1-85987445-4,chr1,85987252,85987596,+,968.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MIR|SINE|MIR,-26369,NM_001033290,227326,Mm.244158,NM_001033290,ENSMUSG00000049608,Gpr55,CTFL|Gm218|Lpir1,G protein-coupled receptor 55,protein-coding,16.55,16.02,12.12,17.79,53.11,33.36,46.57,24.58,0,0,0,0,0,0,0,0,54.16,54.74,25.71,59.25,54.4,0,0,0,0,0,0,0,0,0,0,High basal,3.94861647711292,5.0122701064863,5.1516995229404,5.32484672670146
Merged-chr12-80128778-6,chr12,80128640,80128908,+,968.533325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_033514, intron 2 of 2)","intron (NR_033514, intron 2 of 2)",4070,NR_033514,69548,Mm.269712,NR_033514,NA,2310015A10Rik,5330419I17Rik,RIKEN cDNA 2310015A10 gene,ncRNA,18.62,20.82,15.14,17.7,35.95,29.32,41,21.43,44.28,0,0,26.63,45.98,4.42,0,22.47,47.56,59.3,22.36,28.65,36.26,157.72,197.75,77.4,95.03,141.88,181.7,239.95,82.28,125.24,188.13,Equal basal,4.13207499970553,4.73570084051566,5.11634517718213,4.73248442833735
Merged-chr10-127578190-4,chr10,127578008,127578352,+,968.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_008512, exon 22 of 89)","exon (NM_008512, exon 22 of 89)",42968,NM_008512,16971,Mm.271854,NM_008512,ENSMUSG00000040249,Lrp1,A2mr|AI316852|CD91|Lrp|b2b1554Clo,low density lipoprotein receptor-related protein 1,protein-coding,16.96,14.42,27.6,30.14,23.43,26.28,24.3,35.92,0,0,0,0,0,0,0,0,75.3,88.95,29.06,55.34,67.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.37115663945882,4.5546030698258,5.72565334584682,5.44978175632716
Merged-chr12-40469176-4,chr12,40468951,40469340,+,968.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172803, intron 1 of 52)","intron (NM_172803, intron 1 of 52)",23092,NM_172803,238130,Mm.341423,NM_172803,ENSMUSG00000035954,Dock4,5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716,dedicator of cytokinesis 4,protein-coding,29.79,24.99,11.44,27.08,37.76,38.92,29.36,13.86,0,0,0,0,0,0,0,0,72.66,139.13,20.12,68.36,86.13,0,0,0,0,0,0,0,0,0,0,Equal basal,4.42792572304263,4.58486150701153,6.01785358491676,5.49439834022482
Merged-chr15-53563145-3,chr15,53562883,53563365,+,967.777771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177225, intron 4 of 4)","intron (NM_177225, intron 4 of 4)",51155,NR_039538,100628567,NA,NR_039538,ENSMUSG00000104794,Mir28c,mmu-mir-28c,microRNA 28c,ncRNA,21.1,17.3,20.87,14.98,23.02,28.3,25.31,21.11,0,0,0,0,0,0,0,0,53.5,72.99,9.5,42.97,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,4.17677942940181,4.39751018555748,5.34482890793705,4.66974734145313
Merged-chr18-4256969-3,chr18,4256808,4257105,+,967.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,91124,NM_026092,67328,Mm.158148,NM_026092,ENSMUSG00000024233,Lyzl1,1700038F02Rik|Lyc2|Lyzd1,lysozyme-like 1,protein-coding,15.31,18.58,14.81,14.81,10.1,5.05,9.62,7.56,0,0,0,0,0,0,0,0,42.27,70.71,6.71,16.93,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96837227477303,2.89086400133488,5.15736914594632,3.76310791527993
Merged-chr14-75075471-4,chr14,75075263,75075625,+,967.049988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_030568, intron 2 of 3)","intron (NR_030568, intron 2 of 3)",55439,NM_027581,70859,Mm.320289,NM_027581,ENSMUSG00000021997,Lrrc63,4921509B22Rik,leucine rich repeat containing 63,protein-coding,9.1,25.31,17.16,14.72,22.21,13.14,31.38,16.38,0,0,0,0,0,0,0,0,48.22,95.8,16.77,37.76,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95121392767001,4.1170423652967,5.46381975501342,5.03078254998799
Merged-chr4-88433574-4,chr4,88433412,88433734,+,966.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025760, intron 3 of 6)","intron (NM_025760, intron 3 of 6)",5353,NM_025760,66775,Mm.386788,NM_025760,ENSMUSG00000028497,Hacd4,4933428I03Rik|Hcad4|Ptplad2,3-hydroxyacyl-CoA dehydratase 4,protein-coding,12,19.86,19.86,21.73,31.3,31.34,31.38,25.52,0,0,0,0,0,0,0,0,58.12,78.69,29.06,55.34,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,4.13448046047642,4.67665867392904,5.4561777065178,5.30238099236303
Merged-chr12-35418073-8,chr12,35417844,35418268,+,966.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,116933,NM_013464,11622,Mm.341377,NM_013464,ENSMUSG00000019256,Ahr,Ah|Ahh|Ahre|In|bHLHe76,aryl-hydrocarbon receptor,protein-coding,14.48,21.78,13.8,23.92,62,51.55,60.24,28.04,162.37,193.96,100.02,87.5,191.17,331.23,350.14,176.05,43.59,72.99,34.1,80.73,100.48,532.3,391.01,348.31,548.24,432.73,641.75,636.95,579.42,697.79,724.63,High basal,4.13579900329937,5.34891466593859,5.20121645166273,5.89268805106101
Merged-chr18-79590641-7,chr18,79590414,79590853,+,965.914307,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-456262,NM_053117,93737,Mm.24678,NM_053117,ENSMUSG00000056214,Pard6g,2410049N21Rik|Par6a,par-6 family cell polarity regulator gamma,protein-coding,8.27,9.61,14.14,15.68,29.08,19.71,35.43,18.9,125.46,27.06,18.18,41.85,140.35,8.83,31.03,97.39,35.67,61.58,17.33,50.78,79.33,264.18,247.19,133.69,336.25,191.54,398.19,423.18,277.71,379.31,299.61,Equal basal,3.56131024544054,4.42758608340849,4.94202028060157,5.24651981815395
Merged-chr2-102986578-4,chr2,102986406,102986753,+,964.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-84914,NM_001039150,12505,Mm.423621,NM_009851,ENSMUSG00000005087,Cd44,AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1,CD44 antigen,protein-coding,21.93,19.22,8.41,11.48,23.02,16.17,14.68,14.18,0,0,0,0,0,0,0,0,69.35,70.71,10.62,33.86,52.13,0,0,0,0,0,0,0,0,0,0,Equal basal,3.81839623125495,3.87395180236427,5.50552142004098,4.63678030151811
Merged-chr4-45489848-4,chr4,45489683,45489999,+,964.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001033306, intron 1 of 5)","intron (NM_001033306, intron 1 of 5)",40987,NM_001033306,230126,Mm.251716,NM_001033306,ENSMUSG00000044813,Shb,BC028832,src homology 2 domain-containing transforming protein B,protein-coding,10.34,8.01,12.45,14.81,19.59,29.82,22.27,19.53,44.28,72.17,40.92,26.63,43.56,70.66,39.89,26.22,33.69,42.2,15.09,26.69,50.62,39.43,62.92,52.77,14.62,42.56,46.39,61.08,54.86,28.63,41.81,Equal basal,3.47770336034355,4.28629171340911,4.63899731475645,4.67339036366108
Merged-chr6-131272497-4,chr6,131272332,131272688,+,964.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,20734,NM_001327860,66441,Mm.46623,NM_025564,ENSMUSG00000030188,Magohb,2010012C16Rik|Mago|Magoh|Magoh-rs1,"mago homolog B, exon junction complex core component",protein-coding,30.61,26.27,19.86,29.7,26.66,28.81,27.33,10.08,0,0,0,0,0,0,0,0,80.58,114.04,16.77,46.23,66.48,0,0,0,0,0,0,0,0,0,0,Equal basal,4.66790165709324,4.22877295401296,5.94979904795898,5.10410336312625
Merged-chr6-72261461-4,chr6,72261288,72261661,+,964.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-25897,NM_153778,71093,Mm.87449,NM_153778,ENSMUSG00000037621,Atoh8,4933425C05Rik|Hath6|Math6|bHLHa21|okadin,atonal bHLH transcription factor 8,protein-coding,12,24.35,14.47,19.01,29.48,16.17,30.88,19.85,0,0,0,0,0,0,0,0,40.29,72.99,21.8,34.51,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,4.04680535820827,4.33241462431692,5.14620219944694,4.91016722091863
Merged-chr11-5734559-4,chr11,5734376,5734731,+,964.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001361588, intron 1 of 6)","intron (NM_001361588, intron 1 of 6)",6623,NM_001361590,72046,Mm.271657,NM_178623,ENSMUSG00000049680,Urgcp,2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507,upregulator of cell proliferation,protein-coding,14.48,25.63,9.09,11.65,27.26,23.76,31.89,18.9,0,22.55,0,22.82,7.26,22.08,0,22.47,46.24,78.69,21.8,49.48,74.79,7.89,0,17.59,43.86,0,7.73,0,17.14,42.94,0,Equal basal,3.80396479106312,4.4260387266565004,5.29539745794093,5.31300911427639
Merged-chr4-148693814-2,chr4,148693683,148693947,+,964,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,MER63D|DNA|hAT-Blackjack,50498,NM_001085505,230909,Mm.332067,NM_001085505,ENSMUSG00000070577,Gm572,b2b1167Clo,predicted gene 572,protein-coding,3.31,9.29,3.37,6.05,1.01,1.01,0,0.95,22.14,0,0,22.82,31.46,0,31.03,0,20.48,41.06,0.56,1.3,0,319.38,355.05,172.4,365.49,276.66,19.33,39.26,10.29,10.74,0,Low basal,2.5050642627096402,0.582308562790169,4.2790444923209,0.603829577101451
Merged-chr7-135710465-4,chr7,135710322,135710608,+,964,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081117, intron 4 of 13)","intron (NM_001081117, intron 4 of 13)",5914,NM_001081117,17345,Mm.4078,NM_001081117,ENSMUSG00000031004,Mki67,D630048A14Rik|Ki-67|Ki67,antigen identified by monoclonal antibody Ki 67,protein-coding,18.62,25.31,8.75,18.49,31.71,25.78,27.33,15.44,0,0,0,0,0,0,0,0,44.91,87.81,24.59,56.64,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.03833479522938,4.38339380671509,5.35255704078945,5.22049476567808
Merged-chr2-128444340-4,chr2,128444204,128444506,+,963.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15004,NR_028590,100043424,Mm.297222,NR_028589,NA,Gm14005,-,predicted gene 14005,ncRNA,12,15.38,11.11,22.87,52.91,30.83,35.43,28.36,9.84,22.55,0,49.45,9.68,53,13.3,108.62,58.79,79.83,32.42,80.73,65.73,3.94,0,0,3.65,0,3.87,0,0,3.58,0,Equal basal,3.86325043455556,4.93390824185649,5.47428936036203,5.66843054350849
Merged-chr3-62458510-4,chr3,62458350,62458694,+,963,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081295, intron 12 of 13)","intron (NM_001081295, intron 12 of 13)",48466,NM_028136,72162,Mm.224233,NM_028136,ENSMUSG00000027770,Dhx36,2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488,DEAH (Asp-Glu-Ala-His) box polypeptide 36,protein-coding,9.1,17.62,21.2,27.34,20.4,20.72,37.46,13.55,0,0,0,0,0,0,0,0,72,100.36,19,48.18,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,4.11151743950859,4.21794476229838,5.77928473975403,5.07387999261926
Merged-chr7-125618203-8,chr7,125618039,125618377,+,962.954163,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_021887, intron 1 of 8)","intron (NM_021887, intron 1 of 8)",14779,NM_021887,60504,Mm.155643,NM_021887,ENSMUSG00000030745,Il21r,NILR,interleukin 21 receptor,protein-coding,23.17,15.7,52.17,49.33,19.79,24.26,37.46,14.81,204.19,90.21,204.58,186.4,179.07,278.23,70.91,187.28,96.43,134.57,15.09,46.88,33.24,1242.03,1469.66,612.18,1107.44,1468.44,711.33,1221.55,370.28,797.99,487.73,Equal basal,4.90892426368644,4.30423505136044,6.19502390611507,4.73896806664315
Merged-chr13-112671873-4,chr13,112671728,112672041,+,962.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178746, intron 2 of 14)",Kanga1|DNA|TcMar-Tc2,11118,NM_178746,268706,Mm.40834,NM_175376,ENSMUSG00000047789,Slc38a9,4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09,"solute carrier family 38, member 9",protein-coding,13.65,9.93,17.84,20.85,45.44,41.45,77.45,38.12,0,0,0,0,0,0,0,0,35.01,99.22,48.63,85.94,97.46,0,0,0,0,0,0,0,0,0,0,High basal,3.88597918716035,5.36055767526098,5.26526545259712,6.07554915065431
Merged-chr14-70792327-3,chr14,70792169,70792547,+,962.700012,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER15|LTR|ERVL,17977,NM_010071,13449,Mm.243323,NM_010071,ENSMUSG00000022102,Dok2,DokR|Frip|dok-R,docking protein 2,protein-coding,5.79,3.52,4.04,3.5,2.63,4.04,5.57,2.52,22.14,36.09,9.09,34.24,33.88,53,57.62,74.91,30.38,45.62,0.56,5.86,4.53,441.61,337.08,316.64,456.86,461.1,212.63,244.31,168,121.67,132.38,Equal basal,2.25878978506117,1.92435352260919,4.62167043285123,1.77005042703928
Merged-chr12-32191130-6,chr12,32190948,32191292,+,962.244446,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_020272, intron 10 of 10)","intron (NM_020272, intron 10 of 10)",17218,NM_001146201,30955,Mm.101369,NM_020272,ENSMUSG00000020573,Pik3cg,5830428L06Rik|PI3Kgamma|p110gamma,"phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma",protein-coding,11.17,7.05,9.76,11.57,31.91,37.91,34.42,22.37,12.3,45.11,31.82,0,48.4,13.25,8.86,63.68,25.1,52.46,26.83,42.97,59.68,141.95,224.72,31.66,109.65,78.03,220.36,196.32,123.43,203.97,250.83,High basal,3.31301019631689,4.73271517876157,4.58766763103685,5.23779263782354
Merged-chr1-7100728-4,chr1,7100576,7100917,+,962.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_183028, intron 1 of 5)","intron (NM_183028, intron 1 of 5)",11826,NM_183028,319263,Mm.21539,NM_183028,ENSMUSG00000051285,Pcmtd1,8430411F12Rik|A030012M09Rik,protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1,protein-coding,12.41,19.86,9.42,11.92,31.5,27.8,20.25,13.55,0,0,0,0,0,0,0,0,43.59,70.71,19.56,39.72,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.70899251677599,4.26284738749802,5.17887402701069,5.02947905569287
Merged-chr5-146767802-5,chr5,146767591,146768022,+,961.706665,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011669, intron 2 of 8)","intron (NM_011669, intron 2 of 8)",27150,NM_011669,22217,Mm.167971,NM_011669,ENSMUSG00000029640,Usp12,Ubh1,ubiquitin specific peptidase 12,protein-coding,4.14,15.7,7.4,1.31,67.85,59.14,54.16,18.27,9.84,0,0,22.82,50.82,83.91,53.19,33.71,40.95,94.66,38.57,85.94,103.5,185.32,224.72,66.85,109.65,305.04,328.6,287.94,229.71,289.85,327.48,High basal,2.57528375149323,5.24523572455346,5.3410831741704,5.99443547584649
Merged-chr15-59530896-6,chr15,59530669,59531049,+,961.436096,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026746, intron 4 of 6)","intron (NM_026746, intron 4 of 6)",-117795,NM_144549,211770,Mm.40298,NM_144549,ENSMUSG00000032501,Trib1,A530090O15Rik|TRB-1|Trb1,tribbles pseudokinase 1,protein-coding,13.24,20.5,9.42,19.8,45.84,23.25,33.92,13.55,22.14,0,27.28,22.82,41.14,105.99,4.43,3.75,56.14,82.11,15.09,63.15,64.97,201.09,197.75,137.21,127.92,56.75,201.03,248.67,157.71,282.69,320.51,Equal basal,3.9126360134505,4.5077693562629,5.46177656639221,5.19126153610422
Merged-chr13-81351975-2,chr13,81351854,81352089,+,961,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_054053, intron 83 of 89)","intron (NM_054053, intron 83 of 89)",281173,NM_054053,110789,Mm.288694,NM_054053,ENSMUSG00000069170,Adgrv1,Frings|Gpr98|Mass1|Mgr1|VLGR1,adhesion G protein-coupled receptor V1,protein-coding,21.93,26.91,14.81,19.01,20.8,27.29,23.79,13.23,0,0,0,0,0,0,0,0,60.11,76.41,12.3,35.81,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30539614606234,4.16431426002326,5.45907023566181,4.42794260251355
Merged-chr4-55797453-4,chr4,55797312,55797582,+,960.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-264972,NM_010637,16600,Mm.4325,NM_010637,ENSMUSG00000003032,Klf4,EZF|Gklf|Zie,Kruppel-like factor 4 (gut),protein-coding,11.58,9.61,9.76,10.16,16.76,30.33,21.77,13.55,0,0,0,0,0,0,0,0,50.2,55.88,20.12,37.76,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.39274602823854,4.09648057721225,5.1127077139693196,4.79149761319129
Merged-chr7-4099018-6,chr7,4098849,4099209,+,960.25,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_033568, intron 5 of 8)",ORR1B1|LTR|ERVL-MaLR,-20501,NM_001109765,57776,Mm.29729,NM_021324,ENSMUSG00000030428,Ttyh1,4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty,tweety family member 1,protein-coding,1.65,6.41,2.69,5.96,28.27,28.81,33.92,14.49,14.76,0,45.46,83.69,94.37,101.58,62.05,108.62,21.14,34.21,19.56,40.37,36.26,374.58,391.01,274.43,296.05,418.54,746.13,636.95,473.14,522.45,1093.92,High basal,2.17008286843508,4.43966882821344,4.17503267530669,4.82910891137772
Merged-chr3-97775930-4,chr3,97775674,97776095,+,959.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039376, intron 8 of 46)","intron (NM_001039376, intron 8 of 46)",-7870,NR_110360,83679,Mm.129840,NM_031401,ENSMUSG00000038170,Pde4dip,4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454,phosphodiesterase 4D interacting protein (myomegalin),protein-coding,16.96,17.94,11.44,20.68,36.75,31.34,20.25,21.11,0,0,0,0,0,0,0,0,56.8,58.16,21.24,57.29,59.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.02099848788839,4.51866270705306,5.22760110436209,5.26348354973158
Merged-chr2-164513526-2,chr2,164513386,164513667,+,959.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,16001,NM_133779,78928,Mm.28228,NM_133779,ENSMUSG00000017721,Pigt,2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7,"phosphatidylinositol glycan anchor biosynthesis, class T",protein-coding,2.48,4.49,0,2.1,0,0,0.51,0,41.82,0,27.28,22.82,12.1,0,17.73,0,17.17,36.49,0.56,0,0,212.92,287.64,165.36,164.47,219.91,0,47.99,41.14,10.74,83.61,Low basal,1.388935882197,0,4.07969436320422,0.275368575257851
Merged-chr13-76579567-8,chr13,76579423,76579755,+,959.112488,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_030174, intron 1 of 20)","intron (NM_030174, intron 1 of 20)",194628,NM_030174,78771,Mm.316249,NM_030174,ENSMUSG00000021596,Mctp1,2810465F10Rik,"multiple C2 domains, transmembrane 1",protein-coding,23.99,27.23,28.61,36.45,50.28,29.82,56.69,32.14,34.44,27.06,77.29,91.3,87.11,229.65,115.24,138.59,76.62,112.9,43.04,42.97,66.48,173.49,283.14,140.73,197.37,255.38,289.95,257.4,185.14,153.87,278.7,Equal basal,4.79272281801892,5.11074258959488,5.90691290002099,5.51100941724162
Merged-chr18-82422248-4,chr18,82422082,82422420,+,958.895813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15474,NM_008082,14427,Mm.6219,NM_008082,ENSMUSG00000024553,Galr1,Galnr1,galanin receptor 1,protein-coding,6.62,24.67,14.81,19.72,21.81,17.18,32.4,18.9,0,0,0,0,0,0,0,0,59.45,85.53,20.12,57.95,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.89616617687143,4.26034617295093,5.53087253936206,5.08284403400776
Merged-chr17-42910621-4,chr17,42910464,42910793,+,958.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTB_Mm|LTR|ERVL-MaLR,-34204,NM_009847,12488,Mm.218637,NM_009847,ENSMUSG00000061665,Cd2ap,AL024079|C78928|METS-1|Mets1,CD2-associated protein,protein-coding,16.13,21.14,7.74,10.78,87.44,79.86,55.18,21.43,0,0,0,0,0,0,0,0,58.12,106.06,32.42,135.42,113.32,0,0,0,0,0,0,0,0,0,0,High basal,3.69542363249515,5.50526895088291,5.66732292291411,6.1716168246192
Merged-chr2-166717444-3,chr2,166716979,166717664,+,958.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER15|LTR|ERVL,-3489,NM_177782,277360,Mm.34420,NM_177782,ENSMUSG00000039621,Prex1,G630042G04|P-REX1|Setd6,"phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1",protein-coding,23.99,34.28,16.15,25.94,38.98,33.86,58.72,23.95,0,0,0,0,0,0,0,0,64.73,93.52,31.3,47.53,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.56176109131556,4.97558737502141,5.65405939655411,5.21270670537205
Merged-chr3-81102785-6,chr3,81102556,81102973,+,958.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_019971, intron 1 of 5)","intron (NM_019971, intron 1 of 5)",66348,NM_001357746,54635,Mm.331089,NM_019971,ENSMUSG00000028019,Pdgfc,1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E,"platelet-derived growth factor, C polypeptide",protein-coding,15.72,15.06,12.79,15.33,8.68,16.17,7.59,6.93,98.4,4.51,86.38,15.22,65.34,61.83,101.94,41.2,35.01,67.29,6.15,23.44,18.13,339.09,287.64,246.28,190.06,269.57,185.57,257.4,281.14,175.34,195.09,Equal basal,3.87086990425217,3.09955946565118,4.99118506049101,3.74278310140597
Merged-chr6-17652295-4,chr6,17652110,17652494,+,958.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007604, intron 3 of 9)",ORR1E|LTR|ERVL-MaLR,15292,NM_007604,12343,Mm.392504,NM_007604,ENSMUSG00000015733,Capza2,1110053K06Rik|AW208808|Cappa2,"capping protein (actin filament) muscle Z-line, alpha 2",protein-coding,36.41,17.3,26.92,51,22.01,20.22,21.77,23.95,0,0,0,0,0,0,0,0,96.43,139.13,20.68,41.02,68.75,0,0,0,0,0,0,0,0,0,0,Equal basal,4.88767628823295,4.25330796418323,6.21875904153803,5.16117932239718
Merged-chr19-4144084-4,chr19,4143909,4144262,+,958.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_206973, exon 2 of 2)","3' UTR (NM_206973, exon 2 of 2)",4286,NM_206973,269053,Mm.131677,NM_206973,ENSMUSG00000044724,Gpr152,A930009H15Rik|Gm673,G protein-coupled receptor 152,protein-coding,33.51,25.63,12.12,11.57,18.58,29.32,31.38,17.33,0,0,0,0,0,0,0,0,66.05,100.36,25.71,22.79,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.20431106013411,4.34164209915808,5.71834208994387,4.95428318906776
Merged-chr2-71543186-4,chr2,71543022,71543323,+,957.833374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_010054),TTS (NM_010054),3582,NM_010054,13392,Mm.3896,NM_010054,ENSMUSG00000023391,Dlx2,AW121999|Dlx-2|Tes-1,distal-less homeobox 2,protein-coding,15.31,25.63,20.87,24.62,21.2,26.79,49.61,12.92,0,0,0,0,0,0,0,0,64.73,93.52,19.56,52.74,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.37024559634177,4.40269741405467,5.65405939655411,5.08776802605309
Merged-chr8-41025798-8,chr8,41025635,41025966,+,957.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001005863, intron 5 of 13)",MTC|LTR|ERVL-MaLR,8332,NR_015457,78849,Mm.440930,NR_015457,ENSMUSG00000084960,B430010I23Rik,-,RIKEN cDNA B430010I23 gene,ncRNA,6.62,1.6,10.1,12.18,27.06,33.86,58.72,23.32,61.5,76.68,150.02,83.69,278.28,172.24,345.71,340.86,26.42,33.07,12.86,27.34,21.91,232.63,373.03,193.51,204.67,85.13,456.18,488.62,188.57,293.43,313.54,High basal,2.75923392353647,4.84164590005438,4.30387625610398,4.22561221781945
Merged-chr3-95694021-6,chr3,95693820,95694241,+,957.305542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-6113,NM_001301705,229595,Mm.490574,NM_144899,ENSMUSG00000015850,Adamtsl4,ADAMTSL-4|Tsrc1,ADAMTS-like 4,protein-coding,31.44,28.83,18.85,22.17,14.54,28.81,30.37,17.96,22.14,22.55,27.28,22.82,16.94,97.16,66.48,44.95,79.92,99.22,8.38,39.06,57.42,114.35,229.21,31.66,164.47,234.1,259.02,283.57,92.57,329.21,278.7,Equal basal,4.59561572254899,4.24875434262671,5.84517778925134,4.6428691196347
Merged-chr14-66845693-8,chr14,66845467,66845888,+,957.229187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009955, intron 3 of 13)","intron (NM_009955, intron 3 of 13)",22923,NM_009955,12934,Mm.352648,NM_009955,ENSMUSG00000022048,Dpysl2,AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2,dihydropyrimidinase-like 2,protein-coding,67.02,58.31,27.6,26.02,102.18,124.84,130.09,53.25,91.02,103.75,50.01,53.26,140.35,154.57,128.53,131.1,96.43,169.92,60.36,111.33,136.74,283.89,247.19,119.62,255.84,361.79,270.62,270.49,198.85,257.65,202.06,High basal,5.29636090097258,6.34234811789195,6.36130445487311,6.4618214996279
Merged-chr2-160060282-4,chr2,160059989,160060577,+,956.599976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,43630,NR_040499,71613,Mm.98139,NR_040499,ENSMUSG00000086653,9130015L21Rik,-,RIKEN cDNA 9130015L21 gene,ncRNA,19.44,14.74,13.46,23.75,18.17,27.8,34.93,14.81,31.98,27.06,0,45.65,7.26,30.91,0,44.95,53.5,79.83,21.24,45.57,64.22,39.43,8.99,21.11,7.31,42.56,3.87,39.26,24,25.05,0,Equal basal,4.10297679350524,4.28677419982468,5.40798184575347,5.1906294448391
Merged-chr8-126571216-4,chr8,126571033,126571386,+,956.541626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,22227,NM_001164598,270110,Mm.334918,NM_001164598,ENSMUSG00000051495,Irf2bp2,E130305N23Rik|IRF-2BP2,interferon regulatory factor 2 binding protein 2,protein-coding,31.44,31.72,24.23,32.51,32.51,29.32,18.22,17.96,0,0,0,0,0,0,0,0,88.51,123.17,16.21,39.06,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.84520083554769,4.35890613063767,6.07107074572101,4.9824757210561
Merged-chr3-81058651-6,chr3,81058496,81058834,+,956.468262,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_019971, intron 1 of 5)","intron (NM_019971, intron 1 of 5)",22249,NM_001357746,54635,Mm.331089,NM_019971,ENSMUSG00000028019,Pdgfc,1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E,"platelet-derived growth factor, C polypeptide",protein-coding,25.24,23.07,24.9,26.02,23.83,21.73,19.24,16.38,12.3,13.53,9.09,0,12.1,22.08,79.78,29.97,78.6,98.08,6.15,26.69,58.93,232.63,121.35,80.92,127.92,127.69,204.89,139.61,72,182.5,118.45,Equal basal,4.58849731543117,4.13571642417787,5.82517101281478,4.34375795407825
Merged-chr8-86881398-7,chr8,86881219,86881630,+,956.452393,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_030563, intron 1 of 6)","intron (NM_030563, intron 1 of 6)",3834,NM_030563,80750,Mm.25117,NM_030563,ENSMUSG00000031652,N4bp1,AI481586|C81621,NEDD4 binding protein 1,protein-coding,40.96,35.56,20.87,22.61,46.25,55.6,36.95,17.33,63.96,162.38,59.1,15.22,19.36,66.25,66.48,56.19,73.32,114.04,25.71,75.52,96.7,516.53,355.05,204.06,259.5,326.32,429.12,375.19,311.99,225.44,452.89,Equal basal,4.79746101124406,4.93033429831906,5.8828423375423204,5.71051275383897
Merged-chr9-61056487-4,chr9,61056334,61056648,+,956.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,39422,NR_040767,330956,Mm.207985,NR_040767,ENSMUSG00000111290,Gm5122,A430102L10,predicted gene 5122,ncRNA,14.07,17.62,19.86,23.48,20.8,19.21,28.35,17.01,0,0,0,0,0,0,0,0,54.16,72.99,22.36,44.92,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,4.17872989244218,4.19645780075319,5.35345841272219,5.00417610764243
Merged-chr6-39527973-4,chr6,39527820,39528127,+,956.033325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172477, intron 1 of 18)",ORR1C2|LTR|ERVL-MaLR,29861,NM_172477,209773,Mm.440021,NM_172477,ENSMUSG00000038456,Dennd2a,B930096L08Rik|C130031G22|mKIAA1277,DENN/MADD domain containing 2A,protein-coding,20.68,27.23,15.82,21.99,37.56,29.82,20.75,11.34,0,0,0,0,0,0,0,0,64.73,79.83,18.44,39.06,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.35718373309807,4.29696793180414,5.54225468263408,4.9753979540657
Merged-chr13-51115983-4,chr13,51115732,51116164,+,956,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001283029, intron 1 of 5)","intron (NM_001283029, intron 1 of 5)",14401,NM_001283029,20729,Mm.188432,NM_011462,ENSMUSG00000021395,Spin1,Spin,spindlin 1,protein-coding,16.13,23.71,17.16,19.01,38.17,23.25,36.95,21.43,0,0,0,0,0,0,0,0,88.51,84.39,21.24,59.9,74.04,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19852393557922,4.63823629272381,5.80310829854704,5.38582018510445
Merged-chr5-148708196-4,chr5,148708003,148708371,+,955.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-33653,NR_028285,70138,Mm.417834,NR_028285,ENSMUSG00000086494,2210417A02Rik,AV081004,RIKEN cDNA 2210417A02 gene,ncRNA,12.82,10.89,13.13,14.98,62,65.71,74.41,33.4,0,0,0,0,0,0,0,0,48.88,72.99,40.24,87.89,99.73,0,0,0,0,0,0,0,0,0,0,High basal,3.68428154270994,5.57490717898676,5.281346374598,6.00754918558122
Merged-chr15-50772765-7,chr15,50772553,50772968,+,955.214294,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001310485, intron 5 of 7)","intron (NM_001310485, intron 5 of 7)",116289,NM_001310481,83925,Mm.30466,NM_032000,ENSMUSG00000038679,Trps1,AI115454|AI447310|D15Ertd586e,transcriptional repressor GATA binding 1,protein-coding,34.34,50.94,26.59,23.13,55.94,72.28,55.18,25.52,71.34,36.09,18.18,22.82,104.05,141.32,132.96,108.62,94.45,116.32,40.8,85.94,86.88,394.29,350.56,204.06,285.08,347.6,440.72,335.93,332.57,368.58,348.38,Equal basal,4.94958498753714,5.36514685905884,6.07664305219488,5.93813457816756
Merged-chr18-12132870-4,chr18,12132669,12133054,+,954.133301,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_024182, intron 1 of 12)","intron (NM_024182, intron 1 of 12)",4011,NM_024182,66878,Mm.28551,NM_024182,ENSMUSG00000024404,Riok3,1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd,RIO kinase 3,protein-coding,20.68,20.5,25.58,25.85,31.5,11.12,25.31,19.53,0,0,0,0,0,0,0,0,73.32,86.67,18.44,48.83,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,4.49242753398195,4.1689406875868,5.68840625355732,5.04584838160614
Merged-chr17-27038434-4,chr17,27038274,27038621,+,953.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,9188,NM_027544,70772,Mm.440437,NM_027544,ENSMUSG00000048731,Ggnbp1,0610031G08Rik|mdf,gametogenetin binding protein 1,protein-coding,12,4.81,10.77,9.81,73.51,89.97,63.27,52.3,0,0,0,0,0,0,0,0,72.66,67.29,35.21,121.75,141.28,0,0,0,0,0,0,0,0,0,0,High basal,3.19243167099019,5.84852131161925,5.5035704589235,6.26471814931481
Merged-chr2-128871889-5,chr2,128871579,128872493,+,953.200012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_024237, intron 1 of 7)","intron (NM_024237, intron 1 of 7)",8104,NM_024237,70370,Mm.5107,NM_024237,ENSMUSG00000027386,Fbln7,1600015H20Rik|AI464334|TM14,fibulin 7,protein-coding,18.2,33.64,25.91,37.77,33.93,25.78,33.92,32.14,56.58,49.62,104.56,53.26,79.85,44.16,88.64,48.69,95.11,116.32,14.53,67.71,55.91,31.54,152.81,94.99,87.72,0,23.2,43.63,0,67.99,0,Equal basal,4.7490487018643,4.73889289438101,6.08159765947758,5.13622189600862
Merged-chr10-87732169-4,chr10,87732018,87732387,+,952.854187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-126063,NM_001314010,16000,Mm.268521,NM_010512,ENSMUSG00000020053,Igf1,C730016P09Rik|Igf-1|Igf-I,insulin-like growth factor 1,protein-coding,17.79,11.53,17.5,22.78,23.22,15.67,33.92,15.75,0,0,0,0,0,0,0,0,55.48,96.94,16.21,44.92,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,4.06693855923337,4.18496083848576,5.57081028006086,5.00003266641917
Merged-chr5-19897269-4,chr5,19897112,19897418,+,952.770813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001170746, intron 2 of 22)","intron (NM_001170746, intron 2 of 22)",-10253,NM_001170745,50791,Mm.332231,NM_015823,ENSMUSG00000040003,Magi2,AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705,"membrane associated guanylate kinase, WW and PDZ domain containing 2",protein-coding,18.2,13.46,17.84,25.85,32.71,27.8,38.47,12.29,0,0,0,0,0,0,0,0,62.09,94.66,27.39,44.27,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.1760515105468,4.46203885065466,5.63321981811454,5.21786781909409
Merged-chr16-70330851-4,chr16,70330701,70330982,+,952.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028803, intron 1 of 15)","intron (NM_028803, intron 1 of 15)",16892,NM_028803,74185,Mm.396102,NM_028803,ENSMUSG00000022707,Gbe1,2310045H19Rik|2810426P10Rik|D16Ertd536e,"glucan (1,4-alpha-), branching enzyme 1",protein-coding,10.34,11.53,16.15,19.89,57.35,77.33,68.34,35.29,0,0,0,0,0,0,0,0,64.73,86.67,55.33,97.66,123.9,0,0,0,0,0,0,0,0,0,0,High basal,3.80558863529495,5.59305774729727,5.6003210107241,6.31136703242331
Merged-chr6-50503227-2,chr6,50503102,50503385,+,952.450012,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-46889,NM_001347213,71720,Mm.44153,NM_027881,ENSMUSG00000029822,Osbpl3,1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3,oxysterol binding protein-like 3,protein-coding,4.96,2.88,4.71,1.75,0.4,0,0,1.58,0,0,0,0,9.68,0,0,0,56.8,62.72,1.68,0,0,287.83,238.2,281.46,208.33,156.07,34.79,0,13.71,10.74,0,Low basal,2.02572716719789,0.409269502848578,5.28049287448521,0.576869835071587
Merged-chr14-76703606-8,chr14,76703388,76703840,+,951.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,26046,NR_015485,73272,Mm.116804,NR_015485,ENSMUSG00000101009,1700108F19Rik,1700020I02Rik|BB065030,RIKEN cDNA 1700108F19 gene,ncRNA,5.79,20.5,14.81,17.88,44.83,32.35,46.57,19.22,31.98,31.57,163.66,95.1,205.69,194.32,234.9,153.57,46.9,54.74,27.95,83.34,58.93,654.53,512.36,369.42,639.61,638.45,893.03,571.51,445.71,733.57,968.5,Equal basal,3.76451261227958,4.85261472905392,5.05057178364735,5.56243450199362
Merged-chr18-62478331-4,chr18,62478077,62478500,+,950.858337,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,65564,NM_001361091,107035,Mm.21295,NM_134136,ENSMUSG00000042211,Fbxo38,6030410I24Rik|AU044865|AW214031|Moka|SP329,F-box protein 38,protein-coding,1.65,0,0,0,29.08,30.83,43.03,29.62,22.14,27.06,0,19.02,106.47,251.73,115.24,138.59,0.66,6.84,21.8,33.86,37.77,23.66,35.95,0,40.2,0,436.85,349.02,195.43,386.47,292.64,High basal,0.327944201414595,4.80362265359247,1.41401074054787,4.81663372504361
Merged-chr7-29491203-3,chr7,29491050,29491368,+,950.694458,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081028, intron 2 of 22)","intron (NM_001081028, intron 2 of 22)",14251,NM_001081028,74206,Mm.447042,NM_001081028,ENSMUSG00000030583,Sipa1l3,2610511M17Rik,signal-induced proliferation-associated 1 like 3,protein-coding,12,4.81,4.04,5.61,23.02,20.22,19.74,9.14,0,0,0,0,0,0,0,0,38.97,36.49,12.3,29.3,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.70817473238047,3.90006261577707,4.6401087444007,4.53898260185482
Merged-chr12-30578258-7,chr12,30578099,30578450,+,950.690491,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-6169,NM_172049,211986,Mm.34035,NM_172049,ENSMUSG00000043061,Tmem18,BC024093,transmembrane protein 18,protein-coding,5.79,7.37,13.46,15.25,15.75,16.68,24.3,7.88,56.58,31.57,27.28,148.36,99.21,128.07,177.29,116.12,29.06,43.34,17.33,31.9,33.24,299.66,184.27,116.1,219.29,184.44,653.34,702.39,236.57,468.77,418.06,Equal basal,3.32852103117101,3.72545725711401,4.5554684856764,4.62366958659982
Merged-chr12-21523147-3,chr12,21523019,21523277,+,950.133362,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-105712,NM_011739,22630,Mm.289630,NM_011739,ENSMUSG00000076432,Ywhaq,2700028P07Rik|AA409740|AU021156|R74690,tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta,protein-coding,3.72,5.13,3.03,3.68,0,0,1.01,0.95,103.32,27.06,63.65,26.63,65.34,0,31.03,7.49,21.14,35.35,0,0,0.76,354.86,435.95,397.57,402.04,312.13,131.44,109.07,174.85,153.87,125.42,Low basal,2.13019611902821,0.37768619177606,4.19752238158124,0.202256518590795
Merged-chr12-17712541-8,chr12,17712384,17712683,+,950,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_016677, intron 1 of 3)","intron (NM_016677, intron 1 of 3)",21724,NM_016677,53602,Mm.313619,NM_016677,ENSMUSG00000071379,Hpcal1,NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3,hippocalcin-like 1,protein-coding,4.96,16.34,11.78,13.06,16.96,19.71,11.64,10.08,91.02,157.87,231.86,254.88,75.01,88.33,274.79,239.72,31.7,55.88,15.65,36.46,29.46,516.53,444.94,415.16,493.41,461.1,618.55,309.75,469.71,465.19,334.45,Equal basal,3.43999935231785,3.64422695942676,4.79240957848982,4.58313915889601
Merged-chr2-71002658-4,chr2,71002508,71002865,+,949.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145524, intron 2 of 9)","intron (NM_145524, intron 2 of 9)",15688,NM_001110512,228019,Mm.490343,NM_145524,ENSMUSG00000041975,Mettl8,BC004636|Tip,methyltransferase like 8,protein-coding,14.48,33.32,16.15,18.75,22.01,34.87,46.06,22.06,0,0,0,0,0,0,0,0,81.24,114.04,17.33,43.62,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.26195327855287,4.66994476554272,5.95558876446954,5.06463092073357
Merged-chr5-100587803-4,chr5,100587651,100587946,+,949.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15593,NM_139198,231507,Mm.34609,NM_139198,ENSMUSG00000029322,Plac8,C15|D5Wsu111e,placenta-specific 8,protein-coding,15.31,21.46,13.46,16.74,29.69,24.77,22.27,17.64,0,0,0,0,0,0,0,0,37.65,80.97,12.86,43.62,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.02180601923126,4.32937052496075,5.17211603063171,4.97618812398872
Merged-chr10-17775325-4,chr10,17775194,17775500,+,949.291626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-20872,NM_138628,378431,Mm.283493,NM_138628,ENSMUSG00000039891,Txlnb,2310001N14Rik|Mdp77,taxilin beta,protein-coding,14.89,4.81,11.44,12.53,21.61,22.74,33.41,10.71,41.82,27.06,4.55,22.82,16.94,79.49,26.59,22.47,42.93,66.15,16.77,39.72,43.06,39.43,13.48,0,7.31,120.6,42.53,78.53,13.71,14.31,41.81,Equal basal,3.37426913649,4.15987545544509,5.12132711341929,4.82998249420424
Merged-chr16-28914451-6,chr16,28914248,28914679,+,949.111084,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177718, intron 1 of 1)","intron (NM_177718, intron 1 of 1)",15235,NM_177718,239796,Mm.155887,NM_177718,ENSMUSG00000051065,Mb21d2,1600021P15Rik|A430031N04|C87006,Mab-21 domain containing 2,protein-coding,3.31,4.49,1.35,1.58,34.33,39.42,26.32,14.18,81.18,54.13,27.28,34.24,329.1,344.48,248.2,198.52,17.17,44.48,21.24,50.78,70.26,678.19,552.81,499.6,789.46,524.95,854.37,676.22,586.28,594.02,780.37,High basal,1.71336531698899,4.52523414763258,4.21628819790808,5.28361442602505
Merged-chr10-24173411-4,chr10,24173244,24173554,+,948.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_016797, intron 2 of 9)","intron (NM_016797, intron 2 of 9)",24082,NM_016797,53331,Mm.248042,NM_016797,ENSMUSG00000019998,Stx7,AI315064|AI317144|AW107239|Syn7,syntaxin 7,protein-coding,20.27,18.58,19.52,19.89,22.42,14.66,30.37,5.04,0,0,0,0,0,0,0,0,86.53,140.27,9.5,38.41,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.26085245354776,3.7458489935891,6.14753775612387,4.62467266858217
Merged-chr18-6508055-3,chr18,6507918,6508182,+,948.666687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_007935, intron 1 of 13)","intron (NM_007935, intron 1 of 13)",8058,NM_007935,13831,Mm.312133,NM_007935,ENSMUSG00000024240,Epc1,2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893,enhancer of polycomb homolog 1,protein-coding,4.96,14.74,7.74,2.98,9.9,11.12,4.05,2.84,44.28,81.19,4.55,38.04,29.04,26.5,17.73,22.47,26.42,57.02,1.68,16.28,13.6,201.09,328.09,172.4,310.67,361.79,100.51,209.41,109.71,42.94,411.09,Equal basal,2.81999739344633,2.56183579587835,4.68101519755425,2.94612587898607
Merged-chr4-123562514-6,chr4,123562164,123562767,+,948.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001199137, intron 1 of 92)","intron (NM_001199137, intron 1 of 92)",-53955,NR_105824,102465214,NA,NR_105824,ENSMUSG00000099005,Mir6398,Gm27657|mmu-mir-6398,microRNA 6398,ncRNA,21.93,35.56,18.51,32.42,30.29,22.74,24.3,25.21,0,0,0,0,0,0,0,0,64.73,134.57,14.53,76.83,73.28,0,0,0,0,0,0,0,0,0,0,Equal basal,4.65504353997209,4.4616525815991,5.91243999694722,5.3231284688114
Merged-chr4-86676910-5,chr4,86676683,86677052,+,948.599976,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR34B_MM|LTR|ERVK,-6808,NM_007408,11520,Mm.381,NM_007408,ENSMUSG00000028494,Plin2,AA407157|ADPH|Adfp|Adrp,perilipin 2,protein-coding,5.79,2.88,0,4.21,28.88,24.26,31.38,19.53,19.68,27.06,0,0,14.52,44.16,4.43,63.68,34.35,30.79,7.27,51.43,71.02,228.69,44.94,42.22,127.92,120.6,336.34,392.64,202.28,297.01,271.74,High basal,1.6587605995454,4.47191532411919,4.43601555029063,4.80832237195991
Merged-chr7-80180680-6,chr7,80180507,80180818,+,948.033325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-6179,NM_013659,20352,Mm.275909,NM_013659,ENSMUSG00000030539,Sema4b,SemC|Semac|mKIAA1745,"sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B",protein-coding,21.1,14.42,8.41,13.32,29.28,25.27,18.22,11.03,39.36,27.06,31.82,22.82,58.08,39.75,0,44.95,43.59,44.48,16.21,40.37,38.53,268.12,296.63,179.43,127.92,177.35,332.47,235.59,216,286.27,522.57,Equal basal,3.75249908381534,4.10257590554178,4.85495370037655,4.7702779076676904
Merged-chr9-106296928-8,chr9,106296762,106297080,+,947.854187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_027354, intron 7 of 10)","intron (NM_027354, intron 7 of 10)",15860,NM_027354,70235,Mm.23054,NM_027354,ENSMUSG00000023345,Poc1a,2510040D07Rik|Wdr51a|cha,POC1 centriolar protein A,protein-coding,12.82,10.89,7.74,6.75,56.54,69.75,97.7,35.6,179.59,81.19,200.03,174.99,307.32,229.65,221.61,213.5,35.67,65,39.13,67.71,74.04,484.98,602.24,239.24,511.69,439.82,777.05,859.45,311.99,554.65,515.6,High basal,3.24281551234139,5.68117169856179,4.9799433463685,5.73006498643288
Merged-chr11-22928991-4,chr11,22928690,22929176,+,947.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001361661, intron 2 of 2)",MTE2b|LTR|ERVL-MaLR,-43072,NM_011663,22183,Mm.29542,NM_011663,ENSMUSG00000044068,Zrsr1,D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs,"zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1",protein-coding,23.17,15.38,30.63,40.39,24.03,18.7,34.42,26.78,0,0,0,0,0,0,0,0,102.38,119.75,24.59,61.85,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6492587263029,4.44735872786956,6.15456017792523,5.39665994901021
Merged-chr7-143048111-4,chr7,143047926,143048297,+,947.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_110355, intron 1 of 4)",MTC|LTR|ERVL-MaLR,-4639,NM_133655,12520,Mm.806,NM_133655,ENSMUSG00000037706,Cd81,Tapa-1|Tapa1|Tspan28,CD81 antigen,protein-coding,26.48,12.17,6.39,15.86,22.42,26.79,21.77,23.95,0,0,0,0,0,0,0,0,48.88,76.41,15.09,41.67,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.75461133206682,4.34946889275316,5.3136137415083,4.80387605324954
Merged-chr4-132334929-4,chr4,132334786,132335135,+,946.9375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133878, intron 6 of 9)","intron (NM_133878, intron 6 of 9)",-5422,NM_027925,71787,Mm.239183,NM_027925,ENSMUSG00000028898,Trnau1ap,1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2,tRNA selenocysteine 1 associated protein 1,protein-coding,18.2,15.38,8.75,7.71,90.27,106.65,108.33,31.51,0,0,0,0,0,0,0,0,48.22,63.86,44.71,83.34,83.1,0,0,0,0,0,0,0,0,0,0,High basal,3.58536214563623,5.99415865921969,5.17795517683781,5.94584716225403
Merged-chr6-40595367-4,chr6,40595210,40595506,+,946.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9553,NM_001038604,23845,Mm.103765,NM_021364,ENSMUSG00000029915,Clec5a,Clecsf5|Ly100|MDL-1|Mdl1,"C-type lectin domain family 5, member a",protein-coding,17.38,25.63,12.79,18.05,23.43,29.82,24.8,13.55,0,0,0,0,0,0,0,0,60.11,72.99,10.06,39.06,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,4.15012759911402,4.24728295150429,5.4268028687515,4.50025688036581
Merged-chr3-57696442-4,chr3,57696278,57696586,+,946.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3895,NM_001033349,242037,Mm.291091,NM_001033349,ENSMUSG00000074591,Ankub1,Gm410,ankrin repeat and ubiquitin domain containing 1,protein-coding,25.65,24.67,13.8,24.71,31.3,19.21,27.33,22.06,0,0,0,0,0,0,0,0,57.46,76.41,11.18,31.25,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,4.39096868790838,4.41463229567723,5.42738952661384,4.48212037803534
Merged-chr8-83535948-3,chr8,83535798,83536081,+,946.633362,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-5154,NM_146270,258267,Mm.377401,NM_146270,ENSMUSG00000047286,Olfr370,MOR267-16|MOR26716,olfactory receptor 370,protein-coding,14.07,14.74,7.4,11.92,1.21,2.02,0,1.26,63.96,81.19,59.1,0,19.36,0,17.73,22.47,48.22,55.88,1.68,0.65,0,268.12,197.75,133.69,164.47,219.91,108.25,4.36,27.43,28.63,41.81,Low basal,3.57186833227547,0.904207352467396,5.08444988008886,0.768614605493405
Merged-chr9-90107145-4,chr9,90106986,90107290,+,946.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039147, intron 3 of 12)","intron (NM_001039147, intron 3 of 12)",7682,NM_001039147,21761,Mm.426209,NM_024431,ENSMUSG00000062270,Morf4l1,MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002,mortality factor 4 like 1,protein-coding,19.44,12.17,4.71,10.51,23.43,27.29,26.32,16.38,0,0,0,0,0,0,0,0,29.72,51.32,18.44,33.86,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,3.4291730336121,4.32235354445253,4.68842864103127,4.58796136471113
Merged-chr13-80971830-2,chr13,80971713,80971962,+,946,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_015587, intron 1 of 1)","intron (NR_015587, intron 1 of 1)",7763,NR_015587,319983,Mm.343027,NR_015587,ENSMUSG00000097098,9330111N05Rik,-,RIKEN cDNA 9330111N05 gene,ncRNA,7.45,7.05,3.7,4.29,5.25,8.09,3.04,9.14,0,0,0,0,0,0,0,0,28.4,35.35,6.71,17.58,15.11,0,0,0,0,0,0,0,0,0,0,Equal basal,2.56339878592495,2.57575350130168,4.39924237478679,3.56993878106554
Merged-chr3-38105652-4,chr3,38105516,38105837,+,945.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,102443,NR_040541,71342,Mm.410782,NR_040541,ENSMUSG00000106002,5430434I15Rik,-,RIKEN cDNA 5430434I15 gene,ncRNA,10.76,18.58,18.51,22.52,23.22,22.24,25.82,12.92,0,0,0,0,0,0,0,0,56.8,67.29,15.09,50.13,46.09,0,0,0,0,0,0,0,0,0,0,Equal basal,4.07391783996932,4.14368133424308,5.32976996439307,4.92187986368326
Merged-chr8-41006467-5,chr8,41006259,41006732,+,945.81665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001005863, intron 7 of 13)","intron (NM_001005863, intron 7 of 13)",-10973,NR_015457,78849,Mm.440930,NR_015457,ENSMUSG00000084960,B430010I23Rik,-,RIKEN cDNA B430010I23 gene,ncRNA,18.62,17.62,9.42,23.04,10.1,7.58,8.1,10.08,137.76,162.38,300.05,194.01,111.31,83.91,124.1,29.97,79.92,102.64,7.27,7.81,11.33,1107.97,849.43,809.2,793.12,950.59,278.35,248.67,171.43,150.29,167.22,Low basal,4.01287985862312,3.04939866775282,5.86920433026385,3.13078420668639
Merged-chr19-25139555-7,chr19,25139370,25139858,+,945.514282,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_028785, intron 23 of 47)",MER5A1|DNA|hAT-Charlie,-97361,NM_181404,107351,Mm.260722,NM_181404,ENSMUSG00000032702,Kank1,A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172,KN motif and ankyrin repeat domains 1,protein-coding,6.62,5.77,5.05,6.66,27.67,37.4,36.45,13.55,103.32,311.24,72.74,79.89,125.83,141.32,106.37,209.76,24.44,38.77,18.44,28.65,27.95,414.01,283.14,182.95,204.67,496.57,351.8,475.53,246.85,293.43,752.5,High basal,2.70153776614419,4.52594475638848,4.35978816511052,4.52343652233093
Merged-chr10-121454296-5,chr10,121454139,121454443,+,945.266663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_138956, intron 1 of 4)","intron (NM_138956, intron 1 of 4)",21959,NM_138956,192678,Mm.41265,NM_138956,ENSMUSG00000025795,Rassf3,AW212023|AW322379,Ras association (RalGDS/AF-6) domain family member 3,protein-coding,11.17,23.71,7.74,23.48,10.1,8.09,8.1,0.95,113.16,99.23,100.02,201.62,38.72,53,53.19,22.47,53.5,92.38,5.03,14.32,9.07,520.47,561.79,341.27,610.37,553.33,170.1,248.67,54.86,118.09,69.68,Low basal,3.87453991797094,2.38356861247035,5.51110359297879,3.13762628113271
Merged-chr6-17555017-3,chr6,17554831,17555168,+,944.916687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008591, intron 16 of 21)","intron (NM_008591, intron 16 of 21)",-82011,NM_007604,12343,Mm.392504,NM_007604,ENSMUSG00000015733,Capza2,1110053K06Rik|AW208808|Cappa2,"capping protein (actin filament) muscle Z-line, alpha 2",protein-coding,0.41,0,0,0.35,0.4,3.03,0.51,2.84,29.52,27.06,0,3.8,0,26.5,0,18.73,42.93,54.74,0,7.81,0,524.41,489.89,165.36,325.29,404.35,208.76,65.44,68.57,150.29,181.16,Equal basal,0.104290808306771,1.02734403857686,4.98878525657688,0.927401932128052
Merged-chr13-113421665-4,chr13,113421508,113421813,+,944.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,81184,NR_045501,70917,Mm.491036,NR_045501,ENSMUSG00000114790,4921509O07Rik,-,RIKEN cDNA 4921509O07 gene,ncRNA,15.72,11.53,4.71,14.11,28.88,9.1,17.21,15.75,0,0,0,0,0,0,0,0,42.93,58.16,17.33,31.25,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.44220689319183,3.86818649071921,5.03116554788696,4.7174402533631
Merged-chr14-20827649-8,chr14,20827478,20827781,+,944.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9033,NM_008873,18792,Mm.4183,NM_008873,ENSMUSG00000021822,Plau,u-PA|uPA,"plasminogen activator, urokinase",protein-coding,22.34,37.16,16.83,15.42,68.26,35.38,61.25,34.03,95.94,45.11,104.56,133.14,45.98,39.75,101.94,67.42,53.5,88.95,29.06,82.03,88.39,488.92,417.98,228.69,354.53,248.29,564.43,536.61,274.28,547.5,571.34,Equal basal,4.40446410647374,5.3296816292733,5.48440939864394,5.76451088743946
Merged-chr17-70737567-2,chr17,70737447,70737689,+,944.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001347411, intron 9 of 14)","intron (NM_001347411, intron 9 of 14)",109209,NM_001164077,21815,Mm.101034,NM_009372,ENSMUSG00000047407,Tgif1,AA959811|AI462167|Tgif,TGFB-induced factor homeobox 1,protein-coding,8.27,6.09,5.05,6.66,8.08,7.08,8.61,5.36,0,0,0,0,0,0,0,0,23.78,38.77,3.91,15.63,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,2.77145739794256,2.75796035929763,4.34109540476746,3.3523266555138
Merged-chr1-64929247-4,chr1,64929093,64929389,+,944.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039493, intron 2 of 7)",RMER1B|Other|Other,27583,NM_001039493,241075,Mm.239534,NM_175509,ENSMUSG00000051344,Plekhm3,9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l,"pleckstrin homology domain containing, family M, member 3",protein-coding,17.79,14.1,13.46,9.03,17.77,10.61,28.35,14.81,0,0,0,0,0,0,0,0,34.35,72.99,19,31.25,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,3.7304338535215,3.87915078491306,5.03518095995274,4.51118388793002
Merged-chr11-118270413-4,chr11,118270233,118270605,+,944.041626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001033528, intron 13 of 20)","intron (NM_001033528, intron 13 of 20)",19825,NM_001033528,72344,Mm.232293,NM_001033528,ENSMUSG00000033909,Usp36,2700002L06Rik|mKIAA1453,ubiquitin specific peptidase 36,protein-coding,27.3,28.51,13.46,20.85,23.43,27.8,11.64,12.6,0,0,0,0,0,0,0,0,68.03,90.09,17.33,43.62,51.37,0,0,0,0,0,0,0,0,0,0,Equal basal,4.40473838573752,3.94826747355799,5.66285365566863,4.9711555476481
Merged-chr9-77825474-6,chr9,77825340,77825627,+,943.672241,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,70948,NM_010295,14629,Mm.89888,NM_010295,ENSMUSG00000032350,Gclc,D9Wsu168e|GLCL-H|Ggcs-hs|Glclc,"glutamate-cysteine ligase, catalytic subunit",protein-coding,8.69,2.88,1.68,7.62,33.52,49.03,33.92,21.43,41.82,22.55,27.28,22.82,58.08,110.41,146.26,41.2,19.15,28.51,23.48,65.11,76.31,208.98,274.16,151.29,204.67,255.38,695.87,658.77,428.56,500.98,724.63,High basal,2.26228539996262,4.8207825166121,3.98424019736399,5.48592907551524
Merged-chr11-54628510-4,chr11,54628358,54628712,+,943.049988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001252494, intron 11 of 28)","intron (NM_001252494, intron 11 of 28)",32389,NM_001252497,192786,Mm.254404,NM_175258,ENSMUSG00000037533,Rapgef6,A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052,Rap guanine nucleotide exchange factor (GEF) 6,protein-coding,13.65,22.11,9.09,13.84,50.69,44.98,32.4,18.9,0,0,0,0,0,0,0,0,51.52,53.6,19,71.62,60.44,0,0,0,0,0,0,0,0,0,0,High basal,3.78779020190533,4.87952318970455,5.10184550480144,5.32288573211307
Merged-chr10-115311462-4,chr10,115311277,115311618,+,942.645813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_024454, intron 1 of 6)","intron (NM_024454, intron 1 of 6)",4144,NM_024454,216344,Mm.21936,NM_024454,ENSMUSG00000020132,Rab21,9630024B22,"RAB21, member RAS oncogene family",protein-coding,11.58,6.09,13.46,20.68,12.12,21.23,31.89,11.97,0,0,0,0,0,0,0,0,68.03,77.55,12.86,31.25,45.33,0,0,0,0,0,0,0,0,0,0,Equal basal,3.59075962172497,3.96977384527545,5.55697507576645,4.62104574563069
Merged-chr5-66114317-4,chr5,66114139,66114465,+,941.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001127382, intron 2 of 7)","intron (NM_001127382, intron 2 of 7)",-16123,NM_139065,245945,Mm.36863,NM_139065,ENSMUSG00000070780,Rbm47,9530077J19Rik,RNA binding motif protein 47,protein-coding,9.93,13.78,10.43,12.71,26.66,17.18,19.74,16.07,0,0,0,0,2.42,0,0,0,29.06,65,15.65,33.86,49.11,0,0,0,14.62,0,0,4.36,0,17.89,34.84,Equal basal,3.54645552446407,4.08910457672558,4.83830355330097,4.78537742695241
Merged-chr8-92881431-9,chr8,92881202,92881722,+,941.648132,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357375, intron 7 of 12)","intron (NM_001357375, intron 7 of 12)",-19933,NM_027112,69543,Mm.440514,NM_027112,ENSMUSG00000078144,Capns2,2310005G05Rik|30K-2,"calpain, small subunit 2",protein-coding,6.21,17.3,5.38,11.57,54.73,56.61,41.51,14.49,103.32,90.21,95.47,38.04,244.4,225.23,261.5,172.3,31.04,47.9,38.01,70.32,89.15,429.78,377.53,214.61,296.05,170.25,734.53,746.02,479.99,629.8,989.4,High basal,3.23223496875681,4.98669376984447,4.67040647184629,5.8219360791522
Merged-chr4-33265300-7,chr4,33264961,33265636,+,941.442871,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR20C2_MM|LTR|ERVK,-16511,NM_001033225,108767,Mm.27769,NM_001033225,ENSMUSG00000040128,Pnrc1,5730463C12Rik|B4-2|PRR2|Prol2,proline-rich nuclear receptor coactivator 1,protein-coding,65.36,43.25,43.08,50.38,83.4,61.16,80.49,62.7,68.88,189.45,27.28,60.87,75.01,66.25,106.37,67.42,149.27,144.84,42.48,71.62,70.26,579.61,579.77,249.8,383.77,432.73,127.58,235.59,137.14,282.69,306.58,Equal basal,5.56784348217424,5.90074339015074,6.55893152930814,5.77070281671216
Merged-chr14-16240195-4,chr14,16240015,16240357,+,941.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_001359883, exon 3 of 3)","3' UTR (NM_001359883, exon 3 of 3)",3145,NM_001359883,71147,Mm.197960,NM_027695,ENSMUSG00000021786,Oxsm,4933425A18Rik|C80494,"3-oxoacyl-ACP synthase, mitochondrial",protein-coding,14.48,15.7,11.11,8.5,20.6,30.83,25.82,16.38,0,0,0,0,0,0,0,0,39.63,60.44,15.09,37.11,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.59435366885975,4.30164888333757,5.00222928209917,4.89661014759937
Merged-chr8-25062108-4,chr8,25061971,25062231,+,941.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_031257, intron 5 of 11)","intron (NM_031257, intron 5 of 11)",-23139,NM_001081187,330723,Mm.334452,NM_001081187,ENSMUSG00000037406,Htra4,B430206E18Rik,HtrA serine peptidase 4,protein-coding,19.44,19.54,17.16,23.04,26.25,26.79,18.73,16.7,0,0,0,0,0,0,0,0,52.84,83.25,10.06,36.46,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.25783887543676,4.22412017112814,5.42886513186198,4.61165645413476
Merged-chr16-25042152-4,chr16,25041960,25042336,+,941.041687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-17491,NR_040374,319487,Mm.137341,NR_040374,ENSMUSG00000096960,A230028O05Rik,-,RIKEN cDNA A230028O05 gene,ncRNA,16.13,15.7,18.51,16.74,22.01,28.3,15.19,5.99,0,0,0,0,0,0,0,0,70.67,78.69,8.94,47.53,44.57,0,0,0,0,0,0,0,0,0,0,Equal basal,4.03407577998649,3.77768116127458,5.59421513968702,4.64462651507007
Merged-chr13-88810269-3,chr13,88810116,88810461,+,940.555542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11184,NM_010103,13612,Mm.125580,NM_010103,ENSMUSG00000034488,Edil3,Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc,EGF-like repeats and discoidin I-like domains 3,protein-coding,7.45,0.64,6.06,6.13,17.97,18.2,30.37,11.34,0,0,0,0,0,0,0,0,21.14,67.29,14.53,48.83,52.13,0,0,0,0,0,0,0,0,0,0,High basal,2.30457243672426,4.01485175411412,4.64497891375372,4.94981508805423
Merged-chr4-119178483-7,chr4,119178247,119178645,+,940.514282,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"exon (NM_013848, exon 13 of 13)","exon (NM_013848, exon 13 of 13)",-4251,NM_001145936,195522,Mm.169620,NM_183140,ENSMUSG00000045268,Zfp691,6430544H17Rik|Znf691,zinc finger protein 691,protein-coding,4.96,9.61,8.41,9.99,138.94,90.98,146.8,63.33,46.74,49.62,72.74,15.22,205.69,260.57,181.72,262.2,34.35,38.77,49.75,95.71,108.04,256.29,247.19,42.22,222.95,85.13,471.64,602.05,281.14,579.7,647.99,High basal,3.0713612800524,6.44696958571486,4.59405994136529,6.18619201364457
Merged-chr8-111182273-4,chr8,111182107,111182418,+,940.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009149, intron 9 of 25)","intron (NM_009149, intron 9 of 25)",-36764,NR_040364,434350,Mm.442061,NR_040363,NA,9430091E24Rik,-,RIKEN cDNA 9430091E24 gene,ncRNA,16.96,11.53,5.72,20.94,23.43,20.72,30.37,11.34,0,0,0,0,0,0,0,0,58.12,52.46,17.33,28.65,53.64,0,0,0,0,0,0,0,0,0,0,Equal basal,3.63487087597394,4.14424955801711,5.17171160538453,4.79651656229509
Merged-chr2-23021825-4,chr2,23021590,23022006,+,940.041626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001077190, intron 1 of 10)",RMER19B|LTR|ERVK,18443,NM_001077192,11308,Mm.205647,NM_007380,ENSMUSG00000058835,Abi1,E3B1|NAP1|Ssh3bp1|abi-1,abl-interactor 1,protein-coding,14.89,24.67,37.36,24.89,19.99,19.21,36.95,18.9,0,0,0,0,0,0,0,0,88.51,111.76,12.86,55.34,61.95,0,0,0,0,0,0,0,0,0,0,Equal basal,4.55726702434018,4.3057258823902,6.00204057542509,5.03345807642951
Merged-chr15-54780932-2,chr15,54780789,54781053,+,940,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,34993,NM_010930,18133,Mm.5167,NM_010930,ENSMUSG00000037362,Nov,C130088N23Rik|CCN3,nephroblastoma overexpressed gene,protein-coding,2.9,5.13,3.03,6.92,6.46,7.58,7.59,11.34,0,0,0,0,0,0,0,0,30.38,29.65,3.91,18.23,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,2.23998085948072,2.90967758876476,4.32551178726616,3.38079748987448
Merged-chr4-135440199-4,chr4,135440033,135440431,+,939.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1C1|LTR|ERVL-MaLR,-6427,NM_022980,53902,Mm.331970,NM_022980,ENSMUSG00000059713,Rcan3,AU041093|Csp3|Dscr1l2,regulator of calcineurin 3,protein-coding,25.24,14.42,17.5,15.6,34.94,25.78,16.7,21.11,0,0,0,0,0,0,0,0,58.12,83.25,17.33,67.06,59.68,0,0,0,0,0,0,0,0,0,0,Equal basal,4.12585026795761,4.35017104047375,5.49594394575872,5.24323490225179
Merged-chr4-3651680-6,chr4,3651504,3651886,+,939.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4811,NR_040643,70143,Mm.417835,NR_040643,ENSMUSG00000085394,2210414B05Rik,-,RIKEN cDNA 2210414B05 gene,ncRNA,19.86,10.25,17.5,19.63,10.1,15.16,35.94,23.32,44.28,31.57,81.83,57.06,36.3,48.58,0,71.17,48.88,65,17.33,49.48,43.82,272.06,251.68,94.99,171.78,297.94,189.43,235.59,171.43,89.46,125.42,Equal basal,4.02278535077273,4.06685914846396,5.19991878988148,4.95585072406808
Merged-chr8-106972075-6,chr8,106971869,106972277,+,939.138916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009229, intron 1 of 6)","intron (NM_009229, intron 1 of 6)",36323,NM_009229,20650,Mm.30228,NM_009229,ENSMUSG00000041308,Sntb2,Snt2,"syntrophin, basic 2",protein-coding,17.38,17.62,17.5,18.4,28.07,50.54,27.33,18.27,39.36,58.64,36.37,60.87,14.52,48.58,93.08,44.95,62.09,65,14.53,64.46,74.04,185.32,143.82,137.21,120.61,0,123.71,82.89,120,114.51,97.55,Equal basal,4.12868015290606,4.64740952588581,5.36825489120089,5.24510388195507
Merged-chr8-26696886-7,chr8,26696587,26697093,+,938.797607,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,127583,NR_045904,72316,Mm.490534,NR_045904,ENSMUSG00000100335,2310008N11Rik,-,RIKEN cDNA 2310008N11 gene,ncRNA,7.86,21.14,21.2,13.67,11.11,18.2,11.14,10.71,115.62,76.68,150.02,95.1,111.31,101.58,163.99,63.68,51.52,75.27,7.83,25.39,25.69,693.96,687.64,348.31,650.57,461.1,463.91,492.98,329.14,636.96,355.35,Equal basal,3.87904633983721,3.50064845528935,5.33997428360649,4.04123694392301
Merged-chr11-119677343-4,chr11,119677198,119677483,+,938,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028898, intron 3 of 33)","intron (NM_028898, intron 3 of 33)",74435,NM_028898,74370,Mm.209933,NM_028898,ENSMUSG00000025583,Rptor,4932417H02Rik|Rap|Raptor|mKIAA1303,"regulatory associated protein of MTOR, complex 1",protein-coding,8.69,10.25,8.75,14.11,20.8,16.68,18.73,14.18,0,0,0,0,0,0,0,0,45.57,72.99,17.33,37.76,31.73,0,13.48,3.52,0,42.56,0,13.09,3.43,0,0,Equal basal,3.38712978359225,3.91913580428378,5.2323174830283,4.6803481220347
Merged-chr4-139203550-4,chr4,139203380,139203733,+,937.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001271405, intron 1 of 8)",ID_B1|SINE|B4,9445,NM_001271405,12345,Mm.2945,NM_009798,ENSMUSG00000028745,Capzb,1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1,"capping protein (actin filament) muscle Z-line, beta",protein-coding,14.07,16.02,5.05,12,25.44,24.77,19.24,15.75,0,0,0,0,0,0,0,0,36.33,65,15.09,50.78,57.42,0,0,0,0,0,0,0,0,0,0,Equal basal,3.45975092277933,4.19053555092836,4.99269017311041,5.03076172452187
Merged-chr10-93357395-3,chr10,93357219,93357560,+,937.455566,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,21178,NR_038014,432488,Mm.32833,NR_038014,NA,Gm17745,Gm3546,"predicted gene, 17745",ncRNA,19.86,12.81,9.76,15.07,0.81,0.51,0,1.26,24.6,22.55,27.28,22.82,9.68,0,0,0,71.33,124.31,1.68,0,1.51,205.03,206.74,84.44,73.1,227.01,23.2,26.18,0,14.31,27.87,Low basal,3.79850691405507,0.485918627655982,5.92468737713139,0.921065903801816
Merged-chr8-40598618-9,chr8,40598307,40598982,+,936.296326,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001040699, intron 3 of 13)","intron (NM_001040699, intron 3 of 13)",36148,NM_001040699,54384,Mm.294871,NM_019433,ENSMUSG00000039431,Mtmr7,-,myotubularin related protein 7,protein-coding,11.17,12.81,15.14,16.74,42.61,45.49,40.5,29.93,211.57,243.58,159.12,64.67,169.39,397.47,119.67,232.23,43.59,87.81,28.51,68.36,82.35,993.62,948.31,538.3,994.14,489.48,1295.09,1055.77,695.99,1245.29,1038.17,High basal,3.77760011855992,5.05943060058587,5.33167474936256,5.635761520071
Merged-chr17-74710992-7,chr17,74710787,74711208,+,936.019043,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-6753,NM_152817,74196,Mm.209503,NM_152817,ENSMUSG00000024078,Ttc27,2610511O17Rik,tetratricopeptide repeat domain 27,protein-coding,6.62,15.38,6.73,11.39,74.32,92.49,68.84,67.74,39.36,45.11,104.56,45.65,60.5,176.65,155.13,206.01,33.69,60.44,32.98,70.97,73.28,212.92,188.76,119.62,219.29,141.88,301.54,257.4,250.28,311.32,355.35,High basal,3.29772553022541,5.9831032761574,4.88927249703987,5.66679533999766
Merged-chr17-63896039-4,chr17,63895898,63896183,+,936,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"5' UTR (NM_001286415, exon 2 of 18)","5' UTR (NM_001286415, exon 2 of 18)",17974,NM_001286415,14158,Mm.23039,NM_008000,ENSMUSG00000000127,Fer,AV082135|C330004K01Rik|Fert|Fert2,fer (fms/fps related) protein kinase,protein-coding,16.13,11.85,15.82,17.09,9.69,22.74,19.74,6.93,0,0,0,0,0,0,0,0,57.46,54.74,15.09,24.09,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.89107845720045,3.56838471654056,5.19336326992175,4.46162949372036
Merged-chr1-138923085-4,chr1,138922942,138923286,+,935.791687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx8|LINE|L1,-40595,NM_001166501,329260,Mm.337604,NM_181347,ENSMUSG00000056268,Dennd1b,4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik,DENN/MADD domain containing 1B,protein-coding,20.68,19.54,23.56,28.83,20.8,20.22,33.41,10.4,0,0,0,0,0,0,0,0,68.69,88.95,10.62,41.02,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.47990899094323,4.09419399829391,5.66067690500144,4.566538707824
Merged-chr1-85985934-4,chr1,85985769,85986090,+,935.733337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-24874,NM_001033290,227326,Mm.244158,NM_001033290,ENSMUSG00000049608,Gpr55,CTFL|Gm218|Lpir1,G protein-coupled receptor 55,protein-coding,12,19.86,12.79,13.14,43.01,26.79,41,12.92,0,0,0,0,0,0,0,0,35.01,85.53,17.89,46.23,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,3.82008529026857,4.57781153664278,5.16025516239697,5.00597706889544
Merged-chr9-86631326-4,chr9,86631157,86631475,+,934.916626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008615, intron 6 of 13)","intron (NM_008615, intron 6 of 13)",55961,NM_001198933,17436,Mm.148155,NM_008615,ENSMUSG00000032418,Me1,D9Ertd267e|Mdh-1|Mod-1|Mod1,"malic enzyme 1, NADP(+)-dependent, cytosolic",protein-coding,9.52,12.17,14.81,19.63,20.19,10.11,24.8,12.92,0,0,0,0,0,0,0,0,33.69,80.97,16.77,35.16,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,3.76266782302075,3.82243962285156,5.09488163079849,4.78147446994206
Merged-chr12-112631640-4,chr12,112631436,112631796,+,934.770813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_007421, intron 2 of 12)","intron (NM_007421, intron 2 of 12)",11569,NM_007421,11565,Mm.3440,NM_007421,ENSMUSG00000011148,Adssl1,AI528595|Adss|Adss1,adenylosuccinate synthetase like 1,protein-coding,18.2,19.86,16.83,19.54,19.79,19.21,13.16,16.7,0,0,0,0,0,0,0,0,87.85,117.46,14.53,34.51,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.19694092905145,3.913212519685,6.0320610692472,4.48698741768818
Merged-chr1-171366111-5,chr1,171365911,171366311,+,934.533325,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4062,NM_027893,71740,Mm.263414,NM_027893,ENSMUSG00000006411,Nectin4,1200017F15Rik|Prr4|Pvrl4,nectin cell adhesion molecule 4,protein-coding,1.65,1.6,4.04,1.4,68.86,67.73,95.67,63.65,0,81.19,68.19,0,331.52,317.98,248.2,415.77,9.25,6.84,57.01,105.47,104.26,134.06,148.31,14.07,43.86,163.16,1314.42,1278.27,658.28,984.06,1414.43,High basal,1.49661693794184,5.94047780216102,2.60390791480151,6.2801068979183
Merged-chr15-79455001-4,chr15,79454854,79455125,+,934.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-12846,NM_001359863,27373,Mm.30199,NM_013767,ENSMUSG00000022433,Csnk1e,AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau,"casein kinase 1, epsilon",protein-coding,11.58,14.42,8.08,15.07,21,25.27,26.83,12.6,0,0,0,0,0,0,0,0,33.03,55.88,11.74,33.2,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,3.59911848364151,4.16967749152902,4.82065047772397,4.558709781625
Merged-chr10-78160737-4,chr10,78160382,78161456,+,934.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,8849,NM_138601,28295,Mm.268691,NM_138601,ENSMUSG00000053329,D10Jhu81e,C21orf33|ES1,"DNA segment, Chr 10, Johns Hopkins University 81 expressed",protein-coding,17.79,25.95,17.84,19.98,18.98,9.6,27.33,18.9,0,0,0,0,0,0,0,0,103.04,108.34,10.06,57.29,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.29108536431671,3.94593850696961,6.08806533495906,4.82282590777662
Merged-chr9-106261269-6,chr9,106261063,106261442,+,933.833313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-13298,NM_020559,11655,Mm.290578,NM_020559,ENSMUSG00000032786,Alas1,ALAS|ALAS-N|Alas-1|Alas-h,aminolevulinic acid synthase 1,protein-coding,2.9,16.34,2.02,3.24,37.36,47.01,46.06,37.49,31.98,90.21,81.83,19.02,79.85,83.91,31.03,56.19,38.97,52.46,28.51,97.66,112.57,339.09,364.04,284.98,339.91,383.07,487.11,876.9,390.85,687.05,494.7,High basal,2.3019482007708,5.14187775195397,4.89150320501851,5.95262361045041
Merged-chr2-93217239-4,chr2,93217051,93217407,+,933.645813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_183180, intron 5 of 9)","intron (NM_183180, intron 5 of 9)",29681,NM_001025246,277414,Mm.41033,NM_001025246,ENSMUSG00000068735,Trp53i11,Tp53i11,transformation related protein 53 inducible protein 11,protein-coding,10.34,26.27,20.19,12.18,37.36,36.39,37.96,13.23,0,0,0,0,0,0,0,0,62.09,118.61,26.83,57.95,81.59,0,0,0,0,0,0,0,0,0,0,Equal basal,3.99325659688424,4.63062111569158,5.79319868540285,5.52513653400883
Merged-chr2-160214240-3,chr2,160214098,160214429,+,933.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,113231,NM_001033411,329554,Mm.291144,NM_001033411,ENSMUSG00000074623,Gm826,-,predicted gene 826,protein-coding,27.72,30.11,29.95,27.6,19.59,30.33,38.47,27.73,0,0,0,0,0,0,0,0,83.22,131.15,14.53,83.34,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,4.79438298463266,4.60714442139786,6.07203876752702,5.42526827656765
Merged-chr7-19467756-4,chr7,19467618,19467927,+,932.958374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ID4|SINE|ID,-9278,NM_172279,232944,Mm.260504,NM_172279,ENSMUSG00000030397,Mark4,2410090P21Rik|C79806|Markl1,MAP/microtubule affinity regulating kinase 4,protein-coding,10.34,17.62,4.38,10.51,27.87,33.36,22.27,15.44,0,0,0,0,0,0,0,0,43.59,47.9,13.97,76.83,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.28411528921984,4.3674592281692,4.90640583914975,5.18420019065823
Merged-chr4-139213270-8,chr4,139212935,139213476,+,932.775024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001271405, intron 1 of 8)","intron (NM_001271405, intron 1 of 8)",19094,NM_001271405,12345,Mm.2945,NM_009798,ENSMUSG00000028745,Capzb,1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1,"capping protein (actin filament) muscle Z-line, beta",protein-coding,11.58,14.74,8.08,13.84,29.08,25.78,36.45,14.18,123,90.21,13.64,110.32,152.45,101.58,172.85,149.83,33.69,41.06,15.65,38.41,68.75,240.52,292.13,158.32,204.67,212.82,448.45,584.6,390.85,483.09,543.47,Equal basal,3.58539636338822,4.42533415271259,4.62005186429935,5.00181744243271
Merged-chr1-177260585-4,chr1,177260401,177260748,+,932.68335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11807,NM_011785,23797,Mm.235194,NM_011785,ENSMUSG00000019699,Akt3,AI851531|D930002M15Rik|Nmf350,thymoma viral proto-oncogene 3,protein-coding,15.72,17.3,12.79,16.12,26.45,30.83,20.25,11.97,0,0,0,0,0,0,0,0,37.65,91.23,12.3,46.23,74.79,0,0,0,0,0,0,0,0,0,0,Equal basal,3.94365501664538,4.20276693209197,5.25644086766987,5.01763032184252
Merged-chr4-102646456-4,chr4,102646292,102646674,+,932.270813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,56640,NM_001177981,18578,Mm.20181,NM_019840,ENSMUSG00000028525,Pde4b,Dpde4|R74983|dunce,"phosphodiesterase 4B, cAMP specific",protein-coding,20.27,8.65,18.51,15.51,23.02,25.27,21.26,14.49,0,0,0,0,0,0,0,0,49.54,59.3,15.09,32.55,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.88717453534769,4.17562115189141,5.14497692984057,4.79838660524692
Merged-chr12-79168105-4,chr12,79167964,79168233,+,932.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_016800, intron 1 of 5)","intron (NM_016800, intron 1 of 5)",4360,NM_016800,53612,Mm.265929,NM_016800,ENSMUSG00000021124,Vti1b,AU015348|GES30|MVti1b|SNARE|Vti1-rp1,vesicle transport through interaction with t-SNAREs 1B,protein-coding,13.65,12.17,3.7,21.91,1.62,1.01,1.01,2.52,93.48,13.53,81.83,91.3,24.2,26.5,26.59,37.46,44.91,53.6,0,1.95,0.76,453.44,296.63,204.06,281.43,241.19,104.38,43.63,20.57,60.83,90.58,Low basal,3.4565829873772,1.17622371858038,5.00564111256806,0.637046467149282
Merged-chr11-109367017-4,chr11,109366845,109367207,+,932.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010303, intron 2 of 3)","intron (NM_010303, intron 2 of 3)",-3372,NR_038097,100036768,Mm.467767,NR_038097,ENSMUSG00000056687,Gm11696,-,predicted gene 11696,ncRNA,13.65,27.23,7.4,11.3,23.22,25.78,21.26,16.07,7.38,0,27.28,0,0,0,26.59,0,75.3,101.5,11.74,61.2,58.17,0,0,0,0,0,0,0,0,0,0,Equal basal,3.73662099372366,4.20397305460054,5.81904979020575,5.00991736739147
Merged-chr3-60538737-8,chr3,60538520,60538941,+,931.799988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001310514, intron 2 of 8)","intron (NM_001310514, intron 2 of 8)",37551,NM_001253708,56758,Mm.255723,NM_020007,ENSMUSG00000027763,Mbnl1,Mbnl|mKIAA0428,muscleblind like splicing factor 1,protein-coding,14.48,12.81,9.42,12.88,37.36,38.41,30.88,19.53,76.26,9.02,95.47,41.85,116.15,132.49,163.99,108.62,40.95,72.99,21.8,63.8,47.6,228.69,130.34,130.18,149.85,156.07,274.48,218.13,188.57,178.92,125.42,High basal,3.62698259497632,4.70988079878779,5.15754583197327,5.22025938431839
Merged-chr2-11524052-4,chr2,11523879,11524219,+,931.650024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001177758, intron 1 of 14)","intron (NM_001177758, intron 1 of 14)",-21959,NM_001177757,170768,Mm.19669,NM_133232,ENSMUSG00000026773,Pfkfb3,E330010H22Rik|iPFK-2|uPFK-2,"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3",protein-coding,24.82,34.28,11.78,9.46,39.98,42.96,49.1,34.34,0,0,0,0,0,0,0,0,64.73,104.92,40.24,69.01,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,4.11722670666113,5.12695511890522,5.73558324911544,5.65682831885382
Merged-chr5-124047166-8,chr5,124046957,124047432,+,931.604187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L2b|LINE|L2,-14934,NM_177876,330192,Mm.4079,NM_177876,ENSMUSG00000066278,Vps37b,2300007F24Rik|AI415429|BC026744,vacuolar protein sorting 37B,protein-coding,7.86,8.33,7.07,16.04,40.19,31.84,40.5,19.53,95.94,108.26,90.92,95.1,111.31,189.9,217.18,280.93,30.38,36.49,18.44,55.34,66.48,307.55,350.56,151.29,244.88,340.51,552.83,536.61,277.71,318.48,466.83,High basal,3.24673775215259,4.76407805254728,4.46751493821143,5.23245632658863
Merged-chr5-43082437-2,chr5,43082246,43082656,+,931.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-151012,NM_175937,231207,Mm.7233,NM_175937,ENSMUSG00000039782,Cpeb2,A630055H10Rik|Cpe-bp2,cytoplasmic polyadenylation element binding protein 2,protein-coding,9.1,6.73,11.11,13.14,8.08,16.17,28.35,8.19,0,22.55,0,3.8,0,0,26.59,0,43.59,55.88,6.15,16.93,13.6,0,0,0,0,0,0,0,0,0,0,Equal basal,3.31604366754102,3.58834389690103,5.01386276107191,3.46945400011549
Merged-chr18-62235588-2,chr18,62235472,62235725,+,931.25,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,55498,NM_001013754,225609,Mm.296917,NM_001013754,ENSMUSG00000054589,Gm9949,EG225609,predicted gene 9949,protein-coding,3.31,3.2,3.37,3.24,1.62,2.02,0.51,1.89,14.76,0,0,45.65,12.1,0,0,0,17.83,33.07,1.68,1.3,0,264.18,211.23,109.07,95.03,340.51,50.26,43.63,0,21.47,27.87,Equal basal,2.01715574642418,1.04961999430492,4.03741318788154,0.905330836915187
Merged-chr11-116071649-4,chr11,116071447,116071819,+,930.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001009573, intron 13 of 32)","intron (NM_001009573, intron 13 of 32)",6328,NM_001009573,70450,Mm.259460,NM_001009573,ENSMUSG00000057948,Unc13d,2610108D09Rik|Jinx|Munc13-4|mFLJ00067,unc-13 homolog D (C. elegans),protein-coding,7.86,16.66,3.37,8.59,22.62,17.69,20.25,18.9,0,0,0,0,0,0,0,0,40.95,55.88,15.09,37.76,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.06162939643581,4.11248532370944,4.97019214138244,4.72425851579255
Merged-chr13-112343794-6,chr13,112343596,112343957,+,929.951965,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001168403, intron 6 of 11)","intron (NM_001168403, intron 6 of 11)",55258,NM_001168404,77318,Mm.159895,NM_029898,ENSMUSG00000049985,Ankrd55,C030011J08Rik,ankyrin repeat domain 55,protein-coding,29.37,11.85,11.11,15.07,8.89,28.81,37.46,13.23,39.36,4.51,0,7.61,48.4,4.42,35.46,44.95,71.33,79.83,17.89,44.92,52.88,149.83,125.84,77.4,142.54,177.35,289.95,279.21,212.57,246.91,236.9,Equal basal,3.93779194145743,4.06412824585567,5.61094627584638,5.01311781183101
Merged-chr17-88112028-4,chr17,88111895,88112194,+,929.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13468,NM_001190356,225058,Mm.312053,NM_001190356,NA,Gm4832,EG225058,predicted gene 4832,protein-coding,12.82,24.35,12.12,6.66,35.95,44.98,23.79,13.86,0,0,0,0,0,0,0,0,48.88,96.94,12.3,55.99,69.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.67423964517175,4.54177457996556,5.48174289603173,5.07288126586255
Merged-chr7-128728897-4,chr7,128728753,128729040,+,927.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145955, intron 1 of 15)",L1MD|LINE|L1,11533,NM_145955,210711,Mm.58882,NM_145955,ENSMUSG00000048170,Mcmbp,1110007A13Rik|AU017382|BC025641|MCM-BP,minichromosome maintenance complex binding protein,protein-coding,21.51,10.25,11.78,17.7,23.22,18.7,12.15,12.92,0,0,0,0,0,0,0,0,48.88,74.13,11.74,37.76,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.87143940664468,3.83150066858967,5.29226332785906,4.49106561994376
Merged-chr3-35764838-4,chr3,35764702,35764990,+,927.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_151627, intron 1 of 31)","intron (NR_151627, intron 1 of 31)",10783,NM_029570,76295,Mm.239416,NM_029570,ENSMUSG00000037400,Atp11b,1110019I14Rik|ATPIF|ATPIR|mKIAA0956,"ATPase, class VI, type 11B",protein-coding,10.76,4.49,3.37,8.67,24.23,31.34,9.62,15.12,0,0,0,0,0,0,0,0,56.14,102.64,18.44,50.78,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,2.76519476567735,4.00621549334785,5.61964147954648,5.0979034396042
Merged-chr9-122230908-7,chr9,122230714,122231108,+,926.928589,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001271873, intron 11 of 12)","intron (NM_001271873, intron 11 of 12)",43117,NR_106185,102465896,NA,NR_106185,ENSMUSG00000098922,Mir8106,Gm27594|mmu-mir-8106,microRNA 8106,ncRNA,14.07,8.01,4.04,11.04,12.32,25.78,23.79,14.49,24.6,63.15,68.19,110.32,62.92,145.74,66.48,123.61,35.01,38.77,19.56,36.46,32.49,421.89,386.51,242.76,475.14,482.39,432.99,497.35,308.57,572.55,550.44,Equal basal,3.1498292979488,3.99186764168946,4.6072737803443,4.73103994965563
Merged-chr1-136635884-4,chr1,136635724,136636014,+,926.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,10968,NM_001160251,226442,Mm.62521,NM_177643,ENSMUSG00000041483,Zfp281,Znf281,zinc finger protein 281,protein-coding,12,20.18,13.8,27.6,15.75,14.66,30.37,16.38,0,0,0,0,0,0,0,0,49.54,92.38,13.97,38.41,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,4.08962008492643,4.0144206176464,5.45703926702524,4.83984198877064
Merged-chr5-21692491-4,chr5,21692330,21692667,+,926.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001359965, intron 1 of 4)","intron (NM_001359965, intron 1 of 4)",8898,NM_001359964,242864,Mm.153292,NM_178728,ENSMUSG00000044968,Napepld,A530089G06|Mbldc1|NAPE-PLD,N-acyl phosphatidylethanolamine phospholipase D,protein-coding,4.55,11.53,12.12,9.46,17.17,17.18,25.31,12.92,0,0,0,0,0,0,0,0,31.7,45.62,18.44,29.95,23.42,0,0,0,0,0,0,0,0,0,0,Equal basal,3.19340685365486,3.95279014827747,4.6510621777304,4.46335302551324
Merged-chr9-44513326-7,chr9,44513142,44513491,+,926.585693,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"exon (NM_007551, exon 2 of 2)","exon (NM_007551, exon 2 of 2)",13105,NM_007551,12145,Mm.6246,NM_007551,ENSMUSG00000047880,Cxcr5,Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15,chemokine (C-X-C motif) receptor 5,protein-coding,31.85,54.78,24.57,22.61,50.89,64.7,54.16,25.21,46.74,49.62,86.38,79.89,45.98,97.16,119.67,56.19,70.67,133.43,35.21,76.83,70.26,102.52,260.67,87.96,146.2,85.13,204.89,170.14,92.57,153.87,292.64,Equal basal,4.91317566131943,5.28976956753852,5.96849156459085,5.71531195773112
Merged-chr17-29380671-13,chr17,29380175,29381111,+,926.420349,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L1MA4|LINE|L1,19729,NM_001159538,26382,Mm.279187,NM_013710,ENSMUSG00000024013,Fgd2,Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2,"FYVE, RhoGEF and PH domain containing 2",protein-coding,41.78,36.52,49.81,47.49,53.92,65.2,55.68,39.07,312.43,288.68,295.5,254.88,406.53,441.64,345.71,292.16,128.8,173.35,34.65,76.18,101.99,855.62,714.6,485.52,526.31,524.95,521.9,414.46,198.85,418.67,438.96,Equal basal,5.38076915029358,5.47535122748869,6.58172277224339,5.87994513970093
Merged-chr5-74820560-3,chr5,74820413,74820700,+,926.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-117653,NM_001159577,16924,Mm.440403,NM_010727,ENSMUSG00000029228,Lnx1,Lnx,ligand of numb-protein X 1,protein-coding,7.86,4.16,15.14,19.89,0.4,0,0,0.95,44.28,27.06,54.55,11.41,9.68,0,0,0,71.33,88.95,0,0.65,1.51,417.95,480.9,295.54,317.98,368.88,19.33,0,0,32.21,13.94,Low basal,3.34882506209387,0.286060689590651,5.68737382873685,0.535940839152047
Merged-chr10-80317209-4,chr10,80317045,80317417,+,926.229187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_011789, exon 14 of 14)","3' UTR (NM_011789, exon 14 of 14)",3317,NM_025521,66374,Mm.383824,NM_025521,ENSMUSG00000020133,2310011J03Rik,AI452186|AW545358,RIKEN cDNA 2310011J03 gene,protein-coding,9.52,9.29,11.78,10.51,22.62,31.84,25.82,17.01,0,0,0,0,0,0,0,0,33.69,57.02,20.12,55.34,34,0,0,0,0,0,0,0,0,0,0,High basal,3.36739047006315,4.35774612670707,4.84849000459859,4.95993639869155
Merged-chr10-122038756-3,chr10,122038618,122038903,+,925.911133,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081037, intron 1 of 21)",MLT1J|LTR|ERVL-MaLR,8555,NM_001242411,117600,Mm.288698,NM_001081037,ENSMUSG00000020121,Srgap1,4930572H05Rik|Arhgap13,SLIT-ROBO Rho GTPase activating protein 1,protein-coding,7.45,4.81,10.43,5.52,13.13,19.71,19.74,9.77,0,0,0,0,0,0,0,0,37.65,41.06,15.09,33.2,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,2.84263415779414,3.71179308884538,4.69728626413257,4.63762784660703
Merged-chr7-101466400-3,chr7,101466234,101466562,+,925.714294,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NR_152192, intron 3 of 31)","intron (NR_152192, intron 3 of 31)",-8978,NR_029791,387157,NA,NR_029791,ENSMUSG00000065446,Mir139,Mirn139|mir-139|mmu-mir-139,microRNA 139,ncRNA,10.34,11.85,7.07,19.19,2.83,6.57,2.02,7.88,14.76,0,54.55,22.82,7.26,0,53.19,0,69.35,68.43,3.35,1.3,8.31,307.55,211.23,151.29,190.06,113.5,81.18,52.35,34.29,57.25,125.42,Equal basal,3.5048104086364,2.17895344526957,5.4824647996799,2.07852268465502
Merged-chr13-85430230-4,chr13,85430069,85430377,+,925.479187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-140737,NM_145452,218397,Mm.259653,NM_145452,ENSMUSG00000021549,Rasa1,Gap|RasGAP|Rasa,RAS p21 protein activator 1,protein-coding,22.34,8.97,15.14,19.1,34.53,10.11,24.3,11.03,0,0,0,0,0,0,0,0,63.41,60.44,21.8,39.06,41.55,11.83,0,7.04,29.24,0,3.87,8.73,0,7.16,0,Equal basal,3.95404976514302,3.95039180292921,5.33209403320843,4.92724384594116
Merged-chr2-129385583-3,chr2,129385407,129385813,+,925.333313,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-14471,NM_008361,16176,Mm.222830,NM_008361,ENSMUSG00000027398,Il1b,IL-1beta|Il-1b,interleukin 1 beta,protein-coding,0.83,2.56,0.67,2.45,2.83,4.55,3.04,2.84,73.8,22.55,109.11,34.24,0,0,4.43,11.24,30.38,38.77,3.35,3.91,8.31,295.72,247.19,221.65,307.01,425.64,57.99,65.44,75.43,75.15,111.48,Equal basal,1.24626130429642,1.82763076445225,4.50925050561403,2.40940121440007
Merged-chr3-101600027-3,chr3,101599900,101600194,+,925,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_144900, intron 1 of 22)","intron (NM_144900, intron 1 of 22)",4660,NM_144900,11928,Mm.193670,NM_144900,ENSMUSG00000033161,Atp1a1,Atpa-1|BC010319,"ATPase, Na+/K+ transporting, alpha 1 polypeptide",protein-coding,7.86,8.33,8.08,12.53,22.42,13.65,24.3,12.29,0,0,0,0,0,0,0,0,36.99,29.65,15.65,22.79,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,3.22158500860443,3.92325658791745,4.46178350595569,4.35525644617031
Merged-chr1-64797407-4,chr1,64797277,64797551,+,924.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001039493, intron 7 of 7)","intron (NM_001039493, intron 7 of 7)",-59664,NM_022721,14367,Mm.150813,NM_022721,ENSMUSG00000045005,Fzd5,5330434N09Rik|AI427138|Fz-5|Fz5|mFz5,frizzled class receptor 5,protein-coding,22.34,17.62,17.84,22.34,14.14,17.18,16.7,13.55,0,0,0,0,0,0,0,0,51.52,72.99,15.09,35.16,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,4.27968726323664,3.75856318886223,5.318303135323,4.59443119570362
Merged-chr3-9886259-8,chr3,9886100,9886449,+,923.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-52595,NM_001195031,94212,Mm.23897,NM_053182,ENSMUSG00000027508,Pag1,Cbp|F730007C19Rik|Pag,phosphoprotein associated with glycosphingolipid microdomains 1,protein-coding,8.69,12.17,9.09,9.9,18.78,14.15,23.79,8.19,100.86,99.23,122.75,87.5,203.27,176.65,141.83,108.62,38.97,52.46,17.33,29.3,18.13,638.76,624.72,408.12,588.44,822.9,363.4,309.75,195.43,225.44,634.05,Equal basal,3.32517166732687,3.74757674108942,4.89150320501851,4.30934505730555
Merged-chr14-105297533-6,chr14,105297204,105298080,+,923.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029561, intron 4 of 7)",MTC|LTR|ERVL-MaLR,38969,NM_001190989,76273,Mm.290669,NM_029561,ENSMUSG00000053253,Ndfip2,0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165,Nedd4 family interacting protein 2,protein-coding,20.27,21.78,20.87,29.97,12.92,5.05,8.61,5.99,324.73,275.15,368.24,407.04,79.85,22.08,17.73,48.69,68.69,124.31,6.15,6.51,17.38,1403.69,1321.34,738.84,1268.25,978.96,208.76,109.07,106.28,139.56,222.96,Low basal,4.48126717164441,2.84351779211526,5.89799045339599,3.17066121062785
Merged-chr2-9926275-4,chr2,9926139,9926439,+,923.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_027748, intron 4 of 6)","intron (NM_027748, intron 4 of 6)",20140,NR_152218,100126244,Mm.86343,NR_152218,NA,Gm13262,-,predicted gene 13262,ncRNA,16.55,16.66,11.11,19.28,15.15,28.3,25.82,13.86,0,0,0,0,0,0,0,0,48.22,76.41,15.09,18.88,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95177683595725,4.11323656346523,5.30407093758999,4.42420561536329
Merged-chr6-87745490-5,chr6,87745260,87745854,+,923.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001159697, intron 2 of 7)","intron (NM_001159697, intron 2 of 7)",14688,NM_001159697,58229,Mm.333229,NM_021418,ENSMUSG00000068263,Efcc1,Ccdc48,EF hand and coiled-coil domain containing 1,protein-coding,12.41,19.86,16.15,29.27,40.59,14.15,31.89,20.48,66.42,40.6,27.28,22.82,55.66,48.58,26.59,0,60.77,88.95,17.33,61.85,67.24,74.92,53.93,87.96,105.99,42.56,96.65,43.63,51.43,93.04,41.81,Equal basal,4.19559124642335,4.41941115602657,5.57409080955951,5.26117816669355
Merged-chr12-73613337-6,chr12,73613142,73613483,+,923.027771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001313977, intron 2 of 14)","intron (NM_001313977, intron 2 of 14)",28516,NM_008856,18755,Mm.341677,NM_008856,ENSMUSG00000021108,Prkch,Pkch,"protein kinase C, eta",protein-coding,20.68,28.19,12.79,23.57,19.18,18.7,11.64,22.69,54.12,49.62,72.74,19.02,38.72,75.08,57.62,18.73,56.14,82.11,10.06,33.86,32.49,299.66,314.61,246.28,201.02,305.04,158.5,231.22,75.43,135.98,153.29,Equal basal,4.33275786759083,3.93910199188137,5.46177656639221,4.39283923722531
Merged-chr19-10833817-4,chr19,10833628,10834005,+,922.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MTC|LTR|ERVL-MaLR,-3758,NM_009852,12511,Mm.290897,NM_009852,ENSMUSG00000024670,Cd6,-,CD6 antigen,protein-coding,9.93,13.78,14.14,15.95,18.58,18.2,20.75,12.92,0,0,0,0,0,0,0,0,44.25,51.32,12.86,48.18,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.73739477661248,3.92708882999655,4.96494779466997,4.72819745854062
Merged-chr8-122436823-4,chr8,122436669,122437183,+,921.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_028354, intron 8 of 10)",(CGG)n|Simple_repeat|Simple_repeat,-3986,NM_007806,13057,Mm.271671,NM_007806,ENSMUSG00000006519,Cyba,b558|nmf333|p22-phox|p22phox,"cytochrome b-245, alpha polypeptide",protein-coding,21.1,25.63,19.52,16.3,21.2,18.2,15.19,11.34,0,0,0,0,0,0,0,0,63.41,96.94,8.38,24.74,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31849980040928,3.83756323057917,5.66493859998267,4.12251803783928
Merged-chr11-19998140-6,chr11,19997967,19998338,+,921.180542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"exon (NM_033523, exon 2 of 6)","exon (NM_033523, exon 2 of 6)",73710,NM_033523,114716,Mm.266627,NM_033523,ENSMUSG00000045671,Spred2,C79158,"sprouty-related, EVH1 domain containing 2",protein-coding,18.62,18.58,28.61,28.04,26.45,20.72,36.45,17.33,36.9,9.02,90.92,15.22,19.36,13.25,93.08,48.69,70.01,86.67,9.5,30.6,39.29,173.49,170.79,66.85,124.27,85.13,158.5,104.7,85.71,186.08,229.93,Equal basal,4.47959885863968,4.3834011296045,5.6557876409794,4.40839065541675
Merged-chr16-94590444-4,chr16,94590293,94590634,+,920.866699,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001113389, intron 1 of 11)","intron (NM_001113389, intron 1 of 11)",19556,NM_001113389,13548,Mm.310973,NM_007890,ENSMUSG00000022897,Dyrk1a,2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb,dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a,protein-coding,16.55,20.5,18.85,28.39,19.18,15.16,19.74,22.37,0,0,0,0,0,0,0,0,60.11,119.75,13.41,33.86,71.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.34476830630335,4.04701678933624,5.77711934371797,4.8879211372499
Merged-chr1-125468114-4,chr1,125467883,125468298,+,920.583374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-32363,NM_001205385,74117,Mm.183102,NM_023735,ENSMUSG00000026341,Actr3,1200003A09Rik|Arp3,ARP3 actin-related protein 3,protein-coding,19.86,15.38,10.43,24.53,46.25,36.39,31.89,18.9,0,0,0,0,0,0,0,0,56.8,82.11,18.44,50.78,78.57,0,0,0,0,0,0,0,0,0,0,Equal basal,4.04848119305005,4.76595946629687,5.47001198435742,5.27089741873625
Merged-chr1-173459013-2,chr1,173458887,173459136,+,920,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001013779, intron 5 of 8)","intron (NM_001013779, intron 5 of 8)",38407,NM_001013779,383619,Mm.131453,NM_001013779,ENSMUSG00000037860,Aim2,Gm1313|Ifi210,absent in melanoma 2,protein-coding,2.9,2.56,1.01,4.82,1.01,1.52,0.51,2.84,34.44,54.13,0,68.47,2.42,13.25,0,0,15.19,39.92,0,4.56,0,437.67,364.04,172.4,230.26,553.33,42.53,47.99,20.57,60.83,0,Equal basal,1.64928035705632,0.870212069770858,4.05995933712603,0.715707667661571
Merged-chr3-10419482-1,chr3,10419340,10419625,+,920,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_001127191, intron 6 of 6)",RSINE1|SINE|B4,20648,NM_029068,74718,Mm.440548,NM_029068,ENSMUSG00000027534,Snx16,4930522N22Rik|AI117577|AI747675,sorting nexin 16,protein-coding,2.9,0.64,1.35,1.66,3.23,0,3.04,3.15,0,0,0,0,0,0,0,0,25.1,27.37,0.56,3.26,5.29,0,0,0,0,0,0,0,0,0,0,Equal basal,1.22751062439003,1.39146313908167,4.13996111889834,1.61094609038511
Merged-chr17-88107820-3,chr17,88107653,88107949,+,919.944458,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,PB1D10|SINE|Alu,-17711,NM_001190356,225058,Mm.312053,NM_001190356,NA,Gm4832,EG225058,predicted gene 4832,protein-coding,3.72,8.01,5.38,4.64,17.77,13.65,25.82,6.93,0,0,0,0,0,0,0,0,17.17,28.51,18.44,22.79,34.75,0,0,0,0,0,0,0,0,0,0,High basal,2.51388344345233,3.68270839154793,3.91104774320095,4.51889408376616
Merged-chr6-97279688-8,chr6,97279455,97279996,+,919.87915,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-26945,NM_001081157,320502,Mm.68163,NM_001081157,ENSMUSG00000044086,Lmod3,5430424A14Rik,leiomodin 3 (fetal),protein-coding,14.48,19.86,21.54,16.39,31.3,26.79,20.75,15.75,125.46,99.23,204.58,133.14,225.04,181.07,84.21,164.81,47.56,59.3,15.65,35.16,54.4,772.82,826.96,330.72,471.48,539.14,823.45,889.99,517.71,654.85,745.53,Equal basal,4.13449914133944,4.30447791292702,5.11634517718213,4.85070095407333
Merged-chr11-108445442-4,chr11,108445259,108445627,+,919.083374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_029606, intron 5 of 27)","intron (NM_029606, intron 5 of 27)",20177,NM_029606,76380,Mm.344071,NM_029586,ENSMUSG00000020728,Cep112,1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco,centrosomal protein 112,protein-coding,12,17.94,11.11,18.31,21.81,18.2,34.42,16.7,0,0,0,0,0,0,0,0,54.16,71.85,8.94,52.09,56.66,0,0,0,0,0,0,0,0,0,0,Equal basal,3.83864909318295,4.25153593745539,5.34237369892374,4.79967484754181
Merged-chr4-141535451-6,chr4,141535314,141535581,+,918.388916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001347235, intron 1 of 14)","intron (NM_001347235, intron 1 of 14)",3150,NM_001347235,56381,Mm.299906,NM_019763,ENSMUSG00000040761,Spen,Mint|mKIAA0929,spen family transcription repressor,protein-coding,5.79,17.94,10.77,11.04,18.58,6.57,12.65,5.67,39.36,18.04,40.92,53.26,33.88,35.33,26.59,0,27.08,53.6,11.74,21.49,29.46,343.04,337.08,130.18,358.18,496.57,313.14,340.29,133.71,257.65,292.64,Equal basal,3.45075631922345,3.14550508940454,4.65472517016834,4.20914644470462
Merged-chr11-107124618-4,chr11,107124464,107124790,+,918.333374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001359590, intron 1 of 27)","intron (NM_001359590, intron 1 of 27)",7295,NM_176850,207165,Mm.343986,NM_176850,ENSMUSG00000040481,Bptf,9430093H17Rik|Falz,bromodomain PHD finger transcription factor,protein-coding,21.93,34.28,12.79,17.7,17.17,13.14,17.72,11.03,0,0,0,0,0,0,0,0,63.41,72.99,17.33,29.95,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.31389112850152,3.67900872584058,5.46454207854893,4.59453953836677
Merged-chr10-7940974-1,chr10,7940836,7941112,+,918,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_138667, intron 1 of 6)","intron (NM_138667, intron 1 of 6)",12091,NM_001359534,68652,Mm.193041,NM_138667,ENSMUSG00000015755,Tab2,1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733,TGF-beta activated kinase 1/MAP3K7 binding protein 2,protein-coding,4.96,2.56,1.35,3.59,4.24,1.52,3.04,3.15,0,0,0,0,0,0,0,0,19.15,30.79,1.68,7.81,7.55,0,0,0,0,0,0,0,0,0,0,Equal basal,1.876753933353,1.67020863950864,4.03657799369519,2.38389652664523
Merged-chr13-116951503-8,chr13,116951335,116951724,+,917.810425,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081009, intron 3 of 26)","intron (NM_001081009, intron 3 of 26)",73987,NM_001081009,52552,Mm.274466,NM_027272,ENSMUSG00000021725,Parp8,2810430O08Rik|ARTD16|D13Ertd275e,"poly (ADP-ribose) polymerase family, member 8",protein-coding,30.61,33,10.1,10.6,95.12,97.55,47.58,25.84,63.96,112.77,68.19,68.47,67.76,163.41,88.64,89.9,72,92.38,38.57,99.61,88.39,264.18,211.23,94.99,307.01,241.19,274.48,205.05,96,329.21,278.7,High basal,4.16947656605978,5.62090473323509,5.72059067863774,5.98966859291514
Merged-chr6-17509357-3,chr6,17509189,17509498,+,917.611084,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008591, intron 3 of 21)","intron (NM_008591, intron 3 of 21)",45386,NM_008591,17295,Mm.86844,NM_008591,ENSMUSG00000009376,Met,AI838057|HGF|HGFR|Par4|c-Met,met proto-oncogene,protein-coding,3.72,9.61,4.04,5.08,2.42,1.01,2.02,1.26,14.76,54.13,36.37,15.22,0,26.5,62.05,0,44.25,92.38,0.56,6.51,3.02,449.5,638.2,211.1,358.18,127.69,185.57,139.61,92.57,57.25,209.03,Equal basal,2.53110656264392,1.22309934667676,5.3780078449687,1.67162517619339
Merged-chr7-84211659-2,chr7,84211448,84211872,+,917.583374,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-59767,NM_133722,70178,Mm.23914,NM_133722,ENSMUSG00000038459,Abhd17c,2210412D01Rik|AL023007|Fam108c|Fam108c1,abhydrolase domain containing 17C,protein-coding,5.79,4.49,5.38,1.66,35.54,17.69,34.42,13.23,0,0,0,0,0,0,0,0,10.57,29.65,22.36,54.69,55.15,0,13.48,0,18.27,21.28,19.33,13.09,10.29,7.16,27.87,High basal,2.2387706823568,4.3279308524449,3.62028512318032,5.22845347534091
Merged-chr13-85223380-6,chr13,85223158,85223559,+,917.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_145452, intron 20 of 24)","intron (NM_145452, intron 20 of 24)",33973,NM_023243,66671,Mm.18474,NM_023243,ENSMUSG00000021548,Ccnh,6330408H09Rik|AI661354|AV102684|AW538719,cyclin H,protein-coding,37.23,55.1,37.02,26.11,0,1.01,2.53,0.63,154.98,139.83,218.22,167.38,65.34,132.49,106.37,116.12,108.98,142.55,0,1.95,0,473.15,435.95,288.5,339.91,489.48,166.24,78.53,58.28,75.15,236.9,Low basal,5.17426798941984,0.72069809076018,6.32313610093561,0.434789948558486
Merged-chr12-71864701-4,chr12,71864565,71864858,+,917,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026102, intron 1 of 25)","intron (NM_026102, intron 1 of 25)",-24832,NM_001286452,208846,Mm.87417,NM_026102,ENSMUSG00000034574,Daam1,-,dishevelled associated activator of morphogenesis 1,protein-coding,12.41,23.07,17.5,15.86,13.73,11.62,29.87,11.03,0,0,0,0,0,0,0,0,51.52,60.44,15.65,36.46,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,4.06156522673355,3.73470930132992,5.1858550899825,4.67875874684549
Merged-chr19-37508164-4,chr19,37507978,37508369,+,916.979187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-42245,NM_175353,107371,Mm.24865,NM_175353,ENSMUSG00000053799,Exoc6,4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15,exocyst complex component 6,protein-coding,9.93,12.17,12.12,13.49,19.39,19.21,23.79,9.14,0,0,0,0,0,0,0,0,38.31,45.62,15.65,34.51,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.59628500731122,3.88867953178987,4.78235893995968,4.73296095705285
Merged-chr6-146638640-7,chr6,146638347,146638837,+,916.804749,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-3987,NM_025315,108098,Mm.26212,NM_025315,ENSMUSG00000030291,Med21,0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7,mediator complex subunit 21,protein-coding,2.07,8.33,3.7,12.09,26.25,24.77,40.5,19.53,17.22,0,27.28,64.67,89.53,83.91,146.26,101.13,23.78,38.77,20.68,44.27,38.53,177.43,94.38,70.37,186.4,0,208.76,287.94,140.57,268.38,271.74,High basal,2.539504369699,4.52979950039749,4.34109540476746,4.92604171764195
Merged-chr6-31108078-4,chr6,31107879,31108282,+,916.56665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_110471, intron 3 of 3)","intron (NR_110471, intron 3 of 3)",-44987,NR_029532,387223,NA,NR_029532,ENSMUSG00000065604,Mir29b-1,Mirn29b|Mirn29b-1|mir-29b-1,microRNA 29b-1,ncRNA,12.41,27.55,14.14,13.23,22.82,25.27,17.21,12.29,0,0,0,0,0,0,0,0,77.94,88.95,10.62,52.74,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.98892592949887,4.03439475176885,5.7500891253925,4.6840299236563
Merged-chr15-59511647-6,chr15,59511505,59511827,+,916.455566,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_026746, intron 4 of 6)","intron (NM_026746, intron 4 of 6)",-136988,NM_144549,211770,Mm.40298,NM_144549,ENSMUSG00000032501,Trib1,A530090O15Rik|TRB-1|Trb1,tribbles pseudokinase 1,protein-coding,3.31,1.92,1.35,1.49,80.17,117.77,97.19,69,14.76,22.55,0,22.82,62.92,150.16,101.94,112.37,21.8,26.23,50.86,130.87,117.86,86.74,44.94,35.18,62.13,127.69,204.89,266.12,144,157.45,313.54,High basal,1.47050825189606,6.22441302917237,4.01510565288767,6.38672916759052
Merged-chr9-106258034-4,chr9,106257882,106258170,+,916.375,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLT2C1|LTR|ERVL,-10072,NM_020559,11655,Mm.290578,NM_020559,ENSMUSG00000032786,Alas1,ALAS|ALAS-N|Alas-1|Alas-h,aminolevulinic acid synthase 1,protein-coding,1.24,0.64,1.35,0.53,33.12,24.77,33.92,18.59,2.46,0,0,3.8,72.6,57.41,4.43,138.59,5.28,13.69,20.12,50.13,49.11,106.46,53.93,21.11,29.24,0,286.08,244.31,133.71,275.54,188.13,High basal,0.820551243702442,4.52039021867609,2.68806392696289,5.08433928705565
Merged-chr3-50402605-3,chr3,50402489,50402736,+,916.333313,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011990, intron 6 of 11)","intron (NM_011990, intron 6 of 11)",41001,NM_011990,26570,Mm.260988,NM_011990,ENSMUSG00000027737,Slc7a11,9930009M05Rik|AI451155|sut|xCT,"solute carrier family 7 (cationic amino acid transporter, y+ system), member 11",protein-coding,0.83,6.73,6.06,4.03,3.23,8.59,3.04,0.63,2.46,36.09,0,68.47,16.94,8.83,8.86,37.46,21.14,92.38,1.68,8.46,8.31,394.29,431.46,175.91,325.29,241.19,425.25,327.2,174.85,318.48,264.77,Equal basal,2.16151749245992,1.7793829625245,4.8684633372362,2.45574481179829
Merged-chr12-24597134-2,chr12,24596986,24597287,+,916.277771,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_145890, intron 6 of 13)","intron (NM_145890, intron 6 of 13)",16417,NM_145890,195733,Mm.263068,NM_145890,ENSMUSG00000020656,Grhl1,LBP-32|MGR|Tcfcp2l2,grainyhead like transcription factor 1,protein-coding,5.79,1.92,3.03,3.77,1.41,4.04,2.02,2.52,14.76,45.11,0,22.82,14.52,0,0,0,48.22,79.83,2.24,3.26,1.51,94.63,166.29,102.03,87.72,191.54,15.46,43.63,20.57,39.36,69.68,Equal basal,2.03413152460343,1.55682154259377,5.33495650849611,1.61722392444783
Merged-chr9-56207316-4,chr9,56207174,56207477,+,916.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_172924, exon 7 of 7)","exon (NM_172924, exon 7 of 7)",-46255,NM_019793,56434,Mm.28484,NM_019793,ENSMUSG00000032324,Tspan3,1700055K04Rik|TM4-A|Tm4sf8,tetraspanin 3,protein-coding,5.79,14.1,10.43,15.33,14.34,12.64,16.2,6.3,0,0,0,0,0,0,0,0,46.9,82.11,3.35,33.2,36.26,0,0,0,0,0,0,0,0,0,0,Equal basal,3.45612662467562,3.39990609758509,5.33536295495276,3.96682175857408
Merged-chr19-41331730-10,chr19,41331381,41331998,+,916.156921,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_031376, intron 3 of 16)","intron (NM_031376, intron 3 of 16)",53381,NM_031376,83490,Mm.222266,NM_031376,ENSMUSG00000025017,Pik3ap1,1810044J04Rik|BCAP,phosphoinositide-3-kinase adaptor protein 1,protein-coding,33.92,40.37,21.2,44.6,36.75,28.81,36.95,22.06,186.97,139.83,209.12,159.77,193.59,154.57,186.15,164.81,122.85,102.64,25.15,62.5,44.57,603.27,570.78,323.68,431.28,766.14,657.21,645.68,342.85,551.07,404.12,Equal basal,5.01899508916363,4.70472199866592,6.17505541222277,5.2467156718142
Merged-chr13-99028966-5,chr13,99028619,99029208,+,916.06665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-44348,NM_027064,69382,Mm.45466,NM_027064,ENSMUSG00000045022,1700024P04Rik,H2bl1|Subh2bv,RIKEN cDNA 1700024P04 gene,protein-coding,37.23,34.92,45.77,57.48,39.98,30.83,52.14,34.03,0,0,0,0,0,0,0,0,93.13,191.59,20.68,73.57,71.77,0,0,0,0,0,0,0,0,0,0,Equal basal,5.36254195356966,5.03080349792021,6.42224853713253,5.45569108849613
Merged-chr13-90057846-9,chr13,90057552,90058048,+,915.861755,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_028012, intron 3 of 7)",Charlie24|DNA|hAT-Charlie,31808,NM_028012,108138,Mm.37531,NM_028012,ENSMUSG00000021615,Xrcc4,2310057B22Rik|AW413319|AW545101,X-ray repair complementing defective repair in Chinese hamster cells 4,protein-coding,16.55,16.98,33.66,31.02,30.09,14.15,34.93,23.32,120.54,166.89,63.65,121.73,50.82,26.5,106.37,3.75,99.08,115.18,17.33,42.97,67.24,429.78,435.95,253.32,423.97,248.29,305.41,322.84,126.86,418.67,341.41,Equal basal,4.50651865908943,4.39687309824911,6.10363305142269,5.09044846337645
Merged-chr10-122575368-13,chr10,122574637,122576155,+,915.810242,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-5505,NR_040616,319272,Mm.411763,NR_040616,ENSMUSG00000112095,A130077B15Rik,-,RIKEN cDNA A130077B15 gene,ncRNA,19.03,13.46,26.92,34.09,38.17,26.79,21.26,28.04,184.51,121.79,227.31,251.07,232.3,176.65,292.52,295.91,104.36,153.96,15.65,50.78,65.73,1052.77,728.09,612.18,862.56,1347.85,1271.89,1143.02,805.7,1059.21,1114.82,Equal basal,4.43654787869068,4.58545229132792,6.34711491389494,5.11097523410581
Merged-chr18-69400116-7,chr18,69399975,69400295,+,915.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001361128, intron 3 of 19)","intron (NM_001361128, intron 3 of 19)",53975,NM_001361126,21413,Mm.4269,NM_013685,ENSMUSG00000053477,Tcf4,5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19,transcription factor 4,protein-coding,3.72,13.46,7.74,11.3,14.34,16.68,19.24,7.25,34.44,0,9.09,49.45,91.95,17.67,62.05,104.88,26.42,39.92,18.44,26.04,28.71,323.32,256.18,102.03,186.4,383.07,332.47,327.2,168,418.67,383.22,Equal basal,3.07693040058876,3.58281978682615,4.43312057206532,4.49193157011726
Merged-chr15-53386939-4,chr15,53386748,53387203,+,915,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-40792,NM_010162,14042,Mm.309395,NM_010162,ENSMUSG00000061731,Ext1,AA409028,exostoses (multiple) 1,protein-coding,14.89,15.38,17.5,24.36,22.82,26.28,32.9,17.64,0,0,0,0,0,0,0,0,56.14,70.71,15.65,34.51,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,4.13344838680268,4.39400707370939,5.35640186021656,4.90876173724188
Merged-chr8-57596146-4,chr8,57595975,57596314,+,914.791626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001167981, intron 1 of 11)","intron (NM_001167981, intron 1 of 11)",-55609,NR_040698,100502619,Mm.393851,NR_040698,NA,AW046200,-,expressed sequence AW046200,ncRNA,9.52,18.26,15.48,19.63,23.02,11.62,13.16,17.64,0,0,0,0,0,0,0,0,50.2,71.85,10.62,17.58,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.90731651331797,3.80802757543953,5.28897669076168,4.08524111316917
Merged-chr3-88522041-6,chr3,88521743,88522414,+,914.458313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-10317,NM_001029890,72640,Mm.275154,NM_001029890,ENSMUSG00000074480,Mex3a,2700083E18Rik|Gm411|Rkhd4,mex3 RNA binding family member A,protein-coding,22.75,16.98,23.56,24.45,24.03,24.77,47.58,33.08,0,0,0,0,0,0,0,0,66.71,95.8,17.33,46.88,73.28,0,0,0,0,0,0,0,0,0,0,Equal basal,4.40046125997296,4.7328447598975,5.6924208210635,5.17164640113967
Merged-chr4-33284656-4,chr4,33284422,33284866,+,914.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-25667,NM_011884,24018,Mm.240024,NM_011884,ENSMUSG00000028274,Rngtt,AU020997|HCE|MCE1,RNA guanylyltransferase and 5'-phosphatase,protein-coding,11.17,16.98,18.51,18.23,12.72,11.12,13.16,11.97,0,0,0,0,0,0,0,0,91.15,88.95,6.15,22.79,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.96577957894157,3.4726807436299,5.86120653069606,4.02555612677339
Merged-chr6-120866230-6,chr6,120866063,120866424,+,914.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153516, intron 4 of 6)","intron (NM_153516, intron 4 of 6)",30013,NM_153516,94044,Mm.27990,NM_153516,ENSMUSG00000009112,Bcl2l13,BCL-RAMBO|E430016C20Rik|Mil-1|Mil1,BCL2-like 13 (apoptosis facilitator),protein-coding,24.41,31.08,14.14,27.43,53.92,48.02,45.56,40.65,46.74,0,50.01,45.65,19.36,48.58,53.19,56.19,72,80.97,34.1,59.9,84.62,94.63,67.42,42.22,76.75,63.85,115.98,109.07,34.29,53.68,83.61,Equal basal,4.50025994761975,5.30724738776325,5.62747708201411,5.67047856232377
Merged-chr18-62985834-4,chr18,62985625,62986062,+,913.4375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028017, intron 5 of 11)",MER102c|DNA|hAT-Charlie,7927,NM_028017,108123,Mm.292687,NM_028017,ENSMUSG00000024581,Napg,2400003O04Rik|SNARE,N-ethylmaleimide sensitive fusion protein attachment protein gamma,protein-coding,13.24,12.49,8.75,10.43,26.66,12.13,14.68,24.58,0,0,0,0,0,0,0,0,40.95,55.88,19,44.27,60.44,0,0,0,0,0,0,0,0,0,0,Equal basal,3.49529473749961,4.02527352632304,4.97019214138244,5.09696773053266
Merged-chr13-20211942-8,chr13,20211793,20212101,+,913.309509,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080288, intron 4 of 21)","intron (NM_080288, intron 4 of 21)",121440,NM_080288,140580,Mm.342392,NM_080288,ENSMUSG00000041112,Elmo1,6330578D22Rik|C230095H21Rik|CED-12,engulfment and cell motility 1,protein-coding,23.58,24.67,10.43,26.2,70.48,47.51,77.95,34.03,86.1,54.13,27.28,41.85,191.17,150.16,66.48,127.35,54.16,115.18,30.74,78.13,59.68,248.41,233.71,182.95,201.02,78.03,324.74,296.66,219.43,207.55,243.87,High basal,4.27915424870682,5.53137112755768,5.67618050776847,5.58261194571674
Merged-chr15-97858587-3,chr15,97858422,97858900,+,912.944458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009504, intron 9 of 9)","intron (NM_009504, intron 9 of 9)",-14159,NM_001204278,56233,Mm.384027,NM_019572,ENSMUSG00000022475,Hdac7,5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062,histone deacetylase 7,protein-coding,12.82,6.09,8.75,14.2,14.14,12.13,11.64,4.41,0,0,0,0,0,0,0,0,33.69,57.02,10.06,21.49,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,3.34301948139278,3.16862682716502,4.84849000459859,4.04940358540343
Merged-chr17-34301339-5,chr17,34301196,34301524,+,912.799988,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4507,NM_010382,14969,Mm.22564,NM_010382,ENSMUSG00000060586,H2-Eb1,Eb|H-2Eb|H2Eb|Ia-4|Ia4,"histocompatibility 2, class II antigen E beta",protein-coding,12,25.63,4.04,5.7,12.12,4.04,9.11,4.41,204.19,230.04,204.58,239.66,48.4,53,17.73,63.68,54.16,46.76,5.59,14.97,12.84,891.1,516.85,721.25,818.7,844.18,208.76,375.19,222.85,193.23,34.84,Equal basal,3.26948772436199,2.71861754031815,5.0419015735589,3.34946131327011
Merged-chr2-163951918-4,chr2,163951726,163952072,+,912.708313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-33216,NM_183023,241770,Mm.330760,NM_183023,ENSMUSG00000035226,Rims4,6530406L02|Rim4,regulating synaptic membrane exocytosis 4,protein-coding,12,17.3,19.86,20.94,20.4,18.7,22.78,12.29,0,0,0,0,0,0,0,0,57.46,76.41,15.09,42.97,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,4.07345551702958,3.97020475550663,5.42738952661384,4.58019483102271
Merged-chr17-23979719-8,chr17,23979547,23979878,+,911.787476,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4482,NM_013921,30943,Mm.142568,NM_013921,ENSMUSG00000024124,Prss30,2010015P21Rik|Disp|Disp1|Tmprss8,"protease, serine 30",protein-coding,16.96,21.78,17.16,28.57,51.29,58.12,76.44,37.81,39.36,76.68,100.02,30.43,101.63,75.08,88.64,97.39,63.41,67.29,45.27,102.22,93.68,216.86,193.26,119.62,259.5,42.56,239.69,270.49,126.86,261.22,264.77,High basal,4.328851942002,5.51597020324313,5.40733234010819,6.10522064424856
Merged-chr3-39269566-4,chr3,39269417,39269714,+,911.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER6C|LTR|ERVK,382625,NM_183221,329628,Mm.316210,NM_183221,ENSMUSG00000046743,Fat4,6030410K14Rik|9430004M15,FAT atypical cadherin 4,protein-coding,2.07,0,0,0.61,90.27,74.3,97.19,46.63,0,0,0,22.82,91.95,123.66,119.67,33.71,4.62,7.98,70.98,102.87,87.64,0,8.99,7.04,10.96,0,65.72,91.62,96,85.88,27.87,High basal,0.474893230711332,5.96432601864704,2.2814865150401,6.29019851137967
Merged-chr10-7924451-4,chr10,7924237,7924603,+,911.56665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001359534, intron 2 of 6)","intron (NM_001359534, intron 2 of 6)",28645,NM_001359534,68652,Mm.193041,NM_138667,ENSMUSG00000015755,Tab2,1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733,TGF-beta activated kinase 1/MAP3K7 binding protein 2,protein-coding,16.96,14.74,8.08,14.28,18.17,23.25,17.21,9.77,0,0,0,0,0,0,0,0,58.79,85.53,7.83,45.57,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.7127932399368,3.85315926150909,5.52299678601082,4.45045858166181
Merged-chr4-95341122-4,chr4,95340924,95341314,+,911.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-216388,NM_001113412,75578,Mm.276098,NM_029347,ENSMUSG00000028573,Fggy,2310009E04Rik,FGGY carbohydrate kinase domain containing,protein-coding,1.65,3.84,7.74,7.97,45.24,40.43,33.92,32.77,0,0,0,0,0,0,0,0,25.76,36.49,22.92,51.43,55.15,0,0,0,0,0,0,0,0,0,0,High basal,2.40752438304671,5.00942101579113,4.35404482427387,5.21116974564528
Merged-chr14-76755821-10,chr14,76755503,76756287,+,910.833313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4236,NR_153763,73883,Mm.489041,NR_153763,NA,4930431P22Rik,-,RIKEN cDNA 4930431P22 gene,ncRNA,4.14,17.94,7.07,4.56,172.06,175.89,182.23,57.97,41.82,117.28,77.29,45.65,404.11,503.47,806.65,584.33,28.4,68.43,108.43,273.45,245.54,496.81,804.49,351.83,566.51,751.96,2134,1950.12,1079.98,1824.99,2313.25,High basal,2.92244839873899,6.8065902726605,4.8585096003869,7.44897261486177
Merged-chr8-39620592-8,chr8,39620332,39620846,+,910.59375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001113326, intron 4 of 9)",RMER6A|LTR|ERVK,22089,NM_031195,20288,Mm.239291,NM_031195,ENSMUSG00000025044,Msr1,MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr,macrophage scavenger receptor 1,protein-coding,19.44,49.98,20.19,24.71,40.79,60.65,50.62,17.96,105.78,103.75,122.75,57.06,96.79,150.16,319.12,82.41,93.13,141.41,20.68,66.41,73.28,390.35,449.44,281.46,398.39,283.76,548.96,532.25,281.14,454.46,529.54,Equal basal,4.6774480432766,5.04568913865152,6.20556465056628,5.41718252509847
Merged-chr12-34701726-6,chr12,34701495,34702049,+,910.274048,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001271386, intron 3 of 27)","intron (NM_001271386, intron 3 of 27)",-172883,NM_024124,79221,Mm.310551,NM_024124,ENSMUSG00000004698,Hdac9,AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744,histone deacetylase 9,protein-coding,16.96,16.34,11.11,15.86,22.62,11.12,14.17,14.81,34.44,27.06,22.73,19.02,55.66,0,0,0,45.57,70.71,6.71,48.18,34.75,197.15,134.83,158.32,179.09,120.6,162.37,292.3,109.71,200.39,167.22,Equal basal,3.87029645903776,3.75902725257143,5.20997505837626,4.40904736200521
Merged-chr17-87183790-3,chr17,87183627,87183938,+,909.666687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,11160,NR_046016,399626,Mm.396062,NR_046016,NA,C330024C12Rik,-,RIKEN cDNA C330024C12 gene,ncRNA,0,1.92,2.69,0.18,3.03,1.01,0.51,0.63,12.3,4.51,27.28,34.24,12.1,8.83,35.46,18.73,44.91,42.2,1.68,0.65,0,745.22,471.91,411.64,617.68,716.49,131.44,47.99,34.29,100.2,83.61,Equal basal,0.888495292926874,0.824518359919066,4.83937551546569,0.768614605493405
Merged-chr6-136465212-8,chr6,136465044,136465345,+,909.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B1F|SINE|Alu,-49625,NM_001201390,100502936,Mm.21182,NM_001201390,ENSMUSG00000045291,E330021D16Rik,C85549,RIKEN cDNA E330021D16 gene,protein-coding,17.79,24.99,20.53,21.29,40.79,38.92,43.03,34.34,63.96,94.72,9.09,98.91,77.43,92.74,53.19,93.64,48.88,79.83,28.51,50.78,68.75,386.41,341.57,225.17,303.36,319.23,467.78,253.04,329.14,379.31,501.67,Equal basal,4.35190910616779,5.05224042985345,5.3444993124144196,5.41081858939094
Merged-chr2-143956942-2,chr2,143956827,143957065,+,909.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_024281, intron 11 of 23)","intron (NM_024281, intron 11 of 23)",41615,NM_019771,56431,Mm.28919,NM_019771,ENSMUSG00000015932,Dstn,2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p,destrin,protein-coding,1.65,1.6,2.36,2.72,6.06,8.09,11.14,7.88,0,0,0,0,0,0,0,0,17.17,34.21,2.24,13.02,26.44,0,0,0,0,0,0,0,0,0,0,Equal basal,1.45661601704541,2.93872040961301,4.0353949723065,3.24529940670255
Merged-chr10-13941633-4,chr10,13941470,13941778,+,909.395813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-24451,NM_001358783,15273,Mm.42157,NM_010437,ENSMUSG00000015501,Hivep2,Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2,human immunodeficiency virus type I enhancer binding protein 2,protein-coding,12.41,19.22,9.76,12.18,14.94,22.24,13.67,12.6,0,0,0,0,0,0,0,0,50.2,67.29,8.94,30.6,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.70267602682427,3.78006969161614,5.2428516661194,4.40739928662548
Merged-chr8-123287526-8,chr8,123287312,123287710,+,908.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_016925, intron 26 of 42)","intron (NM_016925, intron 26 of 42)",31065,NM_016925,14087,Mm.6536,NM_016925,ENSMUSG00000032815,Fanca,AW208693|FACA,"Fanconi anemia, complementation group A",protein-coding,10.34,16.98,11.44,12,15.55,18.7,20.75,9.45,159.91,166.89,372.79,83.69,142.77,79.49,57.62,131.1,40.95,62.72,9.5,35.81,18.13,926.59,1128.08,464.41,705.4,1099.56,490.97,536.61,342.85,311.32,543.47,Equal basal,3.64034653008872,3.76742522072151,5.05105900362467,4.12873794193415
Merged-chr3-87515032-3,chr3,87514848,87515229,+,908.200012,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-10540,NM_001083318,27049,Mm.219460,NM_012051,ENSMUSG00000003382,Etv3,AI414410|METS|Pe1,ets variant 3,protein-coding,2.48,5.45,6.73,1.58,3.63,10.11,3.54,8.51,7.38,36.09,45.46,76.08,9.68,8.83,22.16,7.49,20.48,30.79,5.59,5.86,12.09,394.29,247.19,193.51,175.44,170.25,324.74,261.76,68.57,200.39,229.93,Equal basal,2.11165798643489,2.52051778809215,4.08154776073982,2.92953360165652
Merged-chr16-84610926-3,chr16,84610747,84611101,+,907.722229,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-68865,NR_040537,78023,Mm.243853,NR_040537,NA,4930529L06Rik,-,RIKEN cDNA 4930529L06 gene,ncRNA,0,1.28,0,1.05,27.46,16.17,29.36,22.69,4.92,13.53,0,0,4.84,13.25,0,0,22.46,49.04,24.03,49.48,48.35,39.43,89.89,7.04,18.27,42.56,38.66,87.25,6.86,17.89,41.81,High basal,0.518397874388091,4.34796808874439,4.46486742606969,5.15369802207052
Merged-chr9-75549191-4,chr9,75549017,75549358,+,907.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357828, intron 1 of 10)","intron (NM_001357828, intron 1 of 10)",10470,NM_016963,50875,Mm.38445,NM_016963,ENSMUSG00000058587,Tmod3,U-Tmod|UTMOD,tropomodulin 3,protein-coding,2.48,0,1.35,3.59,58.16,60.15,62.77,35.6,31.98,58.64,40.92,11.41,77.43,88.33,75.35,52.44,9.91,9.12,42.48,52.09,44.57,78.86,62.92,21.11,10.96,78.03,197.16,296.66,109.71,121.67,278.7,High basal,1.26836656143679,5.48091504293505,2.81636744946347,5.40754684626368
Merged-chr6-52698177-4,chr6,52697987,52698391,+,906.895813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-15540,NM_025816,52440,Mm.389757,NM_025816,ENSMUSG00000004535,Tax1bp1,1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151,Tax1 (human T cell leukemia virus type I) binding protein 1,protein-coding,12.82,24.35,12.79,11.04,33.12,32.85,30.37,18.9,0,0,0,0,0,0,0,0,47.56,55.88,13.41,36.46,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,3.85471907716337,4.59864700278145,5.07477913873423,4.69597344175498
Merged-chr13-20114587-5,chr13,20114424,20114739,+,906.853333,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080288, intron 1 of 21)","intron (NM_080288, intron 1 of 21)",24074,NM_080288,140580,Mm.342392,NM_080288,ENSMUSG00000041112,Elmo1,6330578D22Rik|C230095H21Rik|CED-12,engulfment and cell motility 1,protein-coding,15.31,11.85,5.05,7.54,15.95,11.62,13.67,10.71,19.68,0,40.92,7.61,33.88,13.25,4.43,26.22,37.65,44.48,5.03,31.9,28.71,268.12,224.72,77.4,116.96,212.82,185.57,218.13,27.43,161.03,209.03,Equal basal,3.2210320580331,3.51133701337986,4.75269219092741,4.00649505647712
Merged-chr7-88285161-3,chr7,88285028,88285284,+,906.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009982, intron 2 of 6)","intron (NM_009982, intron 2 of 6)",7071,NM_001311790,13032,Mm.89295,NM_009982,ENSMUSG00000030560,Ctsc,AI047818|CatC|DPP1|DPPI,cathepsin C,protein-coding,0.41,5.77,2.69,5.08,12.32,6.57,13.67,6.62,0,0,0,0,0,0,0,0,28.4,30.79,5.59,20.18,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,1.76205163101537,3.06252619398622,4.30474323573791,3.84194770162969
Merged-chr3-27226957-4,chr3,27226804,27227122,+,906.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178772, intron 3 of 4)","intron (NM_178772, intron 3 of 4)",43959,NM_178772,320024,Mm.24576,NM_178772,ENSMUSG00000027698,Nceh1,Aadacl1|B230106I24Rik|CPO-BP|Nceh,neutral cholesterol ester hydrolase 1,protein-coding,10.76,6.41,5.38,10.95,32.51,13.65,17.72,7.56,0,0,0,0,0,0,0,0,33.03,39.92,14.53,38.41,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.08547853899428,3.78502745306095,4.58687900504409,4.67852633836631
Merged-chr7-130819016-4,chr7,130818823,130819244,+,906.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_001081038, exon 12 of 16)","exon (NM_001081038, exon 12 of 16)",44964,NM_001081038,330660,Mm.271550,NM_001081038,ENSMUSG00000040298,Btbd16,E330040A16Rik,BTB (POZ) domain containing 16,protein-coding,17.38,20.82,14.14,13.58,22.21,3.54,26.32,17.33,0,0,0,0,0,0,0,0,65.39,76.41,13.41,35.81,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,4.00891378659323,3.62980382235624,5.51854020543735,4.41393648213461
Merged-chr13-45031459-4,chr13,45031291,45031618,+,905.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-29358,NM_025772,94245,Mm.352311,NM_025772,ENSMUSG00000057531,Dtnbp1,5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy,dystrobrevin binding protein 1,protein-coding,19.86,17.3,18.17,16.3,19.39,11.12,13.67,12.29,0,0,27.28,0,0,0,26.59,0,42.93,79.83,8.94,29.3,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,4.14574622718456,3.61813637669979,5.2536970841751,4.22864187507642
Merged-chr3-87363108-2,chr3,87362971,87363249,+,905.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009690, intron 2 of 5)",Lx8|LINE|L1,5229,NM_009690,11801,Mm.6676,NM_009690,ENSMUSG00000015854,Cd5l,1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM,CD5 antigen-like,protein-coding,2.9,6.09,2.36,2.1,3.63,18.7,6.07,6.62,0,0,0,0,0,0,0,0,17.83,37.63,3.91,24.09,16.62,0,0,0,0,0,0,0,0,0,0,Equal basal,1.87062405220541,2.81695057893946,4.12609566365216,3.52735925051941
Merged-chr11-64496859-8,chr11,64496673,64497029,+,905.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_178870, intron 1 of 1)","intron (NM_178870, intron 1 of 1)",-60177,NR_028445,654805,Mm.436132,NR_028445,NA,F930015N05Rik,-,RIKEN cDNA F930015N05 gene,ncRNA,9.1,7.05,11.11,10.87,28.68,27.8,30.88,25.84,93.48,108.26,27.28,60.87,200.85,216.4,270.36,149.83,38.31,27.37,14.53,22.79,15.11,591.44,696.63,242.76,584.79,595.89,440.72,527.89,161.14,515.29,487.73,High basal,3.28220680148771,4.59807625998783,4.43189139379918,4.0328880456906004
Merged-chr11-50369623-4,chr11,50369427,50369821,+,905.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8095,NM_021510,59013,Mm.21740,NM_021510,ENSMUSG00000007850,Hnrnph1,AI642080|E430005G16Rik|Hnrnph|Hnrph1,heterogeneous nuclear ribonucleoprotein H1,protein-coding,15.31,21.46,11.44,23.22,16.16,18.7,22.78,12.29,0,0,0,0,0,0,0,0,46.9,79.83,14.53,20.83,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,4.08002147755867,3.89514243433641,5.31548361124557,4.1086569046605
Merged-chr2-50854059-4,chr2,50853870,50854242,+,905.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-55628,NR_033595,227885,Mm.301654,NR_033595,ENSMUSG00000083270,Gm13498,-,"heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene",pseudo,20.68,10.57,19.52,23.57,17.17,27.8,20.25,9.77,0,0,0,0,0,0,0,0,59.45,84.39,16.21,47.53,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,4.13585316295504,3.93951695333896,5.52139061484736,4.88992745709412
Merged-chr13-20120876-7,chr13,20120669,20121050,+,904.695251,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080288, intron 1 of 21)","intron (NM_080288, intron 1 of 21)",30352,NM_080288,140580,Mm.342392,NM_080288,ENSMUSG00000041112,Elmo1,6330578D22Rik|C230095H21Rik|CED-12,engulfment and cell motility 1,protein-coding,13.24,24.35,20.87,22.26,31.71,35.38,22.78,27.1,24.6,31.57,200.03,91.3,43.56,48.58,57.62,44.95,54.82,85.53,12.3,34.51,44.57,299.66,265.17,211.1,237.57,205.72,243.55,274.85,205.71,243.33,501.67,Equal basal,4.27957550001599,4.63141373069406,5.47384626513163,4.63879949476105
Merged-chr19-16110837-6,chr19,16110643,16111030,+,904.222229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-21995,NM_008139,14682,Mm.439701,NM_008139,ENSMUSG00000024639,Gnaq,1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI,"guanine nucleotide binding protein, alpha q polypeptide",protein-coding,9.1,18.58,6.73,7.36,32.11,42.96,16.2,17.01,54.12,31.57,27.28,22.82,29.04,26.5,84.21,11.24,31.7,51.32,21.24,65.11,40.8,299.66,449.44,109.07,266.81,255.38,293.81,414.46,164.57,307.74,118.45,High basal,3.32066319942405,4.43210143382543,4.73297790382366,5.14591815335146
Merged-chr1-191447598-9,chr1,191447346,191447804,+,904.053101,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_151615, intron 2 of 5)","intron (NR_151615, intron 2 of 5)",17473,NR_151615,102634668,NA,NR_151615,NA,Gm32200,-,"predicted gene, 32200",ncRNA,5.79,27.55,3.03,13.58,37.76,38.41,31.89,28.67,83.64,45.11,40.92,102.71,84.69,70.66,106.37,48.69,36.99,84.39,20.68,51.43,58.93,540.18,274.16,274.43,358.18,475.29,336.34,270.49,315.42,329.21,341.41,High basal,3.24369942320053,4.8542837667321,5.18902168184152,5.19446286841275
Merged-chr16-91694900-4,chr16,91694744,91695040,+,903.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026994, intron 8 of 11)","intron (NM_026994, intron 8 of 11)",5994,NR_040389,100038392,Mm.440384,NR_040389,ENSMUSG00000085169,Gm10785,-,predicted gene 10785,ncRNA,8.69,12.49,12.79,6.05,19.99,27.29,21.77,6.93,0,0,0,0,0,0,0,0,36.33,47.9,17.33,28.65,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.29240323670171,3.90741264635709,4.77930714531395,4.69398593866192
Merged-chr11-62007587-4,chr11,62007271,62007918,+,903,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001310526, intron 1 of 7)","intron (NM_001310526, intron 1 of 7)",50831,NM_001310526,432572,Mm.438022,NM_001029936,ENSMUSG00000042331,Specc1,2810012G08Rik|B230396K10Rik|Cytsb,sperm antigen with calponin homology and coiled-coil domains 1,protein-coding,21.1,13.78,9.76,19.28,21,25.27,23.28,15.44,0,0,0,0,0,0,0,0,89.83,118.61,12.3,38.41,58.93,0,0,0,0,0,0,0,0,0,0,Equal basal,3.91225642410735,4.18959291275598,6.0547698223734,4.81911741822679
Merged-chr4-10920544-13,chr4,10919830,10921095,+,902.796997,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,45964,NM_026005,67157,Mm.440552,NM_026005,ENSMUSG00000059482,2610301B20Rik,AI428449,RIKEN cDNA 2610301B20 gene,protein-coding,36.41,19.86,21.2,31.46,55.53,75.31,38.47,46.32,137.76,315.75,195.49,159.77,348.46,260.57,469.81,393.3,85.21,111.76,38.57,88.55,123.9,1048.82,943.82,601.63,807.74,567.51,1395.6,1217.19,654.85,1263.18,1010.3,Equal basal,4.67545222541806,5.46568345751552,5.97503923381111,6.09399160887039
Merged-chr2-131479094-4,chr2,131478876,131479242,+,902.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1MC1|LINE|L1,-12803,NM_001177834,228608,Mm.136586,NM_145533,ENSMUSG00000027333,Smox,B130066H01Rik|PAO|PAOh1|SMO,spermine oxidase,protein-coding,12,8.33,12.12,12.27,21.61,23.76,29.36,21.74,0,0,0,0,0,0,0,0,45.57,78.69,11.74,29.95,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,3.49224460501577,4.36607379565046,5.28532145878933,4.58287101720761
Merged-chr4-105207126-6,chr4,105206936,105207321,+,901.472229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_080555, intron 2 of 5)","intron (NM_080555, intron 2 of 5)",49781,NM_080555,67916,Mm.348326,NM_080555,ENSMUSG00000028517,Plpp3,1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b,phospholipid phosphatase 3,protein-coding,14.89,12.81,16.83,19.01,36.96,27.8,38.98,13.23,12.3,18.04,4.55,41.85,31.46,66.25,44.32,56.19,56.14,47.9,18.44,31.25,42.31,126.17,152.81,52.77,127.92,156.07,170.1,209.41,82.28,89.46,0,Equal basal,3.97256712646585,4.53614962359715,5.08393367235562,4.7547134643529
Merged-chr8-75076560-4,chr8,75076261,75076720,+,901.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-17128,NM_010442,15368,Mm.276389,NM_010442,ENSMUSG00000005413,Hmox1,D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32,heme oxygenase 1,protein-coding,21.51,14.74,15.14,14.37,21.81,21.73,38.98,18.59,0,0,0,0,0,0,0,0,47.56,53.6,16.77,47.53,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,4.00698147678102,4.3798779551682,5.04567519880349,4.84359403997977
Merged-chr12-102295421-2,chr12,102295273,102295617,+,901.299988,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001161365, intron 1 of 9)","intron (NM_001161365, intron 1 of 9)",11804,NM_001161365,217835,Mm.24145,NM_177620,ENSMUSG00000044456,Rin3,6430500K07|C86933,Ras and Rab interactor 3,protein-coding,8.27,4.16,4.04,4.56,6.06,5.05,1.52,4.1,54.12,0,0,68.47,12.1,0,4.43,0,60.11,86.67,2.24,11.07,5.29,102.52,206.74,94.99,109.65,191.54,57.99,56.71,13.71,110.93,0,Equal basal,2.49383728514242,1.99708307640482,5.54802213465795,2.49154186974354
Merged-chr6-129418110-4,chr6,129417960,129418299,+,901.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001205363, intron 4 of 6)","intron (NM_001205363, intron 4 of 6)",9267,NM_001205364,232414,Mm.391518,NM_172732,ENSMUSG00000046080,Clec9a,9830005G06Rik|DNGR-1,"C-type lectin domain family 9, member a",protein-coding,9.93,13.78,5.05,7.71,17.77,20.72,9.11,12.92,0,0,0,0,0,0,0,0,45.57,62.72,7.83,37.11,50.62,0,0,0,0,0,0,0,0,0,0,Equal basal,3.14527660204208,3.6885284672258,5.1258306546797,4.52954598320429
Merged-chr5-42977290-4,chr5,42977101,42977501,+,900.895813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ORR1F|LTR|ERVL-MaLR,-256162,NM_175937,231207,Mm.7233,NM_175937,ENSMUSG00000039782,Cpeb2,A630055H10Rik|Cpe-bp2,cytoplasmic polyadenylation element binding protein 2,protein-coding,10.34,19.86,17.5,19.98,23.02,14.15,19.74,17.64,0,0,0,0,0,0,0,0,50.86,85.53,17.89,29.3,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,4.0178139922978104,4.01261775072825,5.42110029491277,4.59908917884277
Merged-chr8-26690119-8,chr8,26689923,26690355,+,900.822937,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,134284,NR_045904,72316,Mm.490534,NR_045904,ENSMUSG00000100335,2310008N11Rik,-,RIKEN cDNA 2310008N11 gene,ncRNA,33.1,34.6,29.28,37.77,51.29,44.98,51.63,43.17,93.48,117.28,0,30.43,87.11,114.83,84.21,97.39,98.42,149.4,31.3,83.99,82.35,220.8,148.31,66.85,175.44,234.1,181.7,261.76,58.28,221.86,118.45,Equal basal,5.01139178032929,5.33302851239506,6.2839359055922,5.77695932673192
Merged-chr1-156921728-7,chr1,156921591,156921896,+,900.780273,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357391, intron 1 of 19)","intron (NM_001357391, intron 1 of 19)",17644,NM_001159966,78255,Mm.28376,NM_023884,ENSMUSG00000026594,Ralgps2,1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161,Ral GEF with PH domain and SH3 binding motif 2,protein-coding,19.44,20.18,11.44,16.3,38.77,19.21,40.5,27.41,66.42,76.68,0,91.3,60.5,57.41,119.67,22.47,40.95,63.86,29.06,44.92,67.99,193.2,197.75,73.88,124.27,120.6,208.76,270.49,130.28,135.98,229.93,Equal basal,4.02175898684785,4.69858477762029,5.06369743813139,5.35736166131375
Merged-chr16-84606262-3,chr16,84606123,84606474,+,900.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-73491,NR_040537,78023,Mm.243853,NR_040537,NA,4930529L06Rik,-,RIKEN cDNA 4930529L06 gene,ncRNA,4.14,11.85,5.38,5.52,64.42,39.93,40.5,30.25,0,0,0,0,0,0,0,0,29.06,20.53,27.39,65.11,58.93,0,0,0,0,0,0,0,0,0,0,High basal,2.75815871241133,5.16260810120664,4.04772022305832,5.4363608284359
Merged-chr8-125127853-2,chr8,125127660,125128039,+,900.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_174854, intron 4 of 12)","intron (NM_174854, intron 4 of 12)",73654,NM_174854,244667,Mm.233504,NM_170596,ENSMUSG00000043051,Disc1,-,disrupted in schizophrenia 1,protein-coding,1.24,0,0,3.33,4.85,2.53,1.01,3.78,0,27.06,0,22.82,26.62,0,0,11.24,27.74,30.79,0.56,2.6,4.53,130.12,53.93,87.96,186.4,14.19,30.93,0,10.29,0,0,Equal basal,0.716364382323728,1.69326723105795,4.28856588431913,1.48005205442958
Merged-chr8-69094322-8,chr8,69094145,69094600,+,900.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_007509, intron 1 of 13)","intron (NM_007509, intron 1 of 13)",-5150,NM_153054,110877,Mm.19301,NM_153054,ENSMUSG00000036330,Slc18a1,4832416I10Rik|Vat1|Vmat1,"solute carrier family 18 (vesicular monoamine), member 1",protein-coding,14.07,14.1,9.09,19.63,18.38,15.67,16.7,15.12,105.78,266.13,100.02,87.5,38.72,282.65,79.78,123.61,41.61,70.71,12.86,31.9,35.51,382.47,251.68,197.02,354.53,191.54,525.77,366.47,202.28,429.41,543.47,Equal basal,3.77921269125662,3.84560587422368,5.14637141254716,4.5172187674885
Merged-chr4-139171890-3,chr4,139171645,139172101,+,899.75,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,8782,NR_033543,100038595,Mm.385206,NR_033543,ENSMUSG00000073739,Gm16287,-,predicted gene 16287,ncRNA,7.03,15.06,2.02,2.37,2.02,2.53,2.02,5.36,93.48,189.45,86.38,121.73,43.56,26.5,57.62,22.47,62.09,67.29,4.47,3.91,4.53,1336.66,1303.36,851.42,979.52,1617.41,38.66,47.99,24,64.41,139.35,Equal basal,2.46562701557379,1.68026530208395,5.39247273747666,2.29041496715045
Merged-chr5-63826129-3,chr5,63826020,63826259,+,899.222229,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_029554, intron 1 of 3)","intron (NM_029554, intron 1 of 3)",13644,NM_029554,76261,Mm.38143,NM_029554,ENSMUSG00000060512,0610040J01Rik,AI662686,RIKEN cDNA 0610040J01 gene,protein-coding,1.65,3.2,2.36,7.45,9.09,4.04,6.07,5.36,14.76,54.13,136.39,45.65,14.52,53,106.37,44.95,19.15,34.21,2.24,13.02,7.55,272.06,152.81,59.81,58.48,425.64,235.82,130.88,58.28,42.94,376.25,Equal basal,1.96413822599699,2.5375379937845,4.10858742646953,2.70142469560863
Merged-chr1-91056611-4,chr1,91056472,91056760,+,899.075012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008515, intron 1 of 22)","intron (NM_008515, intron 1 of 22)",3172,NM_001310732,16978,Mm.45039,NM_008515,ENSMUSG00000026305,Lrrfip1,AU024550|Fliiap1,leucine rich repeat (in FLII) interacting protein 1,protein-coding,4.14,12.49,5.72,9.38,26.45,22.24,14.17,13.86,0,0,0,0,0,0,0,0,42.27,83.25,7.27,26.04,62.71,0,0,0,0,0,0,0,0,0,0,Equal basal,2.94433677358907,4.02690541167621,5.2724817856003,4.43412431699108
Merged-chr4-59199556-4,chr4,59199383,59199756,+,898.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011673, intron 1 of 8)","intron (NM_011673, intron 1 of 8)",10019,NM_011673,22234,Mm.198803,NM_011673,ENSMUSG00000028381,Ugcg,AU043821|C80537|Epcs21|GlcT-1|Ugcgl,UDP-glucose ceramide glucosyltransferase,protein-coding,9.1,15.38,8.08,10.25,17.37,16.17,23.28,8.19,0,0,0,0,0,0,0,0,35.01,51.32,7.83,37.76,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,3.41880865269885,3.76950046922241,4.80160943367476,4.52345961900462
Merged-chr5-140768570-4,chr5,140768390,140768774,+,898.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010302, intron 2 of 3)","intron (NM_010302, intron 2 of 3)",44455,NM_173405,231842,Mm.491298,NM_173405,ENSMUSG00000050022,Amz1,5330426I05|6530401C20Rik,archaelysin family metallopeptidase 1,protein-coding,15.31,5.13,6.73,21.82,12.72,14.66,13.67,8.51,0,0,0,0,0,0,0,0,73.32,82.11,5.03,29.3,39.29,0,0,0,0,0,0,0,0,0,0,Equal basal,3.42964607830127,3.42680428694549,5.65021926917448,4.11184193020587
Merged-chr5-137886152-4,chr5,137885979,137886327,+,898.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-14395,NM_001024932,545812,Mm.332769,NM_001024932,ENSMUSG00000066682,Pilrb2,EG545812,paired immunoglobin-like type 2 receptor beta 2,protein-coding,13.65,13.13,5.72,12.71,21.61,18.7,15.19,10.08,0,0,0,0,0,0,0,0,29.06,57.02,14.53,36.46,35.51,0,0,0,0,0,0,0,0,0,0,Equal basal,3.42455792354987,3.80491243469295,4.7465006002357,4.63501880137851
Merged-chr18-5820481-3,chr18,5820314,5820649,+,897.222229,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,227834,NM_001360981,21417,Mm.3929,NM_011546,ENSMUSG00000024238,Zeb1,3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1,zinc finger E-box binding homeobox 1,protein-coding,8.27,8.33,7.74,5.7,23.63,18.7,19.24,13.23,0,0,0,0,14.52,0,0,0,33.69,35.35,11.18,26.69,35.51,43.37,40.45,0,51.17,42.56,54.12,26.18,0,21.47,76.64,High basal,2.97205890418958,4.0049855352411,4.51705427176715,4.37185256435522
Merged-chr19-37963086-8,chr19,37962871,37963290,+,897.172607,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001302140, intron 19 of 53)",L1MB3|LINE|L1,80497,NM_001099634,226101,Mm.34674,NM_177035,ENSMUSG00000048612,Myof,2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3,myoferlin,protein-coding,9.93,8.33,9.76,11.65,22.62,28.3,30.88,11.03,59.04,103.75,100.02,72.28,188.75,145.74,124.1,153.57,33.03,46.76,16.77,40.37,48.35,248.41,386.51,73.88,157.16,113.5,537.37,449.36,270.85,357.84,334.45,Equal basal,3.33924038451253,4.22874836754918,4.6964473291515,4.89154362357062
Merged-chr6-135295712-5,chr6,135295582,135295859,+,896.786682,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,14664,NM_029595,76400,Mm.293018,NM_029595,ENSMUSG00000047104,Pbp2,1700023A18Rik|AI326308|Pebp-2|Pebp2,phosphatidylethanolamine binding protein 2,protein-coding,39.3,43.25,36.01,43.37,7.47,3.54,5.06,4.1,59.04,45.11,118.2,117.93,14.52,0,26.59,3.75,112.95,141.41,2.79,5.86,13.6,402.18,476.4,256.83,449.55,503.67,123.71,196.32,61.71,103.77,146.32,Low basal,5.26530901465051,2.26042410352828,6.34286281217216,2.6992612789608
Merged-chr17-35749975-7,chr17,35749663,35750199,+,896.480957,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-22519,NR_045459,74601,Mm.410840,NR_045459,ENSMUSG00000092171,4833427F10Rik,-,RIKEN cDNA 4833427F10 gene,ncRNA,2.07,14.74,7.74,10.34,30.29,44.98,30.88,27.1,17.22,157.87,27.28,45.65,108.89,141.32,79.78,172.3,41.61,65,21.8,56.64,58.17,421.89,373.03,165.36,160.82,234.1,347.93,379.55,185.14,207.55,459.86,High basal,2.91160711535347,4.80380167179188,5.08728625248268,5.25816194282262
Merged-chr3-15276021-9,chr3,15275595,15276270,+,896.379639,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,PB1D9|SINE|Alu,56370,NM_001076679,751864,Mm.431296,NM_001076679,ENSMUSG00000078783,Gm9733,-,predicted gene 9733,protein-coding,20.27,34.6,25.91,32.42,78.35,82.89,78.97,34.97,115.62,135.32,209.12,121.73,118.57,216.4,168.42,179.79,79.92,102.64,31.86,64.46,80.08,520.47,449.44,239.24,486.1,432.73,514.17,554.06,233.14,386.47,522.57,High basal,4.73922291154746,5.77786093705726,5.86920433026385,5.64706816443223
Merged-chr4-102495683-4,chr4,102495483,102495840,+,896.229187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001177983, intron 2 of 5)","intron (NM_001177983, intron 2 of 5)",-74399,NM_001177980,18578,Mm.20181,NM_019840,ENSMUSG00000028525,Pde4b,Dpde4|R74983|dunce,"phosphodiesterase 4B, cAMP specific",protein-coding,12,5.45,15.14,10.87,18.17,12.13,19.74,9.45,0,0,0,0,0,0,0,0,35.01,57.02,13.97,26.04,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,3.37120054245007,3.67157132279419,4.87516426114996,4.31340532887849
Merged-chr10-70250934-4,chr10,70250722,70251168,+,896,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_025807, intron 1 of 5)","intron (NM_025807, intron 1 of 5)",5669,NM_025807,66859,Mm.19325,NM_025807,ENSMUSG00000037762,Slc16a9,1200003C15Rik|4930425B13Rik|AI552636,"solute carrier family 16 (monocarboxylic acid transporters), member 9",protein-coding,12,9.61,17.16,20.33,20.6,22.24,37.96,21.11,0,0,0,0,0,0,0,0,68.69,114.04,16.21,38.41,49.86,0,0,0,0,0,0,0,0,0,0,Equal basal,3.81964325151626,4.41159910430604,5.836751764186,4.86722818090138
Merged-chr8-33661340-5,chr8,33661181,33661484,+,894.877747,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_010344, intron 1 of 12)",RLTR21|LTR|ERVK,8094,NM_010344,14782,Mm.283573,NM_010344,ENSMUSG00000031584,Gsr,AI325518|D8Ertd238e|Gr-1|Gr1,glutathione reductase,protein-coding,2.48,2.56,2.02,0.61,17.77,23.76,12.65,10.08,7.38,18.04,50.01,19.02,104.05,35.33,79.78,86.15,11.23,7.98,15.65,19.53,21.15,212.92,134.83,91.48,263.15,390.17,521.9,370.83,126.86,493.82,376.25,High basal,1.3962847621976,3.7528822486543,2.81664277882688,4.14682519154987
Merged-chr6-82740422-6,chr6,82740091,82740663,+,893.924988,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_013820, intron 7 of 17)","intron (NM_013820, intron 7 of 17)",34077,NM_013820,15277,Mm.255848,NM_013820,ENSMUSG00000000628,Hk2,AI642394|HKII,hexokinase 2,protein-coding,9.52,9.93,5.38,7.45,42.61,45.49,17.21,17.01,135.3,58.64,31.82,22.82,104.05,92.74,115.24,97.39,41.61,52.46,15.65,64.46,92.93,256.29,238.2,147.77,222.95,49.66,173.97,283.57,188.57,264.8,250.83,High basal,3.03286761810308,4.57551615820243,4.93725171182696,5.38650467695355
Merged-chr5-64463789-6,chr5,64463636,64463964,+,893.56665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_040681, intron 1 of 2)","intron (NR_040681, intron 1 of 2)",4142,NR_040681,69999,Mm.261413,NR_040681,ENSMUSG00000100911,1700027F09Rik,-,RIKEN cDNA 1700027F09 gene,ncRNA,7.03,10.89,9.42,5.87,52.1,79.86,68.84,29.93,14.76,4.51,0,22.82,38.72,53,53.19,82.41,19.15,35.35,34.1,111.33,159.41,110.4,143.82,35.18,109.65,227.01,278.35,218.13,123.43,150.29,271.74,High basal,3.07567634706413,5.51677030810466,4.13107713274407,6.26450689205366
Merged-chr19-16349486-4,chr19,16349324,16349711,+,893.541626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008139, intron 5 of 6)",L1MB3|LINE|L1,-34513,NR_105832,102465218,NA,NR_105832,ENSMUSG00000098718,Mir496b,Gm28028|mmu-mir-496b,microRNA 496b,ncRNA,14.48,13.78,4.04,13.93,15.55,15.16,28.85,12.29,0,0,0,0,0,0,0,0,51.52,51.32,18.44,32.55,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.40595862434138,3.8989190355338,5.07151777006602,4.62940081021646
Merged-chr18-60381893-4,chr18,60381749,60382064,+,892.708374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_021792, intron 2 of 2)","intron (NM_021792, intron 2 of 2)",5877,NM_001146275,60440,Mm.261140,NM_021792,ENSMUSG00000054072,Iigp1,2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6,interferon inducible GTPase 1,protein-coding,14.89,11.21,11.11,11.65,18.17,13.14,20.75,16.7,0,0,0,0,0,0,0,0,39.63,71.85,11.74,25.39,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.60325916464101,3.89977090052774,5.12359261364122,4.39031259977747
Merged-chr11-48858159-4,chr11,48857997,48858347,+,892.520813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,13248,NM_001355757,15944,Mm.29938,NM_008326,ENSMUSG00000046879,Irgm1,Ifggd3|Ifi1|Iigp3|Iipg3|Irgm,immunity-related GTPase family M member 1,protein-coding,13.24,16.34,8.75,11.65,20.19,17.69,24.8,8.19,0,0,0,0,0,0,0,0,41.61,77.55,11.18,31.25,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.62353509739913,3.85520794508959,5.21142402049491,4.49996234488613
Merged-chr6-145214204-5,chr6,145214018,145214358,+,892.47998,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001163628, intron 1 of 2)",URR1A|DNA|hAT-Charlie,3041,NM_001362057,67636,Mm.486359,NM_133688,ENSMUSG00000040370,Etfrf1,4930469P12Rik|AL022899|Ghiso|Lyrm5,electron transfer flavoprotein regulatory factor 1,protein-coding,14.48,8.01,10.1,14.2,12.92,7.58,6.58,7.25,54.12,31.57,72.74,60.87,31.46,30.91,155.13,33.71,44.91,34.21,8.94,23.44,17.38,228.69,319.1,154.8,427.62,297.94,173.97,296.66,102.86,361.42,327.48,Equal basal,3.51972131875451,2.92182837016929,4.69494276620186,3.88796459715515
Merged-chr16-94574806-4,chr16,94574646,94574969,+,892.4375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001113389, intron 1 of 11)","intron (NM_001113389, intron 1 of 11)",3900,NM_001113389,13548,Mm.310973,NM_007890,ENSMUSG00000022897,Dyrk1a,2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb,dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a,protein-coding,20.68,24.67,16.83,13.32,18.17,37.91,12.65,19.22,0,0,0,0,0,0,0,0,70.01,83.25,11.18,53.39,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,4.18201627068407,4.13752596791402,5.6273385900749,4.84433620032653
Merged-chr5-66079932-4,chr5,66079793,66080087,+,891.200012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_139065, intron 2 of 6)","intron (NM_139065, intron 2 of 6)",18239,NM_139065,245945,Mm.36863,NM_139065,ENSMUSG00000070780,Rbm47,9530077J19Rik,RNA binding motif protein 47,protein-coding,16.55,11.53,8.75,9.03,21.61,14.15,32.4,10.71,0,0,0,0,0,0,0,0,46.24,53.6,19,31.9,46.84,0,0,0,0,0,0,0,0,0,0,Equal basal,3.50497382096576,3.99667940584455,5.02593585165834,4.82545877157426
Merged-chr14-70981241-6,chr14,70981058,70981411,+,891.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,91127,NM_001302094,14586,Mm.32619,NM_008115,ENSMUSG00000022103,Gfra2,-,glial cell line derived neurotrophic factor family receptor alpha 2,protein-coding,47.99,28.83,49.14,54.59,2.22,3.03,7.59,0.63,78.72,234.55,54.55,87.5,41.14,83.91,53.19,86.15,130.12,172.21,3.35,1.95,3.02,863.5,939.32,538.3,899.11,1092.46,425.25,379.55,161.14,221.86,306.58,Low basal,5.39453797163753,1.61530984466405,6.58429346494917,1.80921380345955
Merged-chr14-27341309-9,chr14,27340703,27341802,+,891.063477,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001289687, intron 1 of 9)",MTC|LTR|ERVL-MaLR,5215,NM_001289687,71704,Mm.248606,NM_027871,ENSMUSG00000021895,Arhgef3,1200004I24Rik|9830169H03Rik|C76747|Xpln,Rho guanine nucleotide exchange factor (GEF) 3,protein-coding,32.27,54.14,22.55,24.27,68.26,80.87,47.08,21.11,7.38,0,50.01,0,16.94,0,0,0,100.4,172.21,26.27,128.91,116.35,98.57,89.89,130.18,69.44,0,231.96,130.88,96,100.2,243.87,Equal basal,4.91119901243251,5.35619596406671,6.39947164436198,6.06197607053188
Merged-chr2-165407960-6,chr2,165407781,165408158,+,891,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_054055, intron 12 of 12)","intron (NM_054055, intron 12 of 12)",-7575,NM_029021,74614,Mm.72179,NM_029021,ENSMUSG00000027670,Ocstamp,4833422F24Rik|OC-STAMP,osteoclast stimulatory transmembrane protein,protein-coding,22.34,30.43,18.17,23.66,42.61,33.36,28.85,13.23,24.6,54.13,22.73,0,24.2,53,22.16,0,81.24,101.5,11.74,81.38,65.73,145.89,125.84,63.33,91.37,70.94,127.58,109.07,61.71,107.35,125.42,Equal basal,4.50377209784218,4.55026838048652,5.87291034964392,5.20181852423036
Merged-chr7-145289179-4,chr7,145289025,145289303,+,890.75,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-5153,NR_132642,233979,Mm.102235,NM_146206,ENSMUSG00000048677,Tpcn2,D830047E22Rik|Gm35086,two pore segment channel 2,protein-coding,6.21,3.84,1.35,5.7,8.68,2.53,7.09,7.25,44.28,49.62,31.82,53.26,21.78,26.5,31.03,74.91,18.49,41.06,4.47,11.72,17.38,272.06,89.89,165.36,263.15,42.56,162.37,100.34,120,246.91,0,Equal basal,2.16631970476839,2.49233637372381,4.2104928836267,3.28112891114161
Merged-chr6-146756939-5,chr6,146756735,146757150,+,890.359985,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001346666, intron 1 of 11)","intron (NM_001346666, intron 1 of 11)",32012,NM_172734,232533,Mm.322121,NM_172734,ENSMUSG00000001630,Stk38l,4930473A22Rik|Ndr2|Ndr54,serine/threonine kinase 38 like,protein-coding,1.65,0.64,0.67,4.47,6.26,8.09,7.09,8.19,34.44,54.13,72.74,0,70.18,79.49,62.05,44.95,27.74,31.93,5.03,15.63,23.42,350.92,337.08,309.61,460.52,397.26,305.41,196.32,195.43,429.41,181.16,Equal basal,1.2711854262456,2.82480797027225,4.31337637417039,3.59013779023912
Merged-chrX-166718314-4,chrX,166718141,166718471,+,889.875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,56281,NR_046015,382255,Mm.336320,NR_046015,ENSMUSG00000086860,Gm1720,-,predicted gene 1720,ncRNA,3.31,13.46,9.42,7.01,38.77,26.79,50.62,16.07,0,0,0,0,0,0,0,0,33.03,58.16,29.62,65.11,55.15,0,0,0,0,0,0,0,0,0,0,High basal,3.00338866070845,4.69668144244008,4.84862556984307,5.44209157151369
Merged-chr3-98061258-4,chr3,98061085,98061462,+,889.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010928, intron 2 of 33)",T-rich|Low_complexity|Low_complexity,47735,NM_010928,18129,Mm.485843,NM_010928,ENSMUSG00000027878,Notch2,AI853703|N2,notch 2,protein-coding,7.03,13.13,3.7,11.83,22.42,14.66,19.74,10.71,0,0,0,0,0,0,0,0,25.76,54.74,7.83,22.79,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,3.03953571491006,3.83181671023862,4.63514252048212,4.01798528078616
Merged-chr5-62521262-3,chr5,62521112,62521400,+,889.555542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,244921,NM_178407,212285,Mm.244403,NM_178407,ENSMUSG00000037999,Arap2,Centd1|Gm148|mKIAA0580,"ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2",protein-coding,1.65,1.28,2.02,4.91,19.59,24.26,10.63,15.75,0,0,0,0,0,0,0,0,15.85,30.79,13.97,42.97,46.84,0,0,0,0,0,0,0,0,0,0,High basal,1.63063371669902,3.88872558770877,3.91010930761201,4.8221438106459
Merged-chr12-25190587-4,chr12,25190410,25190777,+,889.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,61419,NR_045844,432641,Mm.112955,NR_045844,NA,Gm17746,-,"predicted gene, 17746",ncRNA,3.31,10.25,13.8,17.79,7.07,6.57,18.73,14.49,0,0,0,0,0,0,0,0,78.6,111.76,5.03,21.49,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.33730451228463,3.26417588492946,5.9178011125938,3.86047716903031
Merged-chr4-105291597-7,chr4,105291325,105291899,+,889.385681,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,134265,NM_080555,67916,Mm.348326,NM_080555,ENSMUSG00000028517,Plpp3,1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b,phospholipid phosphatase 3,protein-coding,30.2,47.41,37.69,47.75,55.74,50.54,77.45,38.75,17.22,13.53,22.73,30.43,26.62,44.16,13.3,22.47,124.84,127.73,22.36,97.66,95.95,161.66,166.29,140.73,244.88,163.16,235.82,292.3,198.85,268.38,146.32,Equal basal,5.26048476223141,5.50950168583612,6.34177637211506,5.76327881122088
Merged-chr4-16160638-3,chr4,16160452,16160816,+,889.166687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_138102, intron 1 of 11)","intron (NR_138102, intron 1 of 11)",3009,NM_138952,192656,Mm.112765,NM_138952,ENSMUSG00000041135,Ripk2,2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2,receptor (TNFRSF)-interacting serine-threonine kinase 2,protein-coding,10.34,8.01,2.36,2.37,20.19,28.81,14.17,12.29,0,0,0,0,0,0,0,0,42.93,61.58,7.27,31.25,27.95,0,0,0,0,0,0,0,0,0,0,High basal,2.38290953606757,3.97097857818881,5.07119349587524,4.14264823436539
Merged-chr1-39784752-5,chr1,39784294,39785110,+,889.033325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,20630,NM_001177348,100042065,Mm.209678,NM_001177348,ENSMUSG00000091937,Gm3646,-,predicted gene 3646,protein-coding,32.27,35.24,43.42,43.99,31.3,43.97,26.83,22.06,0,0,0,0,0,0,0,0,103.7,149.4,17.33,65.11,83.1,0,0,0,0,0,0,0,0,0,0,Equal basal,5.2030115029615,4.68421922414948,6.32115295374559,5.38527909627972
Merged-chrX-163306315-2,chrX,163306178,163306435,+,888,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_038088, intron 1 of 5)","intron (NR_038088, intron 1 of 5)",46258,NR_038088,100568459,NA,NR_038088,ENSMUSG00000115783,Bc1,Gm24367,brain cytoplasmic RNA 1,ncRNA,5.38,4.16,1.01,3.5,8.68,13.14,9.62,6.3,0,0,0,0,0,0,0,0,23.78,28.51,6.71,22.14,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,1.85892706493349,3.07682553448308,4.1307132173616,3.93742640122567
Merged-chr9-111039185-4,chr9,111039022,111039352,+,887.708374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008522, intron 15 of 16)","intron (NM_008522, intron 15 of 16)",18057,NM_001302377,54199,Mm.7336,NM_017466,ENSMUSG00000043953,Ccrl2,1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR,chemokine (C-C motif) receptor-like 2,protein-coding,8.69,9.61,8.75,12.27,19.39,18.2,28.35,10.71,0,0,0,0,0,0,0,0,27.74,42.2,19,30.6,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32169698705956,4.00144822611304,4.50500806635731,4.59171775914247
Merged-chr4-119846087-2,chr4,119845883,119846271,+,887,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010657, intron 1 of 8)",MIRb|SINE|MIR,31399,NM_010657,16656,Mm.302758,NM_010657,ENSMUSG00000028634,Hivep3,2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3,human immunodeficiency virus type I enhancer binding protein 3,protein-coding,14.07,7.37,9.42,7.27,15.55,5.05,9.62,6.93,0,0,0,0,0,0,0,0,44.91,65,5.03,18.88,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.24776962676467,2.99965494965812,5.14067115837311,3.64445241084775
Merged-chr1-171397818-6,chr1,171397508,171398054,+,886.932556,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001005508, intron 2 of 11)","intron (NM_001005508, intron 2 of 11)",8821,NM_001005508,226652,Mm.251048,NM_001005508,ENSMUSG00000048865,Arhgap30,6030405P05Rik|Gm102|mFLJ00267,Rho GTPase activating protein 30,protein-coding,18.2,8.65,9.42,18.14,15.35,14.15,8.1,8.19,14.76,18.04,0,22.82,24.2,0,0,0,50.86,70.71,4.47,24.74,29.46,295.72,278.65,91.48,222.95,42.56,65.72,170.14,106.28,121.67,118.45,Equal basal,3.6905211902195,3.34076644603833,5.28689750679551,3.85252471835733
Merged-chr9-107313145-13,chr9,107312797,107313627,+,886.835876,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,16553,NM_001317354,12700,Mm.4592,NM_009895,ENSMUSG00000032578,Cish,CIS-1|CIS1|Cis|F17|F23|SOCS,cytokine inducible SH2-containing protein,protein-coding,21.1,28.83,19.18,16.65,66.04,67.22,81.5,50.41,120.54,144.34,118.2,152.17,229.88,384.22,217.18,434.5,45.57,84.39,30.74,103.52,111.06,437.67,382.02,288.5,266.81,262.48,444.58,318.48,202.28,357.84,592.25,High basal,4.35439630658655,5.78033687661086,5.33469592197883,6.00930899518579
Merged-chr2-71039888-4,chr2,71039735,71040027,+,886.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_145524, intron 1 of 9)","intron (NM_145524, intron 1 of 9)",15725,NM_145524,228019,Mm.490343,NM_145524,ENSMUSG00000041975,Mettl8,BC004636|Tip,methyltransferase like 8,protein-coding,9.52,5.77,12.12,16.65,18.38,10.11,23.79,16.38,0,0,0,0,0,0,0,0,50.86,51.32,10.06,30.6,40.8,0,0,0,0,0,0,0,0,0,0,Equal basal,3.40296496784451,3.8613364179727,5.06245456619056,4.45150175771538
Merged-chr5-67297619-7,chr5,67297455,67297767,+,886.238098,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9344,NM_178651,109108,Mm.234455,NM_178651,ENSMUSG00000029221,Slc30a9,2310024J23Rik|AL024256|GAC63|HUEL|znT-9,"solute carrier family 30 (zinc transporter), member 9",protein-coding,12.41,7.05,5.72,15.16,9.69,12.64,11.64,13.86,44.28,94.72,50.01,26.63,89.53,128.07,137.4,26.22,48.22,59.3,9.5,31.25,24.93,622.98,773.03,281.46,573.82,283.76,324.74,523.52,185.14,504.56,376.25,Equal basal,3.27090465065285,3.41420816945265,5.12601591853676,4.2091398578143
Merged-chr8-34762902-4,chr8,34762713,34763095,+,886.025024,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-44706,NM_176933,319520,Mm.170276,NM_176933,ENSMUSG00000031530,Dusp4,2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2,dual specificity phosphatase 4,protein-coding,1.65,5.45,3.7,5.26,7.47,2.53,16.2,7.56,27.06,40.6,31.82,3.8,33.88,70.66,26.59,14.98,29.72,38.77,6.15,16.28,9.07,441.61,395.5,383.49,361.84,411.45,340.2,388.28,202.28,275.54,236.9,Equal basal,2.12616859169767,2.73403236185257,4.49409298770081,3.27956126278486
Merged-chr6-17558166-3,chr6,17558022,17558316,+,885.766663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_008591, intron 17 of 21)","intron (NM_008591, intron 17 of 21)",-78841,NM_007604,12343,Mm.392504,NM_007604,ENSMUSG00000015733,Capza2,1110053K06Rik|AW208808|Cappa2,"capping protein (actin filament) muscle Z-line, alpha 2",protein-coding,1.65,7.69,4.71,8.41,0,0,0,0.32,0,0,4.55,0,0,0,0,0,30.38,30.79,0,0.65,0,268.12,269.66,154.8,233.91,255.38,11.6,21.81,34.29,57.25,0,Low basal,2.49345080597525,0,4.35120611453937,0.191744770421818
Merged-chr3-100932431-4,chr3,100932206,100932568,+,885.479187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_001165953, exon 7 of 7)","3' UTR (NM_001165953, exon 7 of 7)",9894,NM_001165953,229644,Mm.189351,NM_194343,ENSMUSG00000033233,Trim45,4921530N01Rik,tripartite motif-containing 45,protein-coding,17.79,8.01,10.1,16.04,20.19,18.2,16.7,12.92,0,0,0,0,0,0,0,0,50.86,42.2,9.5,29.3,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.63010555891405,3.88083403018189,4.92651670382362,4.33162838075262
Merged-chr13-95639281-16,chr13,95638658,95639978,+,885.19165,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_027711, intron 30 of 35)",PB1D10|SINE|Alu,-20852,NM_010169,14062,Mm.24816,NM_010169,ENSMUSG00000048376,F2r,AI482343|Cf2r|Par1|ThrR,coagulation factor II (thrombin) receptor,protein-coding,28.13,44.21,23.56,24.27,81.18,81.88,78.46,51.04,228.79,243.58,313.69,194.01,551.72,450.47,983.94,352.09,75.96,132.29,29.06,65.11,123.9,1052.77,993.25,548.85,836.97,808.71,1016.74,1016.51,575.99,926.81,968.5,High basal,4.81456035434623,5.91813515671933,6.01343108472814,5.81553267212329
Merged-chr5-74903816-3,chr5,74903405,74904107,+,884.333313,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-45438,NR_045866,619945,Mm.359372,NM_001037908,ENSMUSG00000072874,Gm6116,EG619945,predicted gene 6116,ncRNA,4.55,6.09,5.38,3.15,5.25,0,0,1.26,61.5,9.02,95.47,68.47,60.5,0,8.86,0,45.57,36.49,1.68,0,2.27,484.98,373.03,172.4,365.49,425.64,30.93,82.89,82.28,85.88,0,Equal basal,2.38354651062436,0.894681141688062,4.74946089703825,1.03051867855527
Merged-chr5-20865492-3,chr5,20865279,20865637,+,884.111084,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172992, intron 1 of 17)","intron (NM_172992, intron 1 of 17)",16666,NM_172992,68770,Mm.86410,NM_172992,ENSMUSG00000039987,Phtf2,1110054G21Rik|9530062N20Rik|AI447096|C77923,putative homeodomain transcription factor 2,protein-coding,11.58,10.89,4.38,10.43,16.56,7.08,11.14,6.62,0,0,0,0,0,0,0,0,42.27,45.62,7.83,18.23,37.02,0,0,0,0,0,0,0,0,0,0,Equal basal,3.17526239086392,3.15890259960301,4.85101047924811,4.05903741654939
Merged-chr4-3721695-5,chr4,3721480,3721886,+,883.466675,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001111096, intron 1 of 12)","intron (NM_001111096, intron 1 of 12)",6719,NR_028126,70720,Mm.445696,NR_028126,NA,6330407A03Rik,-,RIKEN cDNA 6330407A03 gene,ncRNA,32.27,21.78,9.42,19.01,5.65,8.09,2.02,10.08,49.2,81.19,27.28,68.47,26.62,0,53.19,44.95,63.41,88.95,2.79,16.93,18.13,619.04,512.36,358.86,383.77,553.33,228.09,130.88,174.85,146.71,118.45,Low basal,4.22229007923962,2.54943691283132,5.60412256925582,3.27413691343298
Merged-chr5-43949136-5,chr5,43948850,43949329,+,883.246643,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,32710,NM_008009,14181,Mm.46053,NM_008009,ENSMUSG00000048373,Fgfbp1,FGF-BP|FGF-BP1|FGFBP-1,fibroblast growth factor binding protein 1,protein-coding,9.52,8.97,3.7,14.9,15.75,9.6,17.21,25.52,7.38,27.06,68.19,22.82,14.52,17.67,26.59,0,44.91,69.57,8.38,44.92,36.26,138,116.85,84.44,135.23,42.56,181.7,161.42,85.71,178.92,195.09,Equal basal,3.10346829061387,3.82672569862273,5.18832012493782,4.49386145755309
Merged-chr15-78351713-6,chr15,78351449,78351999,+,882.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,TTS (NM_007780),TTS (NM_007780),3125,NR_106137,102465776,NA,NR_106137,ENSMUSG00000098996,Mir7676-1,Gm27600|mmu-mir-7676-1,microRNA 7676-1,ncRNA,39.71,24.03,12.79,19.19,35.74,44.48,20.25,32.45,41.82,121.79,72.74,64.67,33.88,44.16,31.03,52.44,69.35,93.52,29.62,72.27,72.53,86.74,130.34,56.29,127.92,28.38,96.65,109.07,89.14,42.94,229.93,Equal basal,4.4283141063543,4.78091992644941,5.70282149642947,5.62008592623986
Merged-chr4-103341392-3,chr4,103341241,103341528,+,882,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_025909, intron 7 of 8)","intron (NM_025909, intron 7 of 8)",27538,NM_025909,67013,Mm.30021,NM_025909,ENSMUSG00000035069,Oma1,2010001O09Rik|MPRP-1|ZMPOMA1,OMA1 zinc metallopeptidase,protein-coding,6.21,11.53,6.39,14.55,2.63,1.01,2.02,3.78,39.36,94.72,0,38.04,12.1,0,4.43,3.75,37.65,42.2,1.68,2.6,4.53,157.72,179.77,73.88,105.99,127.69,19.33,21.81,24,46.52,0,Low basal,3.21005216041034,1.50043803798379,4.71623171458966,1.78155331424331
Merged-chr10-59943724-3,chr10,59943450,59944036,+,881.333313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MIR|SINE|MIR,8027,NM_029083,74747,Mm.21697,NM_029083,ENSMUSG00000020108,Ddit4,5830413E08Rik|AA415483|REDD1|Rtp801|dig2,DNA-damage-inducible transcript 4,protein-coding,10.34,17.62,5.38,7.27,15.15,33.36,22.27,11.34,0,0,0,0,0,0,0,0,33.69,69.57,13.97,33.86,54.4,0,0,0,0,0,0,0,0,0,0,Equal basal,3.24756961821768,4.05940191425075,4.98794192422857,4.7812674018553
Merged-chr8-70426710-8,chr8,70426553,70426951,+,880.93335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001004062, intron 1 of 13)","intron (NM_001004062, intron 1 of 13)",12821,NM_001004062,382056,Mm.227767,NM_001004062,ENSMUSG00000003575,Crtc1,AI413414|Mect1|R74955|TORC1|mKIAA0616,CREB regulated transcription coactivator 1,protein-coding,4.55,11.85,13.46,13.67,8.48,10.61,24.3,23.32,68.88,90.21,95.47,136.95,67.76,61.83,70.91,131.1,35.67,39.92,17.89,33.2,30.22,339.09,292.13,186.47,296.05,361.79,313.14,266.12,144,271.96,320.51,Equal basal,3.3501621046786,3.74898203793417,4.6402457678143,4.61298339171737
Merged-chr2-118959875-7,chr2,118959724,118960189,+,880.730164,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,33459,NM_028117,72136,Mm.486238,NM_028117,ENSMUSG00000074916,Chst14,2600016L03Rik|D4ST-1|D4st1,carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14,protein-coding,9.93,5.45,3.37,7.62,127.63,135.96,100.23,87.91,34.44,58.64,31.82,72.28,188.75,194.32,159.56,179.79,35.67,21.67,58.13,150.4,150.34,114.35,116.85,73.88,87.72,127.69,556.7,562.79,339.42,619.06,654.96,High basal,2.73618275538384,6.53998636436828,4.22529620599728,6.63218552854144
Merged-chr2-4505024-3,chr2,4504902,4505157,+,880.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001177843, intron 5 of 23)",ID_B1|SINE|B4,-54725,NM_001177844,209630,Mm.37932,NM_172475,ENSMUSG00000026657,Frmd4a,2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294,FERM domain containing 4A,protein-coding,2.07,3.52,6.73,3.5,13.13,12.13,6.58,4.1,0,0,0,0,0,0,0,0,21.14,35.35,3.91,19.53,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,2.08469145257755,2.90856148613152,4.19752238158124,3.70220696009995
Merged-chr14-66847262-5,chr14,66847028,66847481,+,880.210022,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_009955, intron 3 of 13)","intron (NM_009955, intron 3 of 13)",21346,NM_009955,12934,Mm.352648,NM_009955,ENSMUSG00000022048,Dpysl2,AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2,dihydropyrimidinase-like 2,protein-coding,27.3,16.34,11.44,10.34,12.52,5.05,10.12,5.04,46.74,0,100.02,22.82,82.27,110.41,110.8,11.24,66.05,125.45,3.91,12.37,27.95,559.9,521.35,256.83,328.94,340.51,247.42,248.67,229.71,110.93,264.77,Equal basal,3.92123090261771,2.86610578731792,5.87676153866095,3.46425398100856
Merged-chr4-119965145-6,chr4,119964772,119965458,+,879.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_010657, intron 1 of 8)","intron (NM_010657, intron 1 of 8)",150437,NM_010657,16656,Mm.302758,NM_010657,ENSMUSG00000028634,Hivep3,2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3,human immunodeficiency virus type I enhancer binding protein 3,protein-coding,28.96,26.59,30.63,37.68,12.12,11.12,17.72,24.89,100.86,58.64,63.65,60.87,29.04,17.67,22.16,119.86,94.45,155.1,12.3,41.02,46.84,197.15,107.86,161.84,274.12,290.85,61.86,43.63,75.43,150.29,83.61,Equal basal,4.88516586019923,3.79607712320097,6.28141058531632,4.74220010309405
Merged-chr8-123280760-12,chr8,123280346,123281149,+,879.944458,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_016925, intron 30 of 42)",L1MB7|LINE|L1,-26525,NM_028200,72325,Mm.276193,NM_028200,ENSMUSG00000001062,Vps9d1,1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1,VPS9 domain containing 1,protein-coding,6.62,7.69,7.4,2.89,44.63,50.54,43.03,37.49,91.02,126.3,22.73,87.5,287.96,317.98,230.47,224.74,16.51,26.23,35.21,76.18,79.33,465.27,444.94,309.61,361.84,354.7,1565.71,1304.44,507.42,1334.75,1477.13,High basal,2.67957641791705,5.20958730202155,3.82846700313278,5.76854251315671
Merged-chr5-92934455-7,chr5,92934211,92934628,+,879.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001077596, intron 3 of 9)",MIR|SINE|MIR,36426,NM_001077596,27428,Mm.46014,NM_015756,ENSMUSG00000029381,Shroom3,AL022960|D5Ertd287e|Shrm|Shrm3,shroom family member 3,protein-coding,6.62,7.37,6.06,8.41,78.76,56.1,91.62,55.45,83.64,40.6,109.11,72.28,246.82,410.72,195.01,292.16,22.46,23.95,34.1,76.83,66.48,256.29,134.83,140.73,182.75,85.13,630.15,401.37,346.28,583.28,383.22,High basal,2.91341672054378,5.85491367789682,3.97414711371869,5.6740895169916
Merged-chr16-44833353-3,chr16,44833173,44833544,+,879.5,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"exon (NM_207244, exon 4 of 6)","exon (NM_207244, exon 4 of 6)",12630,NM_207244,239849,Mm.445045,NM_207244,ENSMUSG00000062082,Cd200r4,F630107N04Rik|MCD200RLa,CD200 receptor 4,protein-coding,3.31,2.56,4.71,3.68,22.01,14.15,7.09,10.4,0,0,0,0,0,0,0,0,27.08,44.48,3.35,37.11,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,2.10020483767874,3.4867305971886,4.52492004940372,4.04642709073165
Merged-chr16-45283293-5,chr16,45283120,45283519,+,878.533325,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MER67D|LTR|ERV1,58982,NM_177584,208154,Mm.38199,NM_177584,ENSMUSG00000052013,Btla,A630002H24,B and T lymphocyte associated,protein-coding,7.86,10.25,9.76,13.23,12.12,13.14,7.09,5.99,59.04,45.11,77.29,49.45,50.82,26.5,93.08,26.22,48.88,47.9,8.38,13.02,16.62,240.52,292.13,168.88,215.64,276.66,162.37,143.97,102.86,193.23,76.64,Equal basal,3.35641702435966,3.08121986317591,4.98653576208502,3.57716543814217
Merged-chr3-107357025-3,chr3,107356901,107357170,+,877.611084,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-23746,NM_001045807,229700,Mm.27966,NM_001045807,ENSMUSG00000048109,Rbm15,C230088J01Rik|mKIAA1438,RNA binding motif protein 15,protein-coding,12,13.46,12.12,9.11,14.74,7.58,11.14,13.55,0,0,0,0,0,0,0,0,53.5,53.6,13.97,17.58,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,3.55038848418337,3.35838182575377,5.12837127741548,4.27414245188226
Merged-chr1-152571520-4,chr1,152571354,152571684,+,877.5625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_016846, intron 4 of 17)","intron (NM_016846, intron 4 of 17)",53698,NM_016846,19731,Mm.245270,NM_016846,ENSMUSG00000026482,Rgl1,Rgl|mKIAA0959,"ral guanine nucleotide dissociation stimulator,-like 1",protein-coding,13.24,7.69,8.75,15.07,14.14,18.7,7.59,14.18,0,0,0,0,0,0,0,0,40.95,51.32,10.06,28.65,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.47285363238061,3.53204667256929,4.91076046671628,4.24683346848169
Merged-chr7-125503710-6,chr7,125503444,125504061,+,877.555542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-12210,NM_026330,67711,Mm.4467,NM_026330,ENSMUSG00000030750,Nsmce1,2510027N19Rik,"NSE1 homolog, SMC5-SMC6 complex component",protein-coding,11.58,10.57,16.83,14.46,23.43,23.25,35.94,21.43,0,4.51,0,0,0,0,26.59,0,65.39,50.18,13.41,44.92,57.42,55.2,94.38,63.33,40.2,14.19,57.99,61.08,113.14,67.99,62.71,Equal basal,3.72260568687433,4.46166930518151,5.22383165148407,4.91949876766093
Merged-chr8-79392812-4,chr8,79392507,79393044,+,877.483337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008539, intron 1 of 6)","intron (NM_008539, intron 1 of 6)",6693,NM_008539,17125,Mm.223717,NM_008539,ENSMUSG00000031681,Smad1,AI528653|Madh1|Madr1|Mlp1|MusMLP,SMAD family member 1,protein-coding,9.1,19.54,19.52,20.77,20.6,23.76,14.17,22.37,0,0,0,0,0,0,0,0,58.79,74.13,15.09,44.27,48.35,0,0,0,0,0,0,0,0,0,0,Equal basal,4.02783570557641,4.11834373421799,5.42205337580666,4.886147904258
Merged-chr11-57980561-9,chr11,57980310,57981101,+,877.462952,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-28359,NM_028451,73158,Mm.248843,NM_028451,ENSMUSG00000037331,Larp1,1810024J12Rik|3110040D16Rik|Larp|mKIAA0731,"La ribonucleoprotein domain family, member 1",protein-coding,9.1,16.02,21.2,16.04,26.45,9.6,26.83,28.67,223.87,58.64,177.3,155.97,200.85,172.24,425.49,288.42,31.04,75.27,12.3,39.72,30.22,753.1,728.09,415.16,500.72,290.85,823.45,850.72,507.42,826.61,947.6,Equal basal,3.90054102701844,4.18414376815735,4.98688823264275,4.52427505651443
Merged-chr8-69007280-8,chr8,69006997,69007537,+,877.395813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-81469,NM_007509,11966,Mm.249096,NM_007509,ENSMUSG00000006273,Atp6v1b2,AI194269|AI790362|Atp6b2|HO57|R74844,"ATPase, H+ transporting, lysosomal V1 subunit B2",protein-coding,16.55,5.77,13.46,15.68,25.04,16.68,32.4,18.27,83.64,121.79,54.55,34.24,116.15,141.32,155.13,67.42,44.25,31.93,15.09,30.6,42.31,350.92,462.92,330.72,369.15,631.36,576.02,492.98,315.42,508.13,306.58,Equal basal,3.61364850175361,4.27549942841065,4.63737824011611,4.65251893004995
Merged-chr11-77497832-4,chr11,77497563,77498015,+,877.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001004144, intron 1 of 19)","intron (NM_001004144, intron 1 of 19)",4377,NM_001004144,216963,Mm.290182,NM_001004144,ENSMUSG00000011877,Git1,Cat-1|p95Cat,G protein-coupled receptor kinase-interactor 1,protein-coding,20.27,13.46,5.05,12,25.44,18.7,10.12,13.23,0,0,0,0,0,0,0,0,40.95,65,11.18,40.37,44.57,0,0,0,0,0,0,0,0,0,0,Equal basal,3.51805627622071,3.82412494829235,5.07611824725676,4.66845824278588
Merged-chr2-155755921-8,chr2,155755755,155756060,+,877.354187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,TTS (NM_011171),TTS (NM_011171),4690,NM_011171,19124,Mm.3243,NM_011171,ENSMUSG00000027611,Procr,AI325044|Ccca|Ccd41|Epcr,"protein C receptor, endothelial",protein-coding,9.1,8.97,2.02,9.46,40.59,37.91,25.31,17.96,63.96,90.21,90.92,95.1,82.27,97.16,106.37,146.08,17.17,30.79,24.59,50.13,53.64,205.03,238.2,186.47,179.09,92.22,402.06,405.73,209.14,347.11,459.86,High basal,2.81876875673296,4.63222716127029,3.96338553953215,5.21909519693026
Merged-chr12-80818563-3,chr12,80818409,80818718,+,876.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001242419, intron 1 of 6)",MIRb|SINE|MIR,28031,NM_001242419,217684,Mm.341776,NM_178682,ENSMUSG00000021133,Susd6,4933426M11Rik|mKIAA0247,sushi domain containing 6,protein-coding,4.14,8.33,2.36,7.01,7.47,14.15,3.04,8.82,0,0,0,0,0,0,0,0,35.01,62.72,2.79,22.79,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,2.45937672820829,2.85385149656827,4.94190797058315,3.44375226013813
Merged-chr19-12591120-6,chr19,12590972,12591298,+,876.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_015503, intron 1 of 1)","intron (NR_015503, intron 1 of 1)",5431,NR_015503,74333,Mm.329744,NR_015503,ENSMUSG00000086213,A330040F15Rik,-,RIKEN cDNA A330040F15 gene,ncRNA,4.14,10.25,7.4,5.7,22.62,14.66,35.94,18.27,2.46,27.06,27.28,0,0,97.16,0,0,27.74,52.46,15.65,63.15,53.64,153.77,166.29,112.58,160.82,148.97,162.37,213.77,140.57,132.4,292.64,High basal,2.82905550551159,4.22706700007131,4.656269168609,5.11799739070173
Merged-chr12-34504409-3,chr12,34504275,34504579,+,875.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001271386, intron 4 of 27)","intron (NM_001271386, intron 4 of 27)",24462,NM_024124,79221,Mm.310551,NM_024124,ENSMUSG00000004698,Hdac9,AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744,histone deacetylase 9,protein-coding,6.21,3.2,3.03,11.74,11.91,15.16,17.72,12.92,0,0,0,0,0,0,0,0,35.01,45.62,8.38,20.83,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,2.5183314512646,3.65863958945814,4.7196937075815,4.15896331078684
Merged-chr8-25056664-4,chr8,25056489,25056812,+,874.6875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_031257, intron 9 of 11)","intron (NM_031257, intron 9 of 11)",-17688,NM_001081187,330723,Mm.334452,NM_001081187,ENSMUSG00000037406,Htra4,B430206E18Rik,HtrA serine peptidase 4,protein-coding,5.38,14.1,9.76,14.72,17.37,17.69,12.15,17.64,0,0,0,0,0,0,0,0,56.14,60.44,8.38,41.67,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,3.37563244268994,3.8310720284007,5.24629623952809,4.63437836640402
Merged-chr10-94039026-4,chr10,94038875,94039175,+,874.68335,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_053072, intron 1 of 20)","intron (NM_053072, intron 1 of 20)",3024,NM_053072,13998,Mm.269596,NM_053072,ENSMUSG00000020021,Fgd6,AA123052|Etohd4|ZFYVE24,"FYVE, RhoGEF and PH domain containing 6",protein-coding,4.14,5.77,1.01,7.01,13.73,22.24,24.3,11.03,46.74,45.11,22.73,60.87,38.72,75.08,119.67,89.9,31.7,43.34,13.41,42.32,27.2,153.77,220.22,49.26,120.61,170.25,173.97,126.52,140.57,232.6,188.13,High basal,2.12927218848771,3.90192856238371,4.61550061673956,4.54523640658954
Merged-chr16-55969332-3,chr16,55969216,55969443,+,874.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_024218, intron 3 of 5)",B1_Mm|SINE|Alu,3054,NM_024218,68193,Mm.29221,NM_024218,ENSMUSG00000098274,Rpl24,0610008L05Rik|Bst,ribosomal protein L24,protein-coding,2.48,10.57,2.36,3.33,13.33,7.08,14.17,5.36,0,0,0,0,0,0,0,0,15.19,44.48,6.15,22.79,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,2.16924459060377,3.09558816860758,4.13482174911056,3.67080160487966
Merged-chr1-181245168-4,chr1,181245017,181245377,+,874.416687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-33219,NM_145514,226757,Mm.289082,NM_145514,ENSMUSG00000038733,Wdr26,1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7,WD repeat domain 26,protein-coding,5.79,21.78,7.07,7.71,21.61,35.89,19.24,6.3,0,0,0,0,0,0,0,0,42.93,60.44,12.3,26.69,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.24844233541599,3.96028801154781,5.05809610101817,4.30503378373949
Merged-chr5-74471009-4,chr5,74470836,74471190,+,874.395874,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001114660, intron 3 of 8)",L1M2|LINE|L1,60729,NM_178672,212986,Mm.134147,NM_178672,ENSMUSG00000062110,Scfd2,E430013M20Rik|STXBP1L1,Sec1 family domain containing 2,protein-coding,7.86,12.49,10.1,13.14,14.94,9.6,22.27,15.75,0,0,0,0,0,0,0,0,35.67,45.62,12.86,32.55,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.43518308267132,3.73371377979427,4.73266983973476,4.59939673288814
Merged-chr7-83571313-4,chr7,83571149,83571529,+,873.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-13592,NM_177695,233424,Mm.486619,NM_177695,ENSMUSG00000038540,Tmc3,9030203A06,transmembrane channel-like gene family 3,protein-coding,3.72,9.29,11.11,12.71,17.17,7.08,28.35,15.44,0,0,0,0,0,0,0,0,49.54,74.13,12.3,40.37,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.10579067923458,3.7654620319492502,5.30168153524456,4.56508890931686
Merged-chr10-94093590-7,chr10,94093253,94093864,+,873.16394,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_053072, intron 5 of 20)",PB1D10|SINE|Alu,-54373,NM_011629,22025,Mm.107483,NM_011629,ENSMUSG00000005897,Nr2c1,4831444H07Rik|80.3|Eenr|TR2|Tr2-11,"nuclear receptor subfamily 2, group C, member 1",protein-coding,1.24,1.28,2.02,3.24,31.91,42.96,34.42,25.52,152.52,27.06,104.56,144.56,217.79,150.16,79.78,157.32,18.49,15.97,13.97,48.83,55.91,236.58,121.35,130.18,314.32,170.25,630.15,349.02,161.14,504.56,411.09,High basal,1.37693655773984,4.82344412337983,3.57528103272298,4.96463069592359
Merged-chr11-35290398-6,chr11,35290144,35290621,+,872.625,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_011412, intron 4 of 35)","intron (NM_011412, intron 4 of 35)",168926,NM_011412,20564,Mm.478604,NM_011412,ENSMUSG00000056427,Slit3,Slil2|Slit1|b2b2362.1Clo,slit guidance ligand 3,protein-coding,2.48,4.81,1.35,4.82,58.56,34.87,46.06,14.18,41.82,0,36.37,53.26,140.35,185.49,199.45,224.74,13.21,21.67,16.77,64.46,99.73,220.8,157.3,133.69,65.79,269.57,784.79,1125.57,534.85,694.21,647.99,High basal,1.92355856435847,4.85416832149816,3.55315740595183,5.4517227010413
Merged-chr3-144699768-4,chr3,144699633,144699902,+,871.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_019464, intron 5 of 8)","intron (NM_019464, intron 5 of 8)",20568,NM_001282042,54673,Mm.271775,NM_019464,ENSMUSG00000037062,Sh3glb1,AA409932|AI314629|AU015566|Bif-1|mKIAA0491,SH3-domain GRB2-like B1 (endophilin),protein-coding,7.45,12.81,7.07,17,17.17,14.15,16.2,12.6,0,0,0,0,0,0,0,0,45.57,45.62,7.27,18.23,13.6,0,0,0,0,0,0,0,0,0,0,Equal basal,3.40791323355677,3.73779189119814,4.90361639167805,3.57507148479971
Merged-chr13-23730619-6,chr13,23730473,23730794,+,871.34259,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-8174,NM_015786,50708,Mm.193539,NM_015786,ENSMUSG00000036181,Hist1h1c,0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a,"histone cluster 1, H1c",protein-coding,8.27,2.56,4.04,2.1,27.26,42.96,21.77,18.59,17.22,0,0,0,116.15,176.65,31.03,67.42,16.51,21.67,15.65,24.09,34.75,228.69,103.37,80.92,113.3,141.88,340.2,383.92,185.14,415.1,480.77,High basal,2.17948340425424,4.49056833762392,3.70032984616659,4.46839892320525
Merged-chr11-54972559-4,chr11,54972421,54972718,+,871.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-9629,NM_001271455,57783,Mm.259671,NM_021327,ENSMUSG00000020400,Tnip1,ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN,TNFAIP3 interacting protein 1,protein-coding,7.03,23.07,7.4,5.96,24.44,26.28,17.21,11.03,0,0,0,0,0,0,0,0,36.99,52.46,24.03,35.81,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.25854672647473,4.03437221184514,4.85518111751876,4.94072837719315
Merged-chr6-16978086-4,chr6,16977847,16978433,+,869.150024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-79699,NM_031198,21426,Mm.36217,NM_031198,ENSMUSG00000029553,Tfec,BB107417|Tcfec|bHLHe34,transcription factor EC,protein-coding,16.55,16.66,12.45,17.35,16.96,25.78,13.67,25.52,0,0,0,0,0,0,0,0,55.48,72.99,11.18,49.48,63.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.9550118069484,4.10375369474101,5.37041375862713,4.92891317159418
Merged-chr19-18620406-4,chr19,18620096,18620753,+,868.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_017375, intron 1 of 9)","intron (NM_017375, intron 1 of 9)",11389,NM_017375,20409,Mm.172222,NM_017375,ENSMUSG00000024725,Ostf1,C78236|SH3P2|Sh3d3,osteoclast stimulating factor 1,protein-coding,10.76,19.86,16.15,11.83,16.36,23.25,14.68,10.71,0,0,0,0,0,0,0,0,61.43,78.69,12.3,39.72,43.06,0,0,0,0,0,0,0,0,0,0,Equal basal,3.83722707497455,3.79104865439031,5.49514026205195,4.68800575509941
Merged-chr9-95575814-4,chr9,95575653,95575956,+,868.6875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,15987,NM_198414,75552,Mm.151485,NM_198414,ENSMUSG00000064225,Paqr9,1700020G04Rik,progestin and adipoQ receptor family member IX,protein-coding,9.1,18.9,9.09,8.15,15.15,25.27,15.69,9.77,0,0,0,0,0,0,0,0,39.63,70.71,7.27,33.86,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,3.4336203972571,3.77500142711911,5.11233490278764,4.47496504499971
Merged-chr1-191643143-6,chr1,191642926,191643293,+,868.620361,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L1MA8|LINE|L1,67473,NM_001306204,77065,Mm.338175,NM_178632,ENSMUSG00000037461,Ints7,5930412E23Rik|int7,integrator complex subunit 7,protein-coding,10.34,15.38,7.07,11.65,13.13,9.1,11.64,3.78,14.76,85.7,18.18,22.82,50.82,39.75,8.86,0,44.91,57.02,4.47,18.88,27.95,279.95,404.49,232.21,208.33,290.85,135.31,109.07,44.57,196.81,306.58,Equal basal,3.43123326671632,3.00070168221563,5.04886820530784,3.7059883161817
Merged-chr2-24571079-4,chr2,24570886,24571258,+,868.608337,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-95473,NM_011040,18510,Mm.2533,NM_011040,ENSMUSG00000026976,Pax8,Pax-8,paired box 8,protein-coding,10.34,14.74,19.86,19.8,14.14,17.18,27.84,7.56,0,0,0,0,0,0,0,0,48.22,83.25,13.97,22.14,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95146547640325,3.75014047366025,5.36457378568163,4.46077224365231
Merged-chr12-34486136-4,chr12,34485941,34486327,+,868.541626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001271386, intron 4 of 27)","intron (NM_001271386, intron 4 of 27)",42755,NM_024124,79221,Mm.310551,NM_024124,ENSMUSG00000004698,Hdac9,AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744,histone deacetylase 9,protein-coding,6.21,8.65,9.42,11.83,14.14,11.12,20.75,13.86,0,0,0,0,0,0,0,0,38.31,57.02,15.65,31.25,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.17495520196109,3.70437730977331,4.93782949352814,4.4877161667113
Merged-chr1-36089658-4,chr1,36089510,36089839,+,868.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_015818, intron 1 of 1)","intron (NM_015818, intron 1 of 1)",21274,NM_015818,50785,Mm.213566,NM_015818,ENSMUSG00000045216,Hs6st1,6Ost1,heparan sulfate 6-O-sulfotransferase 1,protein-coding,11.17,14.1,18.17,21.03,14.34,26.28,8.61,15.12,0,0,0,0,0,0,0,0,72.66,74.13,8.38,36.46,52.88,0,0,0,0,0,0,0,0,0,0,Equal basal,3.95878855936941,3.72756022377113,5.57169715062531,4.57228198901517
Merged-chr11-45754062-4,chr11,45753879,45754232,+,867.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-54028,NR_045876,100009664,Mm.415439,NR_045876,NA,F630206G17Rik,-,RIKEN cDNA F630206G17 gene,ncRNA,10.34,9.29,5.05,11.74,15.95,8.59,10.12,8.51,0,0,0,0,0,0,0,0,31.7,47.9,8.38,21.49,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.14971630695517,3.2374431904271,4.68495265656766,4.10323194043268
Merged-chr1-165188976-4,chr1,165188830,165189113,+,866.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_151711, intron 1 of 6)","intron (NR_151711, intron 1 of 6)",5462,NM_145512,108735,Mm.288369,NM_145512,ENSMUSG00000040848,Sft2d2,2010005O13Rik|AI506168|AW561909|cI-45,SFT2 domain containing 2,protein-coding,5.79,15.06,4.38,8.59,17.97,10.61,24.3,10.4,0,0,0,0,0,0,0,0,27.74,44.48,14.53,30.6,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,2.99516533620187,3.7048842734418,4.54146854269505,4.45620376654425
Merged-chr14-121408126-2,chr14,121407998,121408260,+,865.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-28899,NM_145465,223255,Mm.390756,NM_145465,ENSMUSG00000063410,Stk24,1810013H02Rik|C76483|MST-3|Mst3|STE20,serine/threonine kinase 24,protein-coding,1.65,3.2,4.38,2.19,7.88,13.14,8.1,3.47,0,0,0,0,0,0,0,0,20.48,29.65,4.47,20.83,22.66,0,0,0,0,0,0,0,0,0,0,Equal basal,1.7964819675552,2.80261528075649,4.05585343346661,3.65498385768083
Merged-chr16-76283677-6,chr16,76283347,76284168,+,865.444458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,89292,NM_173440,268903,Mm.74711,NM_173440,ENSMUSG00000048490,Nrip1,6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140,nuclear receptor interacting protein 1,protein-coding,13.65,26.59,19.86,23.83,32.71,23.25,53.66,20.17,0,0,0,0,0,0,0,0,65.39,119.75,18.44,52.09,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.30643581914819,4.70051293848929,5.83658931349352,5.04733146196723
Merged-chr1-74240359-4,chr1,74240176,74240702,+,865.291687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357387, intron 2 of 10)","intron (NM_001357387, intron 2 of 10)",3922,NM_029711,76709,Mm.337038,NM_029711,ENSMUSG00000006304,Arpc2,2210023N03Rik|34kDa|p34-Arc,"actin related protein 2/3 complex, subunit 2",protein-coding,14.48,12.17,16.83,13.67,18.38,18.2,20.25,17.64,0,0,0,0,0,0,0,0,48.88,44.48,10.06,29.95,38.53,0,0,0,0,0,0,0,0,0,0,Equal basal,3.82632521929425,4.03398230799417,4.93508362331181,4.41507368109311
Merged-chr1-9772945-6,chr1,9772803,9773085,+,865.103149,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-24562,NM_173443,70675,Mm.274493,NM_173443,ENSMUSG00000045210,Vcpip1,4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850,valosin containing protein (p97)/p47 complex interacting protein 1,protein-coding,12.82,9.61,4.71,14.02,21.61,15.16,17.21,12.92,14.76,27.06,22.73,26.63,2.42,4.42,44.32,3.75,33.03,30.79,13.97,21.49,29.46,149.83,139.33,91.48,116.96,148.97,112.11,161.42,116.57,107.35,139.35,Equal basal,3.30407590886246,3.8594059747315,4.40883875865269,4.28850635136538
Merged-chr18-50095877-4,chr18,50095724,50096028,+,865.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ID_B1|SINE|B4,-32325,NM_008292,15488,Mm.277857,NM_008292,ENSMUSG00000024507,Hsd17b4,17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2,hydroxysteroid (17-beta) dehydrogenase 4,protein-coding,18.2,10.89,4.71,20.85,14.34,18.2,14.68,11.97,0,0,0,0,0,0,0,0,44.91,72.99,11.18,26.69,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.60806141119797,3.70031540905253,5.22209874308962,4.45307625214409
Merged-chr7-31082977-2,chr7,31082723,31083194,+,864.900024,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-6261,NM_008557,17178,Mm.263847,NM_008557,ENSMUSG00000057092,Fxyd3,Mat8,FXYD domain-containing ion transport regulator 3,protein-coding,3.72,5.13,6.73,11.3,0.81,1.52,1.01,5.36,0,0,0,45.65,0,0,0,18.73,41.61,47.9,2.79,5.21,3.02,86.74,62.92,91.48,113.3,184.44,38.66,21.81,65.14,50.1,104.51,Equal basal,2.74256653868556,1.25765153749537,4.87390322468622,2.06966759643589
Merged-chr2-131509988-4,chr2,131509730,131510384,+,864.479187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001177840, intron 1 of 3)","intron (NM_001177840, intron 1 of 3)",18195,NM_001177838,228608,Mm.136586,NM_145533,ENSMUSG00000027333,Smox,B130066H01Rik|PAO|PAOh1|SMO,spermine oxidase,protein-coding,19.86,17.62,21.54,17,31.1,22.74,28.35,20.17,0,0,0,0,0,0,0,0,57.46,84.39,13.41,35.81,84.62,0,0,0,0,0,0,0,0,0,0,Equal basal,4.21847125283443,4.44607747683267,5.49750059865407,4.9966143833943
Merged-chr10-82969758-4,chr10,82969475,82969987,+,864.188904,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER17D2|LTR|ERVK,-15766,NM_021439,58250,Mm.360747,NM_021439,ENSMUSG00000034612,Chst11,1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s,carbohydrate sulfotransferase 11,protein-coding,11.58,5.13,10.77,4.12,6.06,1.01,6.07,6.3,91.02,54.13,127.29,98.91,24.2,0,44.32,71.17,25.1,39.92,4.47,10.42,11.33,335.15,215.73,116.1,171.78,297.94,119.84,95.98,150.85,211.13,257.8,Equal basal,2.95687791631703,2.1785664083876,4.39800459313838,3.04431197554573
Merged-chr1-181138910-3,chr1,181138732,181139076,+,864,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_026171, intron 4 of 22)","intron (NM_026171, intron 4 of 22)",5300,NM_026171,67459,Mm.263464,NM_026171,ENSMUSG00000026516,Nvl,1200009I24Rik,nuclear VCP-like,protein-coding,4.14,1.28,2.02,4.64,33.93,10.11,24.3,18.59,0,0,0,0,0,0,0,0,15.19,20.53,20.68,33.2,64.97,0,0,0,0,0,0,0,0,0,0,High basal,1.83943936908914,4.12694133204301,3.60907358543758,5.03649765785707
Merged-chr4-138023684-3,chr4,138023499,138023943,+,863.666687,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001355699, intron 1 of 32)",MTD|LTR|ERVL-MaLR,25896,NM_001355700,230861,Mm.268903,NM_172703,ENSMUSG00000028760,Eif4g3,1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8,"eukaryotic translation initiation factor 4 gamma, 3",protein-coding,4.96,3.2,2.36,6.31,0.2,4.04,1.01,1.89,120.54,40.6,27.28,76.08,14.52,8.83,44.32,44.95,28.4,44.48,3.91,1.95,0,295.72,265.17,218.13,215.64,510.76,50.26,61.08,82.28,25.05,0,Equal basal,2.19938775316287,1.12309106868501,4.55764589411383,1.32825039801001
Merged-chr10-31557381-1,chr10,31557233,31557530,+,863,.//peakIDR//BALBCJ_F0_Control.idr,"intron (NM_001146349, intron 1 of 5)","intron (NM_001146349, intron 1 of 5)",52344,NM_001146349,268291,Mm.295212,NM_001146349,ENSMUSG00000063760,Rnf217,AU016819|Ibrdc1,ring finger protein 217,protein-coding,4.55,6.09,7.4,12.35,5.45,6.57,4.05,1.89,0,0,0,0,0,0,0,0,42.93,39.92,3.35,7.81,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.89928255648026,2.11176402523865,4.76941898308797,2.67746361493947
Merged-chr6-34610675-4,chr6,34610493,34610840,+,862.424988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001347100, intron 1 of 13)",MER94|DNA|hAT-Blackjack,12162,NM_001347100,109624,Mm.308134,NM_145575,ENSMUSG00000029761,Cald1,4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik,caldesmon 1,protein-coding,7.03,4.16,10.77,7.97,2.83,15.67,14.17,5.67,29.52,36.09,86.38,30.43,60.5,13.25,8.86,7.49,22.46,43.34,9.5,9.11,15.11,331.21,346.07,253.32,241.22,454.01,166.24,231.22,78.86,175.34,125.42,Equal basal,2.8997322314215,2.92130983564667,4.3790491223511,3.43803182205161
Merged-chr3-9850002-6,chr3,9849705,9850244,+,862.282715,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-16295,NM_001195031,94212,Mm.23897,NM_053182,ENSMUSG00000027508,Pag1,Cbp|F730007C19Rik|Pag,phosphoprotein associated with glycosphingolipid microdomains 1,protein-coding,8.27,17.3,22.55,26.99,33.12,22.74,25.31,18.59,29.52,67.66,50.01,26.63,53.24,79.49,26.59,56.19,46.24,86.67,13.97,40.37,32.49,90.69,242.7,77.4,131.58,163.16,216.49,95.98,68.57,157.45,229.93,Equal basal,4.09816386563856,4.39525060238518,5.36361274808635,4.62334769788639
Merged-chr16-45371168-4,chr16,45370862,45371523,+,861.705566,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,37861,NM_001358443,17470,Mm.245851,NM_010818,ENSMUSG00000022661,Cd200,Mox2|OX2,CD200 antigen,protein-coding,22.75,12.49,15.82,18.66,4.24,1.01,3.04,8.82,34.44,54.13,27.28,125.54,14.52,26.5,39.89,33.71,65.39,119.75,3.35,7.16,12.84,354.86,404.49,175.91,409.35,262.48,61.86,113.43,96,85.88,0,Low basal,4.05863911370985,1.98508042049404,5.83658931349352,2.82545621824571
Merged-chr2-169918689-5,chr2,169918486,169918845,+,860.299988,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER20C_Mm|LTR|ERVK,44522,NR_131974,446211,Mm.266854,NR_131974,ENSMUSG00000103935,AY702102,STDP1,cDNA sequence AY702102,ncRNA,0,0,0,0.09,38.37,25.78,41,18.27,29.52,0,13.64,19.02,75.01,70.66,75.35,48.69,0.66,3.42,18.44,44.27,42.31,67.03,98.88,35.18,120.61,78.03,259.02,274.85,126.86,239.75,348.38,High basal,0,4.6523496393829,1.0504086177965,4.91640940123074
Merged-chr18-46409186-5,chr18,46409005,46409356,+,859.295227,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,56636,NR_045438,72076,Mm.82766,NM_028086,NA,Mospd4,2010013H21Rik,motile sperm domain containing 4,pseudo,1.65,3.2,6.06,3.07,10.9,17.18,22.78,15.12,66.42,45.11,4.55,7.61,84.69,66.25,44.32,131.1,12.55,14.83,10.62,29.3,30.98,149.83,94.38,66.85,73.1,127.69,197.16,122.16,144,193.23,139.35,High basal,2.00738390231644,3.82567705390886,3.27107600730344,4.32852177770922
Merged-chr12-3301574-4,chr12,3301372,3301714,+,858.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_016676, intron 1 of 5)","intron (NM_016676, intron 1 of 5)",8426,NM_016676,19325,Mm.378993,NM_016676,ENSMUSG00000020671,Rab10,AW107754,"RAB10, member RAS oncogene family",protein-coding,7.45,15.38,6.06,11.3,19.79,23.76,13.16,5.99,0,0,0,0,0,0,0,0,42.93,55.88,7.83,35.16,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.29623407213421,3.63019361429646,5.00319045576785,4.42083773772805
Merged-chr13-110600546-4,chr13,110600410,110600665,+,858.599976,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,205493,NM_152804,20620,Mm.380,NM_152804,ENSMUSG00000021701,Plk2,Snk,polo like kinase 2,protein-coding,15.72,12.81,13.46,14.9,9.9,15.67,10.63,5.04,9.84,67.66,0,72.28,14.52,17.67,0,22.47,64.07,50.18,10.06,20.83,12.84,228.69,283.14,182.95,190.06,255.38,224.22,187.6,61.71,57.25,118.45,Equal basal,3.83380068334712,3.1302417356744,5.20941745802429,3.7546556988397
Merged-chr7-134689230-7,chr7,134689084,134689408,+,858.523804,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033420, intron 1 of 51)","intron (NM_001033420, intron 1 of 51)",18559,NM_001033420,330662,Mm.436572,NM_001033420,ENSMUSG00000058325,Dock1,9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo,dedicator of cytokinesis 1,protein-coding,12.41,16.98,3.37,9.81,22.42,11.62,22.78,17.96,51.66,85.7,81.83,53.26,67.76,30.91,79.78,86.15,44.25,30.79,8.38,49.48,27.95,465.27,328.09,228.69,420.31,397.26,282.21,357.74,257.14,440.14,236.9,Equal basal,3.26979109911122,3.97046678152913,4.61256775026485,4.41933262742028
Merged-chr10-14475837-3,chr10,14475664,14476008,+,858,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001002268, intron 2 of 24)","intron (NM_001002268, intron 2 of 24)",69200,NM_001002268,215798,Mm.440142,NM_001002268,ENSMUSG00000039116,Adgrg6,1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126,adhesion G protein-coupled receptor G6,protein-coding,0,3.52,0.67,7.8,8.68,7.58,6.07,13.23,12.3,13.53,27.28,22.82,12.1,0,79.78,0,20.48,47.9,5.03,23.44,21.15,82.8,49.44,35.18,105.99,42.56,50.26,8.73,17.14,100.2,41.81,Equal basal,1.43427841543238,2.99936256399739,4.38590255788894,3.72643146640998
Merged-chr10-84401313-4,chr10,84401174,84401457,+,857.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001004363, intron 2 of 6)","intron (NM_001004363, intron 2 of 6)",39156,NM_001004363,77976,Mm.25874,NM_001004363,ENSMUSG00000020032,Nuak1,AU014801|AW494241|B230104P22Rik|Omphk1,"NUAK family, SNF1-like kinase, 1",protein-coding,4.96,11.85,7.4,13.93,14.94,8.59,8.1,10.71,0,0,0,0,0,0,0,0,47.56,53.6,8.38,22.14,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.2107234751754,3.23881389907926,5.04567519880349,3.93712188687066
Merged-chr4-34494601-4,chr4,34494461,34494739,+,856.8125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-56015,NM_001007589,433693,Mm.389532,NM_026019,ENSMUSG00000028291,Akirin2,2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2,akirin 2,protein-coding,12.41,12.17,5.72,11.74,7.88,5.05,13.16,10.4,0,0,0,0,0,0,0,0,44.25,55.88,6.71,25.39,21.15,0,0,0,0,0,0,0,0,0,0,Equal basal,3.36232025716496,3.01541275184823,5.02437946933613,3.88592711132631
Merged-chr9-66883828-4,chr9,66883621,66884113,+,856.666626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_173413, intron 1 of 7)",B1_Mus2|SINE|Alu,35838,NM_173413,235442,Mm.260376,NM_173413,ENSMUSG00000036943,Rab8b,5930437D16|D330025I23Rik,"RAB8B, member RAS oncogene family",protein-coding,27.3,14.74,17.5,21.64,23.83,17.18,14.68,17.33,0,0,0,0,0,0,0,0,76.62,77.55,13.41,35.81,47.6,0,0,0,0,0,0,0,0,0,0,Equal basal,4.28402246203208,3.9758204639766,5.64110439407573,4.72616212307951
Merged-chr19-44343883-9,chr19,44343456,44344172,+,855.81481900000006,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_183216, intron 5 of 5)","intron (NM_183216, intron 5 of 5)",10488,NM_183216,329065,Mm.313583,NM_183216,ENSMUSG00000050195,Scd4,ACOD4,stearoyl-coenzyme A desaturase 4,protein-coding,16.55,21.46,11.11,15.68,31.71,35.38,40.5,25.84,118.08,0,27.28,102.71,29.04,0,35.46,86.15,52.18,85.53,24.03,59.25,53.64,272.06,238.2,211.1,233.91,319.23,301.54,248.67,61.71,214.7,348.38,Equal basal,3.9606679183283102,4.82025091512102,5.43911424166648,5.28678059864869
Merged-chr19-21068967-5,chr19,21068805,21069138,+,855.450012,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,(CACCAT)n|Simple_repeat|Simple_repeat,-35739,NR_126458,75354,Mm.243873,NR_126458,NA,4930554I06Rik,-,RIKEN cDNA 4930554I06 gene,ncRNA,11.58,18.58,20.87,10.25,9.9,22.74,9.11,6.3,81.18,90.21,86.38,79.89,58.08,83.91,84.21,0,41.61,92.38,6.71,22.79,18.89,745.22,764.04,411.64,741.95,943.49,487.11,475.53,305.14,397.2,564.38,Equal basal,3.87907056304715,3.2960662690287,5.33498852224094,3.78578919801915
Merged-chr10-18048668-12,chr10,18048271,18049190,+,855.338867,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,B1_Mur1|SINE|Alu,-7210,NM_009048,19707,Mm.4479,NM_009048,ENSMUSG00000019854,Reps1,BB161292,RalBP1 associated Eps domain containing protein,protein-coding,41.78,46.13,33.32,42.85,22.01,17.18,48.59,23.63,177.13,139.83,227.31,91.3,67.76,101.58,84.21,97.39,95.11,169.92,15.09,57.29,67.24,828.02,755.05,270.91,968.55,1035.71,460.05,597.69,222.85,454.46,473.8,Equal basal,5.28048385299209,4.47380283141533,6.3514961790613,5.16158377557661
Merged-chr8-40851187-3,chr8,40850995,40851390,+,855,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11175,NM_007514,11988,Mm.4676,NM_007514,ENSMUSG00000031596,Slc7a2,20.5|AI158848|Atrc2|CAT-2|Cat2|Tea,"solute carrier family 7 (cationic amino acid transporter, y+ system), member 2",protein-coding,1.24,3.2,5.38,5.96,66.64,62.67,76.94,40.65,0,0,0,0,0,0,0,0,19.82,25.09,46.95,126.96,148.83,0,0,0,0,0,0,0,0,0,0,High basal,2.04293804900085,5.66547770942392,3.92067696517037,6.44537595237875
Merged-chr1-62706440-4,chr1,62706183,62706739,+,854.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001077404, intron 1 of 16)",CpG,3144,NM_001077407,18187,Mm.266341,NM_010939,ENSMUSG00000025969,Nrp2,1110048P06Rik|Np-2|Np2|Npn-2|Npn2,neuropilin 2,protein-coding,22.34,16.34,13.8,19.72,18.78,15.67,14.68,16.7,0,0,0,0,0,0,0,0,58.12,77.55,12.86,26.04,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,4.12154156613226,3.83638531633567,5.44588391405249,4.57462309169547
Merged-chr12-8682230-4,chr12,8682074,8682373,+,854.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030723, intron 1 of 20)",MTC|LTR|ERVL-MaLR,7542,NM_030723,80913,Mm.341243,NM_030723,ENSMUSG00000020594,Pum2,5730503J23Rik|Pumm2,pumilio RNA-binding family member 2,protein-coding,7.45,11.53,10.77,4.91,13.13,24.26,17.21,7.88,0,0,0,0,0,0,0,0,40.95,62.72,5.59,35.81,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.12542810630113,3.68187510246016,5.05105900362467,4.18223779154885
Merged-chr18-67607595-7,chr18,67607361,67607792,+,854.559509,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,33779,NM_001357523,225659,Mm.111928,NM_001081073,ENSMUSG00000073542,Cep76,6230425F05Rik|9630013E05,centrosomal protein 76,protein-coding,33.51,27.87,24.57,31.19,27.26,32.35,33.41,28.67,68.88,0,104.56,30.43,99.21,22.08,48.75,52.44,78.6,116.32,26.83,26.69,47.6,98.57,134.83,59.81,95.03,85.13,119.84,100.34,89.14,107.35,125.42,Equal basal,4.80430014732916,4.7023157930408,5.9462106780691,4.91160708245934
Merged-chr3-54493787-6,chr3,54493627,54494013,+,854.527771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,132713,NM_015784,50706,Mm.236067,NM_015784,ENSMUSG00000027750,Postn,A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN,"periostin, osteoblast specific factor",protein-coding,8.27,7.05,3.37,6.92,10.5,2.53,12.15,3.15,56.58,81.19,122.75,45.65,75.01,123.66,172.85,131.1,33.69,29.65,5.03,13.67,9.07,481.04,426.96,309.61,570.17,262.48,541.23,362.1,229.71,529.6,55.74,Equal basal,2.74304868652609,2.49060934632288,4.39686080544506,3.11719522150849
Merged-chr10-121460697-7,chr10,121460498,121460839,+,854.142883,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_138956, intron 1 of 4)","intron (NM_138956, intron 1 of 4)",15582,NM_138956,192678,Mm.41265,NM_138956,ENSMUSG00000025795,Rassf3,AW212023|AW322379,Ras association (RalGDS/AF-6) domain family member 3,protein-coding,3.72,11.85,6.06,4.82,23.83,15.16,11.14,6.93,27.06,99.23,50.01,114.12,21.78,97.16,26.59,71.17,27.08,34.21,4.47,35.16,43.06,149.83,256.18,102.03,190.06,290.85,131.44,257.4,99.43,164.61,285.67,Equal basal,2.69139406121274,3.55797978156254,4.34402682380214,4.1895360564546396
Merged-chr11-64610822-9,chr11,64610457,64611087,+,853.575684,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLTR11B|LTR|ERVK,-174098,NR_028445,654805,Mm.436132,NR_028445,NA,F930015N05Rik,-,RIKEN cDNA F930015N05 gene,ncRNA,21.93,17.62,16.83,16.56,16.16,16.68,14.17,7.88,177.13,94.72,159.12,45.65,123.41,251.73,70.91,48.69,44.25,86.67,8.38,18.88,6.8,540.18,575.28,228.69,332.6,248.29,239.69,191.96,144,175.34,167.22,Equal basal,4.15045180392536,3.55389374996157,5.3329524258334,3.36456781594957
Merged-chr10-60269832-4,chr10,60269670,60270059,+,853.200012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-7764,NM_001146123,19156,Mm.29978,NM_011179,ENSMUSG00000004207,Psap,AI037048|SGP-1,prosaposin,protein-coding,17.38,23.39,11.44,18.58,18.38,19.21,17.72,11.66,0,0,0,0,0,0,0,0,55.48,54.74,17.33,37.76,24.93,0,0,0,0,0,0,0,0,0,0,Equal basal,4.08650302686397,3.84837641743186,5.16865486884534,4.57005243439649
Merged-chr3-15262003-2,chr3,15261874,15262120,+,853.111084,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,70305,NM_001076679,751864,Mm.431296,NM_001076679,ENSMUSG00000078783,Gm9733,-,predicted gene 9733,protein-coding,0.83,0,2.02,1.05,0.61,0.51,1.01,1.89,0,0,0,26.63,0,26.5,26.59,0,19.15,37.63,1.68,1.95,0.76,216.86,332.58,94.99,222.95,120.6,65.72,34.9,0,10.74,34.84,Equal basal,0.859070896428327,0.690022738253685,4.17405639989587,1.21391630222087
Merged-chr16-38442909-7,chr16,38442692,38443119,+,853.011902,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9760,NM_134102,85031,Mm.279805,NM_134102,ENSMUSG00000002847,Pla1a,AA986889|Ps-pla1|Pspla1,phospholipase A1 member A,protein-coding,13.24,11.53,15.14,13.23,16.56,25.78,33.92,20.17,54.12,63.15,45.46,0,65.34,17.67,101.94,0,53.5,59.3,15.09,59.9,53.64,63.09,139.33,24.63,149.85,156.07,96.65,117.79,89.14,67.99,48.77,Equal basal,3.73178149845663,4.33170413711046,5.19904125579412,5.07638231883637
Merged-chr16-33023940-8,chr16,33023761,33024124,+,852.583313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_178378, intron 8 of 10)",LTR41B|LTR|ERVL,32244,NM_178378,69707,Mm.227918,NM_178378,ENSMUSG00000035578,Iqcg,2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d,IQ motif containing G,protein-coding,19.03,16.34,8.75,10.87,8.48,15.16,17.21,12.92,137.76,239.06,131.84,79.89,94.37,97.16,106.37,89.9,21.8,63.86,5.59,13.67,25.69,666.36,741.57,292.02,657.88,517.86,359.53,497.35,284.57,390.05,438.96,Equal basal,3.72516109739829,3.55571206227052,4.62919482716734,3.61781261761602
Merged-chr7-123431409-4,chr7,123431226,123431600,+,852.1875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,23596,NM_001355050,30949,Mm.260527,NM_025304,ENSMUSG00000030763,Lcmt1,AL033290|LCMT-1|Lcmt,leucine carboxyl methyltransferase 1,protein-coding,12.82,11.53,9.09,15.6,14.14,6.07,15.19,11.34,0,0,0,0,0,0,0,0,58.79,53.6,9.5,24.74,23.42,0,0,0,0,0,0,0,0,0,0,Equal basal,3.59306329535251,3.35087337615932,5.19467879202404,4.07356009305566
Merged-chr4-155197873-4,chr4,155197720,155198018,+,852.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_011385, intron 1 of 6)","intron (NM_011385, intron 1 of 6)",24666,NM_011385,20481,Mm.28520,NM_011385,ENSMUSG00000029050,Ski,2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088,ski sarcoma viral oncogene homolog (avian),protein-coding,13.65,13.13,16.49,19.54,8.89,28.3,16.7,11.03,0,0,0,0,0,0,0,0,52.18,85.53,10.06,29.3,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.92867550852941,3.70844618635474,5.43911424166648,4.34707929215129
Merged-chr14-57395077-4,chr14,57394945,57395231,+,851.083313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_030004, intron 1 of 7)","intron (NM_030004, intron 1 of 7)",3395,NM_030004,68631,Mm.25539,NM_030004,ENSMUSG00000021947,Cryl1,1110025H08Rik|A230106J09Rik|C85932|gul3dh,"crystallin, lambda 1",protein-coding,5.79,8.65,7.4,11.48,13.33,18.7,19.24,7.25,0,0,0,0,0,0,0,0,27.08,68.43,10.62,22.79,23.42,0,0,0,0,0,0,0,0,0,0,Equal basal,3.08694778190567,3.60312621560096,4.82578375567679,4.08600323586817
Merged-chr13-94159003-5,chr13,94158709,94159361,+,850.450012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172589, intron 2 of 3)","intron (NM_172589, intron 2 of 3)",101239,NM_172589,218454,Mm.316553,NM_172589,ENSMUSG00000045312,Lhfpl2,6030465B15|AI447312|AW050335|mKIAA0206|vgim,lipoma HMGIC fusion partner-like 2,protein-coding,28.55,50.3,25.58,22.26,28.47,23.25,20.75,15.75,0,0,0,0,0,0,0,0,80.58,148.26,17.89,56.64,53.64,0,0,0,0,0,0,0,0,0,0,Equal basal,4.85758275486012,4.22938658695787,6.13646556249153,5.12836476353219
Merged-chr15-97824131-4,chr15,97823840,97824334,+,850.3125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001204280, intron 1 of 21)","intron (NM_001204280, intron 1 of 21)",7680,NM_019572,56233,Mm.384027,NM_019572,ENSMUSG00000022475,Hdac7,5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062,histone deacetylase 7,protein-coding,33.92,22.43,19.52,16.39,12.32,16.17,15.19,16.7,0,0,0,0,0,0,0,0,77.28,92.38,8.38,21.49,34.75,0,0,0,0,0,0,0,0,0,0,Equal basal,4.44371917451539,3.73883029764738,5.77075153891866,4.13432688695201
Merged-chr17-33865612-8,chr17,33865370,33865854,+,849.932129,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,21121,NR_128569,104796139,NA,NR_128569,ENSMUSG00000098621,Gm27740,Mir6967-2|mmu-mir-6967-2,"predicted gene, 27740",ncRNA,17.79,28.83,15.82,22.87,26.45,27.8,16.7,19.22,88.56,99.23,63.65,178.79,108.89,83.91,35.46,104.88,58.79,79.83,11.18,41.02,29.46,343.04,373.03,140.73,197.37,312.13,278.35,213.77,181.71,161.03,111.48,Equal basal,4.33519650777686,4.24706576128538,5.47428936036203,4.48451098128651
Merged-chr18-58688466-2,chr18,58688212,58688686,+,849.583374,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,RLTR12B|LTR|ERVK,28967,NM_025478,66307,Mm.182574,NM_025478,ENSMUSG00000024601,Isoc1,2610034N03Rik,isochorismatase domain containing 1,protein-coding,2.48,9.61,4.71,7.1,6.26,6.07,4.05,1.58,0,13.53,0,7.61,9.68,0,26.59,0,29.72,33.07,2.24,7.81,7.55,138,107.86,45.74,54.82,127.69,7.73,26.18,27.43,46.52,41.81,Equal basal,2.60066616359456,2.06202609503615,4.38484452705621,2.48457858732928
Merged-chr2-13538879-4,chr2,13538667,13539122,+,849.458374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010067, intron 1 of 10)","intron (NM_010067, intron 1 of 10)",5770,NM_010067,13434,Mm.6979,NM_010067,ENSMUSG00000026723,Trdmt1,Dnmt2|Rnmt2,tRNA aspartic acid methyltransferase 1,protein-coding,16.55,22.11,13.13,16.56,18.78,16.17,31.89,15.75,0,0,0,0,0,0,0,0,33.03,102.64,11.74,42.32,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,4.04666879540912,4.1122578114669,5.24890136299268,4.81203302144212
Merged-chr3-136235764-6,chr3,136235565,136235930,+,849.028748,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033350, intron 5 of 16)","intron (NM_001033350, intron 5 of 16)",90319,NM_001310749,242248,Mm.30832,NM_001033350,ENSMUSG00000037922,Bank1,A530094C12Rik|AI451642|AVIEF|BANK,B cell scaffold protein with ankyrin repeats 1,protein-coding,15.72,5.13,10.77,14.98,9.29,15.16,16.2,7.88,22.14,45.11,95.47,7.61,19.36,39.75,39.89,29.97,48.22,61.58,7.27,19.53,37.77,228.69,188.76,109.07,179.09,113.5,197.16,95.98,99.43,143.14,104.51,Equal basal,3.47133241416918,3.39594284913985,5.15245292019625,4.06686766128657
Merged-chr11-64511067-2,chr11,64510895,64511229,+,849,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_178870, intron 1 of 1)",URR1A|DNA|hAT-Charlie,-74388,NR_028445,654805,Mm.436132,NR_028445,NA,F930015N05Rik,-,RIKEN cDNA F930015N05 gene,ncRNA,0,3.2,0,0.61,0,0,3.04,0,29.52,0,0,0,14.52,0,8.86,0,23.78,26.23,0,1.3,0,579.61,539.32,316.64,482.45,893.83,139.17,61.08,24,14.31,104.51,Equal basal,0.623305465330786,0.404278955363197,4.07427885523336,0.3284610018436
Merged-chr13-37295480-3,chr13,37295295,37295634,+,848.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-49881,NM_010745,17084,Mm.2639,NM_010745,ENSMUSG00000021423,Ly86,MD-1|MD1|ly86_tv2,lymphocyte antigen 86,protein-coding,3.31,8.97,3.7,4.91,0.2,3.54,0,1.26,54.12,4.51,68.19,22.82,0,0,0,0,44.91,57.02,1.12,1.3,0,335.15,238.2,214.61,354.53,354.7,7.73,21.81,13.71,10.74,0,Low basal,2.44639191494586,0.76518898470401,5.04886820530784,0.777831505358059
Merged-chr8-70627197-4,chr8,70626833,70627445,+,847.43335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MERVK26-int|LTR|ERVK,4956,NM_011819,23886,Mm.31325,NM_011819,ENSMUSG00000038508,Gdf15,MIC-1|NAG-1|SBF,growth differentiation factor 15,protein-coding,13.24,15.06,12.45,11.92,10.5,6.07,3.04,5.99,12.3,58.64,27.28,53.26,38.72,0,8.86,67.42,72,72.99,5.03,4.56,27.2,299.66,265.17,147.77,266.81,276.66,131.44,74.17,75.43,110.93,41.81,Equal basal,3.71278078516056,2.55856834079218,5.554315993596,3.14941198178187
Merged-chr16-87755084-4,chr16,87754905,87755231,+,847.208374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,56114,NM_007520,12013,Mm.26147,NM_007520,ENSMUSG00000025612,Bach1,6230421P05Rik|AI323795,"BTB and CNC homology 1, basic leucine zipper transcription factor 1",protein-coding,11.58,9.29,11.11,10.6,18.58,21.73,11.14,12.6,0,0,0,0,0,0,0,0,29.06,45.62,11.74,29.3,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,3.4257056022579,3.78327389479832,4.59103004666724,4.38480074233529
Merged-chr14-47506911-6,chr14,47506677,47507175,+,847.097229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_027414, intron 2 of 5)","intron (NR_027414, intron 2 of 5)",34365,NM_001146085,78938,Mm.11935,NM_030236,ENSMUSG00000037536,Fbxo34,2900057B08Rik|5830426G16Rik,F-box protein 34,protein-coding,14.07,8.97,9.09,10.95,37.97,32.85,30.88,17.64,19.68,36.09,0,0,16.94,0,0,0,48.22,49.04,22.36,78.78,69.51,7.89,94.38,31.66,84.06,163.16,123.71,157.06,17.14,21.47,41.81,Equal basal,3.43273795553314,4.6224669759959,4.9933592220572,5.50917096397403
Merged-chr1-16696775-6,chr1,16696420,16697078,+,847.075012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001159711, intron 2 of 4)","intron (NM_001159711, intron 2 of 4)",8293,NM_001159711,17087,Mm.116844,NM_016923,ENSMUSG00000025779,Ly96,ESOP-1|MD-2|MD2,lymphocyte antigen 96,protein-coding,10.76,19.86,11.78,16.91,3.23,7.08,5.06,5.36,71.34,112.77,127.29,129.34,14.52,26.5,53.19,44.95,33.03,78.69,1.68,11.72,16.62,433.72,332.58,158.32,405.69,262.48,216.49,152.69,109.71,107.35,62.71,Low basal,3.84180287890254,2.35795296837098,5.06100814407582,2.89009190779498
Merged-chr2-90528030-3,chr2,90527916,90528154,+,846.347229,.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008982, intron 1 of 23)","intron (NM_008982, intron 1 of 23)",-48861,NM_001135657,19271,Mm.330393,NM_008982,ENSMUSG00000025314,Ptprj,AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1,"protein tyrosine phosphatase, receptor type, J",protein-coding,5.38,6.09,4.71,3.59,8.68,21.73,11.64,11.34,31.98,58.64,31.82,30.43,65.34,61.83,39.89,108.62,11.89,22.81,7.83,33.86,36.26,106.46,67.42,94.99,73.1,85.13,228.09,196.32,140.57,121.67,125.42,High basal,2.42477493714365,3.49224481449256,3.51893598870708,4.33187062080146
Merged-chr11-89051980-6,chr11,89051837,89052122,+,845.311096,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_019505, intron 3 of 10)",L1MB8|LINE|L1,8769,NM_019505,56077,Mm.153695,NM_019505,ENSMUSG00000000276,Dgke,C87606|DAGK6|DGK,"diacylglycerol kinase, epsilon",protein-coding,0.83,8.33,6.73,5.35,17.37,12.13,21.26,10.71,31.98,9.02,27.28,83.69,108.89,70.66,66.48,93.64,14.53,28.51,15.65,16.93,27.2,559.9,391.01,263.87,226.6,539.14,394.33,239.95,257.14,390.05,376.25,High basal,2.35418754794756,3.7313155713479502,3.80024444332853,4.19667304900863
Merged-chr4-135618181-2,chr4,135617939,135618400,+,845.166687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,L1M|LINE|L1,-8486,NR_015613,73937,Mm.292326,NM_028688,ENSMUSG00000086788,1700029M20Rik,4930406E24Rik,RIKEN cDNA 1700029M20 gene,ncRNA,2.48,4.81,3.37,4.73,19.18,26.28,35.94,14.81,27.06,22.55,0,79.89,38.72,57.41,66.48,71.17,11.89,23.95,19.56,54.69,59.68,23.66,0,7.04,0,7.09,11.6,82.89,20.57,32.21,0,High basal,2.15025650592655,4.29843837772575,3.55161550124893,5.20343817272738
Merged-chr6-97293778-1,chr6,97293656,97293901,+,845,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_145148, intron 22 of 23)","intron (NM_145148, intron 22 of 23)",-40998,NM_001081157,320502,Mm.68163,NM_001081157,ENSMUSG00000044086,Lmod3,5430424A14Rik,leiomodin 3 (fetal),protein-coding,2.48,2.56,0,2.98,10.7,3.03,2.02,3.47,0,0,0,0,0,0,0,0,21.8,36.49,5.59,9.77,12.09,0,0,0,0,0,0,0,0,0,0,Equal basal,1.32757354502291,2.0982202943913,4.24018663501917,3.13824432214721
Merged-chr1-36059039-4,chr1,36058852,36059209,+,843.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Lx7|LINE|L1,-9370,NM_015818,50785,Mm.213566,NM_015818,ENSMUSG00000045216,Hs6st1,6Ost1,heparan sulfate 6-O-sulfotransferase 1,protein-coding,10.34,7.05,13.46,17.96,9.9,13.14,12.15,12.29,0,0,0,0,0,0,0,0,63.41,94.66,6.15,35.81,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.55173464794259,3.41906444834929,5.64807942074607,4.16884049829706
Merged-chr7-132765810-2,chr7,132765670,132765946,+,843.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_001347630, intron 2 of 3)","intron (NM_001347630, intron 2 of 3)",11108,NM_001347630,77938,Mm.225649,NM_175268,ENSMUSG00000030956,Fam53b,A930008G19Rik|mKIAA0140,"family with sequence similarity 53, member B",protein-coding,3.72,2.88,7.4,6.66,4.85,6.07,4.05,3.15,0,0,0,0,0,0,0,0,22.46,51.32,2.79,9.11,12.09,0,0,0,0,0,0,0,0,0,0,Equal basal,2.41659081382044,2.22254647407323,4.49652640943519,2.82798804177249
Merged-chr2-128743543-6,chr2,128743393,128743752,+,843.388916,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008587, intron 4 of 18)","intron (NM_008587, intron 4 of 18)",44657,NM_008587,17289,Mm.239655,NM_008587,ENSMUSG00000014361,Mertk,Eyk|Mer|Nyk|nmf12,c-mer proto-oncogene tyrosine kinase,protein-coding,17.79,11.53,7.07,17,12.12,22.74,12.15,21.11,7.38,13.53,36.37,45.65,16.94,26.5,31.03,29.97,59.45,70.71,10.06,34.51,24.93,118.29,125.84,28.15,95.03,56.75,108.25,139.61,24,164.61,0,Equal basal,3.65091874366947,3.85609155389837,5.3966697512448,4.28053253593481
Merged-chr18-50081263-6,chr18,50081064,50081606,+,842.850769,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_134131, intron 1 of 1)",Lx7|LINE|L1,-27673,NR_155293,102635912,Mm.440627,NR_155293,NA,C030005K06Rik,-,RIKEN cDNA C030005K06 gene,ncRNA,22.34,17.3,10.43,8.5,20.19,29.82,13.67,12.92,19.68,0,68.19,0,14.52,0,26.59,22.47,45.57,68.43,19,38.41,37.77,216.86,197.75,130.18,255.84,92.22,189.43,231.22,157.71,264.8,174.19,Equal basal,3.76958521003043,3.9762082213439,5.18691843801518,4.81149401277227
Merged-chr1-153401969-4,chr1,153401817,153402111,+,842.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,12269,NR_033736,626058,Mm.31556,NM_001177359,NA,E330020D12Rik,EG626058|F430003O07Rik|Gm6648,Riken cDNA E330020D12 gene,ncRNA,8.27,8.33,2.69,8.15,16.36,11.62,27.84,13.23,0,0,0,0,0,0,0,0,22.46,35.35,12.3,30.6,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,2.78654176745525,3.83486126700763,4.23864550407895,4.41484714166508
Merged-chr2-170164381-6,chr2,170164170,170164538,+,841.944458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-21679,NM_001159683,228913,Mm.22858,NM_001033299,ENSMUSG00000052056,Zfp217,4933431C08Rik|AW987152|Gm562|ZABC1|Znf217,zinc finger protein 217,protein-coding,7.45,8.65,6.06,13.32,25.85,27.29,23.79,16.38,19.68,13.53,0,3.8,9.68,39.75,26.59,0,21.8,52.46,30.18,29.3,36.26,74.92,35.95,112.58,76.75,106.41,100.51,87.25,75.43,89.46,181.16,Equal basal,3.15309924303701,4.31433233887736,4.49158109563698,4.8832149766475
Merged-chr1-156860336-2,chr1,156860208,156860465,+,841.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_028333, intron 4 of 4)","intron (NM_028333, intron 4 of 4)",21313,NM_028333,72713,Mm.389206,NM_028333,ENSMUSG00000033544,Angptl1,2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1,angiopoietin-like 1,protein-coding,2.07,3.2,4.71,5.17,9.09,2.02,3.54,4.41,0,0,0,0,2.42,0,0,0,27.74,43.34,3.91,11.07,12.09,0,0,0,0,0,0,0,0,0,0,Equal basal,2.08221231301171,2.13597492724944,4.52346864164016,3.04313562365809
Merged-chr4-127041441-4,chr4,127041266,127041646,+,839.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,19698,NM_026670,68310,Mm.273806,NM_026670,ENSMUSG00000043872,Zmym1,5830412B09Rik|AW209050,"zinc finger, MYM domain containing 1",protein-coding,11.17,8.33,4.38,6.31,20.8,13.65,21.26,7.25,0,0,0,0,0,0,0,0,35.01,53.6,4.47,34.51,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,2.90716769412944,3.67342622834734,4.83193716841018,4.296421444821
Merged-chr2-127454042-6,chr2,127453862,127454215,+,839.305542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-9473,NM_029629,68126,Mm.288676,NM_029629,ENSMUSG00000027371,Fahd2a,1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2,fumarylacetoacetate hydrolase domain containing 2A,protein-coding,7.45,16.66,6.73,9.64,8.89,26.28,15.19,12.29,41.82,58.64,72.74,34.24,38.72,57.41,0,22.47,26.42,43.34,12.3,30.6,18.13,256.29,391.01,144.25,138.89,489.48,255.15,418.82,147.43,271.96,292.64,Equal basal,3.30650290422552,3.69867460845386,4.48998308299495,4.17226471073726
Merged-chr6-140614878-4,chr6,140614677,140615043,+,838.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-7803,NM_178803,11569,Mm.86453,NM_009637,ENSMUSG00000030232,Aebp2,AU023766|B230313N05Rik,AE binding protein 2,protein-coding,13.65,17.62,10.1,15.86,27.67,21.73,19.74,11.97,0,0,0,0,0,0,0,0,47.56,46.76,11.74,21.49,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.80009628028519,4.07828960605491,4.95057599016176,4.18504383656772
Merged-chr4-10977806-6,chr4,10977619,10978031,+,838.666687,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,29794,NM_175175,71801,Mm.34351,NM_175175,ENSMUSG00000049969,Plekhf2,1110070J07Rik|AA673237|ZFYVE18,"pleckstrin homology domain containing, family F (with FYVE domain) member 2",protein-coding,7.86,2.56,9.09,7.89,11.31,10.61,4.56,10.4,110.7,31.57,150.02,95.1,75.01,30.91,84.21,101.13,27.74,27.37,6.15,16.93,29.46,496.81,516.85,299.05,519,588.8,402.06,453.72,305.14,536.76,466.83,Equal basal,2.76172816896049,2.99987997030058,4.20856265647048,3.81574173606767
Merged-chr18-9508546-4,chr18,9508290,9508759,+,838.666626,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-58370,NM_026484,67974,Mm.86523,NM_026484,ENSMUSG00000024286,Ccny,1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik,cyclin Y,protein-coding,17.79,7.69,7.74,24.97,18.17,11.12,15.19,11.34,0,0,0,0,0,0,0,0,72,109.48,10.62,30.6,41.55,0,0,0,0,0,0,0,0,0,0,Equal basal,3.68190269870624,3.62504306539898,5.84099102197376,4.48432716509202
Merged-chr2-103013471-3,chr2,103013255,103013685,+,838.333313,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,60043,NM_175094,27402,Mm.315011,NM_175094,ENSMUSG00000010914,Pdhx,AI481367|E3bp|Pdx1,"pyruvate dehydrogenase complex, component X",protein-coding,2.48,0,2.69,1.58,2.02,2.02,3.04,5.99,2.46,0,0,0,2.42,13.25,0,0,19.82,33.07,1.12,7.81,12.84,197.15,274.16,91.48,285.08,14.19,173.97,191.96,109.71,200.39,0,Equal basal,1.23534247139049,1.8083034350655,4.10820918532571,2.47868349278701
Merged-chr5-86114129-3,chr5,86113964,86114336,+,838.166687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172712, intron 32 of 32)","intron (NM_172712, intron 32 of 32)",42404,NM_001310639,56792,Mm.131237,NM_019992,ENSMUSG00000029254,Stap1,AI586015|Brdg1|STAP-1,signal transducing adaptor family member 1,protein-coding,3.31,1.92,0,2.1,5.86,7.58,11.14,3.47,2.46,18.04,4.55,22.82,24.2,26.5,39.89,0,21.14,33.07,3.35,5.21,6.8,51.26,215.73,21.11,149.85,170.25,135.31,178.87,41.14,93.04,41.81,Equal basal,1.24566814516635,2.61193638005854,4.15181917296241,2.43528997053969
Merged-chr19-34340562-4,chr19,34340399,34340776,+,837.645813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MLT1F|LTR|ERVL-MaLR,49928,NM_001146708,14102,Mm.1626,NM_007987,ENSMUSG00000024778,Fas,AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr,Fas (TNF receptor superfamily member 6),protein-coding,7.86,16.66,10.77,9.55,18.78,14.15,24.3,11.34,31.98,22.55,54.55,45.65,43.56,26.5,31.03,44.95,28.4,54.74,5.03,22.79,38.53,98.57,224.72,35.18,190.06,248.29,301.54,375.19,150.85,311.32,445.93,Equal basal,3.45273459202589,3.86917227593573,4.70214975561822,3.98790673198636
Merged-chr5-43113585-7,chr5,43113379,43113765,+,837.56189,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-119891,NM_175937,231207,Mm.7233,NM_175937,ENSMUSG00000039782,Cpeb2,A630055H10Rik|Cpe-bp2,cytoplasmic polyadenylation element binding protein 2,protein-coding,14.89,8.65,18.51,24.62,17.97,15.67,20.25,17.01,46.74,40.6,0,95.1,21.78,101.58,26.59,71.17,51.52,75.27,10.06,31.9,43.82,157.72,103.37,77.4,208.33,42.56,201.03,205.05,106.28,207.55,160.26,Equal basal,3.94861453485831,3.95266413312637,5.33997428360649,4.50395309523239
Merged-chr18-52559084-6,chr18,52558957,52559247,+,837.133301,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-29235,NM_001286182,16948,Mm.172,NM_010728,ENSMUSG00000024529,Lox,AI893619|TSC-160|rrg,lysyl oxidase,protein-coding,6.62,12.49,5.38,13.41,11.11,21.23,20.25,9.77,14.76,0,4.55,15.22,12.1,0,26.59,7.49,27.74,41.06,11.18,42.97,27.2,201.09,197.75,56.29,186.4,290.85,146.91,226.86,72,178.92,202.06,Equal basal,3.20269323246975,3.70785674372603,4.48606261590021,4.46957330203075
Merged-chr8-25083318-4,chr8,25083164,25083487,+,836.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_031257, intron 2 of 11)","intron (NM_031257, intron 2 of 11)",18486,NM_031257,83436,Mm.261122,NM_031257,ENSMUSG00000031557,Plekha2,6430512N22Rik|AI851530|AU041791|TAPP2|W91773,"pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2",protein-coding,14.07,8.33,10.43,10.95,13.53,12.64,19.24,8.19,0,0,0,0,0,0,0,0,41.61,59.3,8.94,22.79,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,3.45600610686645,3.52163092737026,5.02292618505627,4.14774030288054
Merged-chr1-173429824-3,chr1,173429682,173429967,+,836.555542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001013779, intron 2 of 8)","intron (NM_001013779, intron 2 of 8)",9220,NM_001013779,383619,Mm.131453,NM_001013779,ENSMUSG00000037860,Aim2,Gm1313|Ifi210,absent in melanoma 2,protein-coding,4.55,2.24,2.36,4.03,22.62,15.67,15.19,16.07,0,0,0,0,2.42,0,22.16,0,16.51,25.09,9.5,33.2,40.04,0,0,0,0,0,0,0,0,0,0,High basal,1.88774493902544,3.91232838636479,3.79850287186694,4.45493531207438
Merged-chr17-67342238-4,chr17,67342083,67342427,+,836.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357625, intron 1 of 32)",RMER15|LTR|ERVL,12204,NM_008984,19274,Mm.311809,NM_008984,ENSMUSG00000033278,Ptprm,RPTPmu|mKIAA4044,"protein tyrosine phosphatase, receptor type, M",protein-coding,8.27,20.82,5.38,11.57,13.13,20.22,7.59,11.03,0,0,0,0,0,0,0,0,39.63,75.27,8.38,27.34,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.40065658851477,3.45185038491333,5.15634847572317,4.2237559019506
Merged-chr8-125620484-3,chr8,125620263,125620647,+,835.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,35817,NR_015535,75930,Mm.195663,NR_015535,ENSMUSG00000110629,4930567H12Rik,4930579P07Rik,RIKEN cDNA 4930567H12 gene,ncRNA,10.34,9.29,10.1,16.91,13.33,8.09,18.73,10.71,0,0,0,0,0,0,0,0,50.2,66.15,12.86,25.39,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,3.51111720525567,3.46136279687345,5.23084437162076,4.0879121306721
Merged-chr18-53153266-4,chr18,53153068,53153497,+,834.305542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Lx7|LINE|L1,-23010,NM_001357463,67804,Mm.252171,NM_026386,ENSMUSG00000034484,Snx2,0610030A03Rik,sorting nexin 2,protein-coding,3.72,5.13,0,1.58,13.93,13.14,18.73,10.71,14.76,22.55,27.28,0,29.04,22.08,26.59,3.75,12.55,44.48,5.03,25.39,51.37,177.43,76.4,21.11,36.55,127.69,162.37,292.3,192,96.62,167.22,High basal,1.43641399881992,3.62782988055348,4.00955505596216,4.17120118701236
Merged-chr1-150015647-3,chr1,150015335,150015847,+,833.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-54301,NM_008869,18783,Mm.4186,NM_008869,ENSMUSG00000056220,Pla2g4a,Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha,"phospholipase A2, group IVA (cytosolic, calcium-dependent)",protein-coding,9.93,21.78,6.73,12.53,17.17,15.16,16.7,14.49,0,0,0,0,0,0,0,0,47.56,67.29,6.71,33.2,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.57352644961901,3.8079853379269,5.20492309088431,4.20472965578701
Merged-chr17-50513014-4,chr17,50512859,50513184,+,833.479187,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013880, intron 1 of 5)","intron (NM_013880, intron 1 of 5)",3474,NM_013880,224860,Mm.217362,NM_013880,ENSMUSG00000038910,Plcl2,PLC-L2|PRIP-2|Plce2|mKIAA1092,phospholipase C-like 2,protein-coding,8.69,12.17,5.72,10.87,25.65,21.73,13.16,11.34,0,0,0,0,0,0,0,0,28.4,54.74,9.5,30.6,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.20505869939581,3.90870863391884,4.70214975561822,4.4428089091339
Merged-chr7-125577682-4,chr7,125577093,125577981,+,833.200012,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"3' UTR (NM_001008700, exon 11 of 11)","3' UTR (NM_001008700, exon 11 of 11)",25255,NM_001008700,16190,Mm.233802,NM_010557,ENSMUSG00000030748,Il4ra,CD124|Il4r,"interleukin 4 receptor, alpha",protein-coding,4.14,4.16,5.72,6.13,2.42,10.61,8.1,11.66,103.32,18.04,95.47,136.95,87.11,145.74,35.46,63.68,27.74,28.51,5.59,14.97,24.18,130.12,148.31,309.61,471.48,411.45,139.17,104.7,109.71,490.24,480.77,Equal basal,2.45980733424591,2.79767205524986,4.23622808798793,3.63028575163309
Merged-chr17-12999284-3,chr17,12999110,12999492,+,831.388916,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,RMER16_Mm|LTR|ERVK,-6762,NM_175394,60532,Mm.275521,NM_175394,ENSMUSG00000060475,Wtap,2810408K05Rik|9430038B09Rik,Wilms tumour 1-associating protein,protein-coding,4.14,5.13,5.05,4.64,23.02,21.73,23.28,13.86,0,0,0,0,0,0,0,0,23.78,30.79,20.12,35.16,31.73,0,0,0,0,0,0,0,0,0,0,High basal,2.41202873723241,4.13157211331421,4.1830510136928,4.71641922565867
Merged-chr3-88740049-4,chr3,88739877,88740202,+,830.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,B1_Mus1|SINE|Alu,23185,NR_028056,19769,Mm.4009,NM_009069,ENSMUSG00000028057,Rit1,RIBB|ROC1|Rit,Ras-like without CAAX 1,protein-coding,4.14,7.05,6.39,7.62,28.68,19.21,4.56,9.45,24.6,0,27.28,22.82,7.26,26.5,26.59,22.47,58.79,57.02,11.74,44.27,37.02,19.71,17.98,17.59,54.82,0,46.39,56.71,61.71,64.41,13.94,Equal basal,2.73877944656496,3.50373198000731,5.23790588476382,4.64735646176744
Merged-chr5-66016328-4,chr5,66016155,66016462,+,830.270813,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_001127382),TTS (NM_001127382),-12023,NR_027961,231253,Mm.436542,NM_177679,ENSMUSG00000054598,9130230L23Rik,-,RIKEN cDNA 9130230L23 gene,ncRNA,11.58,13.13,3.7,8.5,20.8,12.64,16.2,11.97,0,0,0,0,0,0,0,0,37.65,46.76,7.83,24.09,34,0,0,0,0,0,0,0,0,0,0,Equal basal,3.1095539395027,3.73513012160228,4.7873981030503,4.14570682669757
Merged-chr16-35754102-8,chr16,35753664,35754369,+,829.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153550, intron 1 of 8)",RLTR20A1|LTR|ERVK,15340,NM_153550,224132,Mm.24094,NM_153550,ENSMUSG00000022848,Dirc2,RCC4,disrupted in renal carcinoma 2 (human),protein-coding,4.14,9.61,8.08,13.49,13.33,13.14,18.73,8.19,95.94,162.38,13.64,148.36,94.37,119.24,13.3,108.62,31.04,57.02,10.62,23.44,29.46,496.81,719.1,320.16,551.89,397.26,502.57,711.12,370.28,576.12,508.64,Equal basal,3.11809583572018,3.52990113340726,4.79198654657748,4.20344893512324
Merged-chr17-34258238-6,chr17,34258069,34258506,+,827.763916,.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4940,NM_207105,14961,Mm.254067,NM_207105,ENSMUSG00000073421,H2-Ab1,AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1,"histocompatibility 2, class II antigen A, beta 1",protein-coding,13.24,16.98,0.67,6.48,21.41,22.74,26.83,12.92,137.76,139.83,59.1,148.36,79.85,242.9,53.19,89.9,29.72,43.34,9.5,37.11,10.58,622.98,440.45,197.02,303.36,397.26,456.18,301.03,195.43,218.28,515.6,Equal basal,2.80807906117757,4.13227702497254,4.57095135394718,3.91081592155921
Merged-chr10-14197431-7,chr10,14197213,14197600,+,827.580933,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,231027,NM_010437,15273,Mm.42157,NM_010437,ENSMUSG00000015501,Hivep2,Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2,human immunodeficiency virus type I enhancer binding protein 2,protein-coding,8.27,7.05,8.08,8.24,17.77,31.84,30.88,9.77,56.58,54.13,31.82,102.71,91.95,53,57.62,93.64,23.12,31.93,12.86,41.67,48.35,358.81,269.66,249.8,281.43,177.35,398.19,444.99,339.42,415.1,557.41,High basal,3.06777733820206,4.14099339177233,4.18867142941723,4.78456957999672
Merged-chr19-43959394-7,chr19,43959039,43959636,+,827.242859,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_030703, intron 8 of 8)","intron (NM_030703, intron 8 of 8)",-19139,NM_028029,71972,Mm.159024,NM_028029,ENSMUSG00000025195,Dnmbp,2410003L07Rik|2410003M15Rik|TUBA,dynamin binding protein,protein-coding,24.41,23.71,14.47,13.41,18.98,13.65,24.3,9.14,83.64,63.15,127.29,87.5,72.6,105.99,26.59,78.66,49.54,92.38,12.3,23.44,15.87,504.7,453.93,267.39,420.31,361.79,197.16,200.68,102.86,193.23,146.32,Equal basal,4.1646292198592,3.76885586025384,5.45703926702524,3.99094989249507
Merged-chr4-58504814-4,chr4,58504656,58504975,+,826.900024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010336, intron 1 of 3)","intron (NM_010336, intron 1 of 3)",-5412,NM_001290486,14745,Mm.4772,NM_010336,ENSMUSG00000038668,Lpar1,AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1,lysophosphatidic acid receptor 1,protein-coding,10.34,12.49,15.48,9.29,30.9,13.65,20.25,16.07,0,0,0,0,0,0,0,0,30.38,62.72,11.18,37.11,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.55571919788315,4.06543800692275,4.84388469585287,4.44957993065953
Merged-chr13-97486080-6,chr13,97485954,97486215,+,825.905579,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_110430, intron 2 of 2)","intron (NR_110430, intron 2 of 2)",3383,NR_110431,100039691,Mm.219358,NR_110430,ENSMUSG00000078952,Lncenc1,Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1,"long non-coding RNA, embryonic stem cells expressed 1",ncRNA,22.34,10.25,10.43,9.9,12.72,11.12,15.19,11.97,9.84,27.06,0,3.8,36.3,26.5,44.32,22.47,44.91,54.74,4.47,35.81,30.98,134.06,98.88,56.29,149.85,28.38,139.17,143.97,99.43,139.56,181.16,Equal basal,3.64605491958163,3.51943238518723,5.02033985330783,4.04564995494741
Merged-chr16-37994833-8,chr16,37994677,37994994,+,825.841675,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153394, intron 8 of 9)","intron (NM_153394, intron 8 of 9)",-22488,NR_040565,75175,Mm.399335,NR_040565,NA,4930542C21Rik,-,RIKEN cDNA 4930542C21 gene,ncRNA,14.48,13.13,8.08,14.9,10.9,11.62,19.74,9.77,113.16,180.43,109.11,41.85,87.11,88.33,106.37,63.68,30.38,53.6,7.27,17.58,22.66,193.2,148.31,87.96,219.29,212.82,131.44,196.32,96,196.81,125.42,Equal basal,3.62793434723542,3.4746234201735,4.73391389367991,3.7856057489808
Merged-chr13-112810529-5,chr13,112810332,112810677,+,825.780029,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_008903, intron 1 of 5)",MIR|SINE|MIR,9727,NM_008247,19012,Mm.291029,NM_008247,ENSMUSG00000021759,Plpp1,Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP,phospholipid phosphatase 1,protein-coding,9.52,8.33,12.79,6.13,25.44,18.2,28.35,24.89,27.06,18.04,27.28,7.61,84.69,0,26.59,0,37.65,29.65,20.12,52.74,65.73,110.4,184.27,70.37,80.41,113.5,119.84,170.14,51.43,60.83,69.68,High basal,3.20917272678172,4.37715164696294,4.47409520527828,5.24478342128804
Merged-chr15-72549513-4,chr15,72549320,72549687,+,825.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3224,NM_001033876,223604,Mm.386856,NM_001033876,ENSMUSG00000036760,Kcnk9,Task3,"potassium channel, subfamily K, member 9",protein-coding,10.76,12.49,9.09,12.62,15.15,16.68,17.21,12.6,0,0,0,0,0,0,0,0,26.42,53.6,10.06,24.74,33.24,0,0,0,0,0,0,0,0,0,0,Equal basal,3.49261074349311,3.76023453025075,4.63778810481447,4.25923754904493
Merged-chr2-146416370-4,chr2,146416110,146416687,+,825.527771,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001033348, intron 16 of 40)","intron (NM_001033348, intron 16 of 40)",95606,NM_001033348,241694,Mm.222310,NM_001033348,ENSMUSG00000037110,Ralgapa2,A230067G21Rik|AS250|BC053994|RGC2|pp250,"Ral GTPase activating protein, alpha subunit 2 (catalytic)",protein-coding,3.31,0.64,4.04,3.07,16.76,2.53,9.11,16.38,56.58,63.15,63.65,19.02,38.72,30.91,66.48,26.22,50.2,52.46,5.59,3.26,21.15,835.9,498.87,499.6,624.99,681.02,154.64,122.16,106.28,168.19,236.9,High basal,1.73545890719534,3.0711260575499,5.0685992791879,2.95979056322652
Merged-chr1-191124030-7,chr1,191123801,191124431,+,825.392883,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,25702,NM_030060,381319,Mm.6922,NM_030060,ENSMUSG00000026630,Batf3,9130211I03Rik|Snft,"basic leucine zipper transcription factor, ATF-like 3",protein-coding,32.27,29.47,15.82,18.14,34.13,19.21,28.35,23.32,41.82,54.13,27.28,0,9.68,26.5,0,22.47,75.3,119.75,15.09,51.43,61.95,161.66,148.31,56.29,237.57,127.69,150.77,161.42,65.14,125.24,83.61,Equal basal,4.47605589350358,4.47652796609066,5.9363893301064,5.07240956898526
Merged-chr5-99297383-6,chr5,99297197,99297567,+,824.569458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"non-coding (NR_030692, exon 4 of 4)","non-coding (NR_030692, exon 4 of 4)",-44455,NM_145839,320292,Mm.259074,NM_145839,ENSMUSG00000089809,Rasgef1b,4732452O09Rik|GPIgamma4|Gpig4,"RasGEF domain family, member 1B",protein-coding,13.24,17.62,12.12,24.8,14.94,15.16,13.16,10.08,17.22,4.51,4.55,19.02,26.62,39.75,62.05,0,40.95,71.85,10.06,28.65,40.04,110.4,94.38,31.66,105.99,99.31,96.65,87.25,72,93.04,125.42,Equal basal,4.01431110373202,3.5760733899413,5.14646111817481,4.41246670968225
Merged-chr7-101571067-6,chr7,101570905,101571301,+,824.31665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR11D|LTR|ERVK,10058,NM_019915,11872,Mm.57008,NM_019915,ENSMUSG00000030651,Art2b,ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2,ADP-ribosyltransferase 2b,protein-coding,14.07,20.18,10.43,10.08,21.2,15.67,16.2,17.96,24.6,0,0,22.82,12.1,26.5,26.59,33.71,72.66,83.25,14.53,31.9,49.86,51.26,103.37,21.11,105.99,127.69,170.1,148.33,68.57,135.98,222.96,Equal basal,3.71519364534761,3.9471320666911,5.65355041236619,4.73103805391892
Merged-chr7-67369821-4,chr7,67369657,67369984,+,824.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001357324, intron 1 of 11)","intron (NM_001357324, intron 1 of 11)",3038,NM_001291192,17258,Mm.132788,NM_001033713,ENSMUSG00000030557,Mef2a,A430079H05Rik,myocyte enhancer factor 2A,protein-coding,8.27,25.63,7.4,7.1,18.98,18.2,30.37,5.99,0,0,0,0,0,0,0,0,40.95,88.95,15.09,32.55,23.42,0,0,0,0,0,0,0,0,0,0,Equal basal,3.41517651951372,3.81309126425538,5.29712632268016,4.40932658627793
Merged-chr7-100780488-2,chr7,100780316,100780626,+,821.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_178764, intron 2 of 8)","intron (NM_178764, intron 2 of 8)",73836,NM_001362170,319604,Mm.260362,NM_178764,ENSMUSG00000029461,Fam168a,2610030B18Rik|B930006L02Rik|mKIAA0280,"family with sequence similarity 168, member A",protein-coding,5.79,5.77,7.07,12.09,8.48,7.58,12.15,5.36,0,0,0,0,0,0,0,0,36.99,35.35,6.15,13.67,11.33,0,0,0,0,0,0,0,0,0,0,Equal basal,2.96301771211352,2.90046022996843,4.58197697227777,3.29648207620388
Merged-chr7-101066707-6,chr7,101066528,101066885,+,820.6875,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-42069,NM_001146010,207278,Mm.263041,NM_199012,ENSMUSG00000030691,Fchsd2,BC034086|R74866|Sh3md3|mKIAA0769,FCH and double SH3 domains 2,protein-coding,12,9.61,4.71,3.94,67.45,52.06,70.87,55.14,0,27.06,0,15.22,55.66,97.16,62.05,101.13,35.67,35.35,30.74,80.08,65.73,0,17.98,0,18.27,0,150.77,122.16,41.14,157.45,153.29,High basal,2.87627827482015,5.68028973281813,4.55670466047179,5.63963153014934
Merged-chr7-75786171-3,chr7,75785975,75786386,+,820.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,RLTR13D3|LTR|ERVK,-62158,NM_001122780,207952,Mm.206223,NM_029652,ENSMUSG00000055652,Klhl25,2810402K13Rik|BC027373|Enc-1,kelch-like 25,protein-coding,15.72,14.74,10.1,14.72,15.15,12.13,13.67,7.88,0,0,0,0,0,0,0,0,31.7,69.57,6.15,18.23,15.11,0,0,0,0,0,0,0,0,0,0,Equal basal,3.78044576800537,3.40830332980151,4.94598465092884,3.54861183772122
Merged-chr2-26493513-4,chr2,26493309,26493748,+,820.208313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008714, intron 2 of 33)","intron (NM_008714, intron 2 of 33)",10294,NM_008714,18128,Mm.290610,NM_008714,ENSMUSG00000026923,Notch1,9930111A19Rik|Mis6|N1|Tan1|lin-12,notch 1,protein-coding,13.24,25.31,18.85,12.53,29.69,22.24,22.78,17.01,0,0,0,0,0,0,0,0,78.6,78.69,15.65,48.83,72.53,0,0,0,0,0,0,0,0,0,0,Equal basal,4.05631628063035,4.28707969633574,5.66949437252625,5.13897322536539
Merged-chr6-54960053-4,chr6,54959726,54960264,+,819.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172729, intron 1 of 11)","intron (NM_172729, intron 1 of 11)",11666,NM_001171007,107607,Mm.28498,NM_172729,ENSMUSG00000038058,Nod1,C230079P11|Card4|F830007N14Rik|Nlrc1,nucleotide-binding oligomerization domain containing 1,protein-coding,9.93,10.89,6.06,12.97,26.45,23.25,8.1,14.81,0,0,0,0,0,0,0,0,36.33,58.16,7.83,20.83,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32217536214133,3.87989750860713,4.9147391593552,3.98988890177715
Merged-chr4-59265362-1,chr4,59265179,59265545,+,818,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NR_105031, intron 3 of 3)","intron (NR_105031, intron 3 of 3)",5311,NR_105031,101055769,Mm.421401,NR_105031,NA,Gm12596,-,predicted gene 12596,ncRNA,6.62,4.81,4.71,5.35,12.72,9.6,9.62,5.99,0,0,0,0,0,0,0,0,25.76,35.35,3.35,6.51,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.55538978625269,3.0491262188256,4.33223513965069,2.60356765422721
Merged-chr17-43266077-6,chr17,43265842,43266251,+,817.902771,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-4301,NM_133776,77596,Mm.159950,NM_133776,ENSMUSG00000041293,Adgrf1,5031409J19Rik|Gpr110|KPG_009,adhesion G protein-coupled receptor F1,protein-coding,11.58,16.02,8.08,11.92,21.41,15.67,22.78,3.78,22.14,54.13,40.92,38.04,48.4,26.5,48.75,0,31.04,72.99,16.21,31.25,34,224.75,161.8,87.96,95.03,0,131.44,165.78,41.14,114.51,41.81,Equal basal,3.56334054068717,3.56465903984278,4.96521708435926,4.59377121792956
Merged-chr13-89488346-6,chr13,89488156,89488527,+,817.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-52295,NM_013500,12950,Mm.266790,NM_013500,ENSMUSG00000021613,Hapln1,BB099155|CLP|Crtl1|Crtl1l|LP|LP-1,hyaluronan and proteoglycan link protein 1,protein-coding,7.86,7.69,4.71,12.09,55.33,56.1,72.89,28.04,36.9,18.04,100.02,7.61,33.88,13.25,97.51,29.97,53.5,57.02,50.86,71.62,109.55,118.29,67.42,49.26,29.24,0,69.59,100.34,75.43,28.63,0,High basal,3.01891449567396,5.40683138920174,5.17159837015526,6.06609197239086
Merged-chr18-38434207-4,chr18,38434076,38434339,+,817.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001355749, intron 1 of 7)",RMER6A|LTR|ERVK,15300,NM_001355749,65113,Mm.102496,NM_022996,ENSMUSG00000024425,Ndfip1,0610010M22Rik|N4wbp5,Nedd4 family interacting protein 1,protein-coding,12.41,5.45,2.02,10.69,8.68,12.13,17.21,12.6,0,0,0,0,0,0,0,0,37.65,46.76,10.06,24.09,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,2.78781295225145,3.4818118903012,4.7873981030503,4.16752403238815
Merged-chr10-60341386-4,chr10,60341226,60341565,+,817.06665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001252635, intron 37 of 68)",MTEb|LTR|ERVL-MaLR,-5456,NM_001159572,74048,Mm.273584,NM_028732,ENSMUSG00000020101,Vsir,4632428N05Rik|Dies1|PD-1H|VISTA,V-set immunoregulatory receptor,protein-coding,9.52,11.85,9.42,11.65,12.72,13.14,12.15,14.81,0,0,0,0,0,0,0,0,30.38,53.6,13.41,29.3,27.95,0,0,0,0,0,0,0,0,0,0,Equal basal,3.41600481070856,3.56601573327585,4.73391389367991,4.38738188036928
Merged-chr10-120191418-2,chr10,120191225,120191573,+,816.791626,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001359184, intron 1 of 11)","intron (NM_001359184, intron 1 of 11)",10198,NM_028679,73914,Mm.146194,NM_028679,ENSMUSG00000020227,Irak3,4833428C18Rik|AI563835|IRAK-M,interleukin-1 receptor-associated kinase 3,protein-coding,0,4.49,0.67,1.93,13.93,12.64,25.31,12.29,0,0,0,0,0,0,0,0,15.19,26.23,17.33,28.65,38.53,0,0,0,0,0,0,0,0,0,0,High basal,1.13743008205928,3.74945661362569,3.7731469322752,4.6423309771678
Merged-chr5-121409102-4,chr5,121408886,121409250,+,816.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_172722, intron 3 of 23)","intron (NM_172722, intron 3 of 23)",11086,NM_172722,231713,Mm.33919,NM_172722,ENSMUSG00000042719,Naa25,4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20,"N(alpha)-acetyltransferase 25, NatB auxiliary subunit",protein-coding,10.34,8.65,6.73,7.89,8.89,18.2,8.1,16.38,0,0,0,0,0,0,0,0,35.67,41.06,10.06,27.34,30.98,0,0,0,0,0,0,0,0,0,0,Equal basal,3.10655712563368,3.47925055872361,4.65970225300399,4.27253085902212
Merged-chr10-118178964-5,chr10,118178668,118179150,+,816.06665,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-26055,NM_016971,50929,Mm.103585,NM_016971,ENSMUSG00000074695,Il22,IL-22|IL-22a|ILTIFa|Iltif,interleukin 22,protein-coding,16.55,7.05,15.14,20.68,4.04,13.14,11.64,12.29,0,22.55,40.92,0,4.84,26.5,0,0,62.09,53.6,10.06,20.18,12.09,145.89,112.36,84.44,146.2,56.75,108.25,91.62,61.71,85.88,216,Equal basal,3.80311782369077,3.13076024581221,5.23322484539584,3.71419277287447
Merged-chr3-59224962-6,chr3,59224763,59225166,+,816.022217,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001357010, intron 1 of 3)","intron (NM_001357010, intron 1 of 3)",-14082,NM_028808,74191,Mm.90067,NM_028808,ENSMUSG00000036362,P2ry13,2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174,"purinergic receptor P2Y, G-protein coupled 13",protein-coding,12.82,4.49,1.35,5.61,22.82,18.2,11.64,13.23,93.48,49.62,40.92,49.45,116.15,48.58,119.67,108.62,19.15,25.09,14.53,22.14,26.44,181.38,193.26,94.99,127.92,163.16,247.42,327.2,85.71,214.7,167.22,High basal,2.45209822658207,3.81402852076644,3.89784170396991,4.27051089512424
Merged-chr11-74523755-4,chr11,74523620,74523930,+,815.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001015046, intron 2 of 24)","intron (NM_001015046, intron 2 of 24)",66383,NM_001015046,380711,Mm.425690,NM_001015046,ENSMUSG00000038807,Rap1gap2,AU067654|Garnl4|Gm1561|mKIAA1039,RAP1 GTPase activating protein 2,protein-coding,4.96,9.29,4.71,6.75,15.75,8.09,15.69,6.93,0,0,0,0,0,0,0,0,34.35,26.23,10.06,26.69,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,2.7517276645093,3.3144112021661,4.32724339183119,4.20191106520525
Merged-chr16-3722668-2,chr16,3722494,3722798,+,815,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,ID_B1|SINE|B4,-4522,NM_001161791,54483,Mm.143718,NM_019453,ENSMUSG00000022534,Mefv,FMF|TRIM20|pyrin,Mediterranean fever,protein-coding,3.31,6.09,2.02,1.93,8.89,11.12,2.53,2.52,0,0,0,0,0,0,0,0,17.17,35.35,3.35,13.67,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,1.92461180025641,2.36943592628191,4.05788467858104,3.23167929082529
Merged-chr2-153164702-5,chr2,153164377,153165076,+,814.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_133847, intron 1 of 17)","intron (NM_133847, intron 1 of 17)",3425,NM_133847,99237,Mm.330674,NM_133847,ENSMUSG00000068040,Tm9sf4,AA986553|AU045326|B930079E06|mKIAA0255,transmembrane 9 superfamily protein member 4,protein-coding,24.82,29.15,21.54,25.15,17.57,24.77,28.35,23.95,0,0,0,0,0,0,0,0,85.21,99.22,14.53,45.57,43.82,0,0,0,0,0,0,0,0,0,0,Equal basal,4.6033089475678,4.33655583050075,5.89059917164792,4.83648491000013
Merged-chr8-120332847-4,chr8,120332679,120332988,+,814.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-104603,NR_110496,434353,Mm.411793,NR_110496,ENSMUSG00000097960,A330074K22Rik,-,RIKEN cDNA A330074K22 gene,ncRNA,12.41,12.17,12.79,21.82,11.51,15.16,5.57,8.82,0,0,0,0,0,0,0,0,58.79,94.66,8.38,30.6,16.62,0,0,0,0,0,0,0,0,0,0,Equal basal,3.84939125027696,3.1499361734256,5.59467376474274,3.96176318494341
Merged-chr1-133118346-6,chr1,133118188,133118525,+,813.216675,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1B1|LTR|ERVL-MaLR,-12810,NM_133819,108954,Mm.293628,NM_133819,ENSMUSG00000046062,Ppp1r15b,1810033K10Rik|AI606441|C530022L24Rik|CReP,"protein phosphatase 1, regulatory (inhibitor) subunit 15b",protein-coding,6.62,8.97,8.75,3.77,12.52,12.64,33.92,11.03,39.36,54.13,63.65,60.87,77.43,185.49,101.94,48.69,18.49,42.2,8.94,41.67,30.22,374.58,422.47,80.92,321.63,241.19,599.22,554.06,291.42,393.62,606.18,Equal basal,2.85610800736206,3.77734680999699,4.2294383340838,4.403402102717
Merged-chr1-91956458-3,chr1,91956227,91956647,+,813.166687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_207225, intron 20 of 26)","intron (NM_207225, intron 20 of 26)",154976,NM_007855,13345,Mm.9474,NM_007855,ENSMUSG00000007805,Twist2,Dermo1|bHLHa39,twist basic helix-loop-helix transcription factor 2,protein-coding,0,1.92,0.67,1.75,1.62,0,4.05,1.26,0,0,0,26.63,0,0,0,3.75,28.4,70.71,0,3.26,3.02,319.38,229.21,80.92,138.89,170.25,65.72,74.17,48,50.1,125.42,Equal basal,0.897605045441126,1.08022197501579,4.88156622074798,1.13822658948171
Merged-chr1-62722258-4,chr1,62721910,62722600,+,812.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001077404, intron 2 of 16)",(CA)n|Simple_repeat|Simple_repeat,18938,NM_001077407,18187,Mm.266341,NM_010939,ENSMUSG00000025969,Nrp2,1110048P06Rik|Np-2|Np2|Npn-2|Npn2,neuropilin 2,protein-coding,10.34,15.7,12.45,15.77,15.95,15.67,21.26,7.56,0,0,0,0,0,0,0,0,47.56,57.02,9.5,26.04,30.22,0,0,0,0,0,0,0,0,0,0,Equal basal,3.7264138651897,3.65860855425668,5.08890229154327,4.21324763890461
Merged-chr17-65786464-7,chr17,65786205,65786796,+,812.638062,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_152099, intron 2 of 20)","intron (NR_152099, intron 2 of 20)",3145,NR_104465,70351,Mm.48686,NM_146081,ENSMUSG00000061950,Ppp4r1,3110001J10Rik|Pp4r1,"protein phosphatase 4, regulatory subunit 1",protein-coding,18.2,22.75,15.82,21.47,21,13.65,38.47,13.86,56.58,76.68,36.37,87.5,36.3,39.75,17.73,48.69,54.82,71.85,17.89,24.74,46.09,386.41,269.66,137.21,149.85,70.94,185.57,270.49,113.14,236.17,174.19,Equal basal,4.24245515751775,4.11162061809443,5.35090118786795,4.6730954621188
Merged-chr14-48459576-7,chr14,48459383,48459916,+,812.585022,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001310584, intron 4 of 16)","intron (NM_001310584, intron 4 of 16)",13297,NR_132324,218989,Mm.85211,NM_172600,ENSMUSG00000036339,Tmem260,5930435P15|6720456H20Rik,transmembrane protein 260,protein-coding,8.27,9.93,7.74,11.92,4.44,5.05,7.09,2.52,71.34,126.3,145.48,102.71,70.18,48.58,110.8,104.88,32.36,36.49,2.79,5.21,12.84,354.86,323.59,168.88,131.58,85.13,92.78,139.61,75.43,168.19,167.22,Low basal,3.25825896347978,2.24149976564082,4.51116532848666,2.62882802406064
Merged-chr5-100628191-6,chr5,100628000,100628372,+,812.488892,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,46070,NM_027978,71883,Mm.260661,NM_027978,ENSMUSG00000029319,Coq2,2310002F18Rik|PHB:PPT,coenzyme Q2 4-hydroxybenzoate polyprenyltransferase,protein-coding,7.86,15.38,9.42,11.04,21.61,28.3,19.24,12.92,4.92,18.04,0,15.22,38.72,119.24,84.21,22.47,40.29,47.9,13.41,52.74,52.88,220.8,134.83,38.7,157.16,163.16,15.46,130.88,68.57,96.62,132.38,Equal basal,3.43230189811757,4.10908870915549,4.85139158693396,4.95601857109456
Merged-chr15-102395153-4,chr15,102394978,102395446,+,812.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-11104,NM_013672,20683,Mm.4618,NM_013672,ENSMUSG00000001280,Sp1,1110003E12Rik|AA450830|AI845540|Sp1-1,trans-acting transcription factor 1,protein-coding,14.07,5.77,12.12,13.14,11.11,17.18,14.17,16.38,0,0,0,0,0,0,0,0,54.16,71.85,8.94,25.39,40.04,0,0,0,0,0,0,0,0,0,0,Equal basal,3.46616942479679,3.70246853218466,5.34237369892374,4.30455512010985
Merged-chr18-9506427-2,chr18,9506250,9506585,+,811.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-56263,NM_026484,67974,Mm.86523,NM_026484,ENSMUSG00000024286,Ccny,1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik,cyclin Y,protein-coding,6.21,6.73,3.03,8.85,4.64,6.07,3.54,10.4,0,0,0,0,0,0,0,0,32.36,43.34,5.59,11.07,12.84,0,0,0,0,0,0,0,0,0,0,Equal basal,2.62099215270969,2.48370295182469,4.62975926213562,3.21773459016717
Merged-chr4-154943831-7,chr4,154943567,154944033,+,810.655579,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-15723,NM_178931,230979,Mm.215147,NM_178931,ENSMUSG00000042333,Tnfrsf14,Atar|HveA|Hvem|Tnfrs14,"tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)",protein-coding,9.52,23.71,6.06,7.97,22.42,15.16,13.16,7.56,93.48,144.34,100.02,129.34,38.72,48.58,79.78,93.64,33.03,49.04,7.83,24.09,21.15,232.63,247.19,189.99,182.75,170.25,123.71,196.32,144,64.41,195.09,Equal basal,3.39275173260213,3.6155950326574,4.72955981969231,3.92929950887472
Merged-chr11-73025277-4,chr11,73025133,73025465,+,810.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_018883, intron 1 of 15)","intron (NM_018883, intron 1 of 15)",6291,NM_018883,55984,Mm.9998,NM_018883,ENSMUSG00000020785,Camkk1,AI846603|CaMKKalpha|Camkk,"calcium/calmodulin-dependent protein kinase kinase 1, alpha",protein-coding,7.03,4.16,7.07,10.16,11.31,6.57,8.1,8.82,0,0,0,0,0,0,0,0,35.67,37.63,7.27,19.53,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,2.82947962318545,2.99499271089715,4.59968392762359,3.81757114909678
Merged-chr2-120446574-5,chr2,120446412,120446743,+,810.099976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_172672, intron 17 of 23)","intron (NM_172672, intron 17 of 23)",-17016,NM_001177799,12335,Mm.458021,NM_007601,ENSMUSG00000079110,Capn3,AI323605|Capa-3|Capa3|Lp82|p94,calpain 3,protein-coding,12.41,12.17,17.16,27.34,7.67,15.16,16.2,17.33,49.2,54.13,40.92,34.24,62.92,79.49,26.59,48.69,53.5,77.55,12.3,30.6,32.49,110.4,116.85,87.96,197.37,92.22,150.77,183.23,68.57,93.04,104.51,Equal basal,4.02165659636619,3.60637294595512,5.38753909123276,4.43675344562418
Merged-chr11-21009288-3,chr11,21009159,21009410,+,809,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-82040,NM_023324,67245,Mm.28957,NM_023324,ENSMUSG00000020134,Peli1,2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e,pellino 1,protein-coding,5.38,2.88,2.36,5.7,4.24,12.13,12.65,5.04,0,0,0,0,0,0,0,0,25.1,34.21,4.47,19.53,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,2.10607667242676,2.85396062029149,4.29197377952133,3.46653765013024
Merged-chr5-92345270-6,chr5,92345029,92345492,+,808.958313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001310664, intron 2 of 10)","intron (NM_001310664, intron 2 of 10)",3629,NM_021274,15945,Mm.877,NM_021274,ENSMUSG00000034855,Cxcl10,C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1,chemokine (C-X-C motif) ligand 10,protein-coding,23.17,37.16,13.46,9.46,29.48,44.48,22.27,6.93,9.84,54.13,27.28,0,2.42,22.08,26.59,0,71.33,120.89,16.21,44.27,49.11,141.95,80.9,24.63,98.68,127.69,123.71,39.26,41.14,64.41,41.81,Equal basal,4.17932725483211,4.22970622270107,5.90484656946511,4.92623460220381
Merged-chr8-39619652-3,chr8,39619533,39619778,+,808.733337,.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001113326, intron 5 of 9)","intron (NM_001113326, intron 5 of 9)",23023,NM_031195,20288,Mm.239291,NM_031195,ENSMUSG00000025044,Msr1,MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr,macrophage scavenger receptor 1,protein-coding,5.79,7.05,4.04,11.83,14.34,16.68,15.19,9.77,24.6,0,4.55,22.82,12.1,0,0,22.47,20.48,35.35,5.03,21.49,22.66,153.77,134.83,109.07,120.61,184.44,108.25,74.17,54.86,78.72,104.51,Equal basal,2.85907129379727,3.6047655199811,4.1760468997887,3.71805215792026
Merged-chr6-108444675-4,chr6,108444485,108444877,+,808.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010585, intron 44 of 61)","intron (NM_010585, intron 44 of 61)",-45062,NR_106121,102465766,NA,NR_106121,ENSMUSG00000105697,Mir7661,mmu-mir-7661,microRNA 7661,ncRNA,12,11.53,9.42,17.96,15.95,13.14,11.64,16.7,0,0,0,0,0,0,0,0,43.59,62.72,15.09,36.46,28.71,0,0,0,0,0,0,0,0,0,0,Equal basal,3.64074125146358,3.65565161228182,5.09472962331413,4.55453573101626
Merged-chr4-41129586-4,chr4,41129445,41129724,+,807.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-5245,NM_139236,230082,Mm.285797,NM_139236,ENSMUSG00000028430,Nol6,AA410091|Nrap,nucleolar protein family 6 (RNA-associated),protein-coding,4.96,4.49,3.03,8.41,12.52,11.62,12.15,4.41,0,0,0,0,0,0,0,0,25.1,41.06,6.71,17.58,18.13,0,0,0,0,0,0,0,0,0,0,Equal basal,2.45626602866917,3.12819120944122,4.41746107832807,3.65056977850151
Merged-chr14-76780713-4,chr14,76780554,76780881,+,807.572876,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,20586,NR_153763,73883,Mm.489041,NR_153763,NA,4930431P22Rik,-,RIKEN cDNA 4930431P22 gene,ncRNA,0.41,1.28,2.69,0,19.99,12.64,6.58,10.71,7.38,0,9.09,0,24.2,39.75,4.43,33.71,8.59,1.14,9.5,31.25,30.22,122.23,94.38,109.07,182.75,113.5,220.36,270.49,140.57,275.54,243.87,High basal,0.748742026441943,3.37751392226061,1.7796904073544,4.29701857231184
Merged-chr6-87122416-8,chr6,87122050,87122804,+,807.322937,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,17681,NM_001167937,52372,Mm.282851,NM_001167937,ENSMUSG00000090891,D6Ertd527e,AU043841,"DNA segment, Chr 6, ERATO Doi 527, expressed",protein-coding,40.13,22.75,35.67,39.43,32.51,33.36,33.41,43.48,0,0,0,0,0,0,0,0,96.43,131.15,28.51,82.69,83.86,0,0,0,0,0,0,0,0,0,0,Equal basal,5.01429541752025,4.92449590142948,6.17669556091888,5.7342444834604
Merged-chr3-9000496-4,chr3,9000348,9000660,+,806,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_009412, intron 1 of 5)",RMER6A|LTR|ERVK,3700,NM_001357073,21985,Mm.371590,NM_009412,ENSMUSG00000027506,Tpd52,AI043038|mD52,tumor protein D52,protein-coding,8.69,10.57,5.38,11.74,13.73,5.56,13.67,12.92,0,0,0,0,0,0,0,0,42.93,44.48,7.27,16.93,25.69,0,0,0,0,0,0,0,0,0,0,Equal basal,3.17454577885021,3.27586204227732,4.84428139507249,3.82554269337126
Merged-chr9-41085373-5,chr9,41085236,41085508,+,805.627625,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_176860, intron 1 of 13)","intron (NM_176860, intron 1 of 13)",-5866,NM_001357412,72828,Mm.133615,NM_176860,ENSMUSG00000032020,Ubash3b,2810457I06Rik|BB125008|STS-1|TULA-2|p70,"ubiquitin associated and SH3 domain containing, B",protein-coding,5.38,17.94,4.71,4.29,19.39,18.7,16.2,2.21,34.44,63.15,36.37,72.28,26.62,97.16,57.62,41.2,18.49,47.9,7.27,24.74,26.44,102.52,130.34,80.92,65.79,127.69,127.58,139.61,109.71,157.45,243.87,Equal basal,2.84208285275257,3.30011349389176,4.31735094919474,4.01006306165703
Merged-chr6-39228794-3,chr6,39228615,39228965,+,804.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-22017,NM_001033430,338523,Mm.293175,NM_001033430,ENSMUSG00000042599,Kdm7a,A630082K20Rik|BB041802|Jhdm1d|mKIAA1718,lysine (K)-specific demethylase 7A,protein-coding,14.07,10.57,12.12,29,11.11,8.09,9.62,6.93,0,0,0,0,0,0,0,0,65.39,96.94,4.47,13.02,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,3.91569255369302,3.0301821639584,5.68666935996078,3.38155392460965
Merged-chr13-52275904-4,chr13,52275712,52276047,+,803.133362,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,179138,NR_045061,74050,Mm.84860,NR_045061,ENSMUSG00000113211,4921525O09Rik,-,RIKEN cDNA 4921525O09 gene,ncRNA,9.52,9.61,11.44,7.89,10.9,14.66,16.2,12.29,0,0,0,0,0,0,0,0,31.7,51.32,11.18,24.74,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,3.29644777065545,3.57522580378371,4.73297790382366,4.21459860666645
Merged-chr2-101782354-5,chr2,101782058,101782662,+,802.971436,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001355625, intron 1 of 8)","intron (NM_001355625, intron 1 of 8)",15347,NM_175181,72446,Mm.24138,NM_175181,ENSMUSG00000032841,Prr5l,2600010E01Rik|4833411O04Rik|Protor-2|Protor2,proline rich 5 like,protein-coding,8.27,5.13,14.14,10.95,8.89,17.18,12.65,7.25,63.96,63.15,136.39,136.95,116.15,61.83,0,48.69,29.06,55.88,5.59,9.77,12.84,350.92,292.13,225.17,599.41,553.33,208.76,253.04,212.57,186.08,397.15,Equal basal,3.24657402295775,3.30217130166873,4.73237744742666,3.16436862390775
Merged-chr17-71866439-2,chr17,71866241,71866604,+,802.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,84475,NM_030179,78785,Mm.196382,NM_030179,ENSMUSG00000024059,Clip4,1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2,"CAP-GLY domain containing linker protein family, member 4",protein-coding,1.24,6.73,2.36,5.43,1.21,0.51,0,0.63,24.6,0,27.28,106.52,12.1,57.41,0,0,19.82,29.65,0,1.3,2.27,394.29,413.48,225.17,321.63,319.23,11.6,21.81,0,42.94,0,Low basal,1.94059681447267,0.425890332104166,4.03371892762244,0.782109845327287
Merged-chr17-56023190-3,chr17,56023041,56023335,+,802.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_013664, intron 1 of 9)","intron (NM_013664, intron 1 of 9)",13449,NM_013664,20405,Mm.1773,NM_013664,ENSMUSG00000003200,Sh3gl1,C77078|EEN|SH3P8|Sh3d2b,SH3-domain GRB2-like 1,protein-coding,8.69,2.24,4.38,5.35,7.27,8.59,8.61,6.62,0,0,0,0,0,0,0,0,42.27,49.04,5.59,15.63,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,2.36184890862175,2.83621797106628,4.90126722197587,3.60457441425436
Merged-chr7-104370817-5,chr7,104370566,104371012,+,802.200012,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,ORR1D1|LTR|ERVL-MaLR,-12143,NM_175648,244183,Mm.347647,NM_175648,ENSMUSG00000052749,Trim30b,A530023O14Rik|Trim30-1,tripartite motif-containing 30B,protein-coding,7.03,7.69,10.43,10.34,18.78,11.12,7.09,11.66,46.74,27.06,27.28,60.87,4.84,30.91,79.78,37.46,32.36,50.18,8.38,19.53,32.49,138,89.89,87.96,127.92,85.13,85.05,178.87,54.86,125.24,313.54,Equal basal,3.17132551399998,3.39219945243665,4.73158072743372,4.06019054498658
Merged-chr4-132624350-8,chr4,132623985,132624589,+,801.806946,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RMER19B|LTR|ERVK,-14759,NM_210071,14050,Mm.227733,NM_010166,ENSMUSG00000028886,Eya3,AI844637,EYA transcriptional coactivator and phosphatase 3,protein-coding,13.65,10.89,6.39,8.67,21.61,39.93,31.38,8.51,88.56,72.17,136.39,60.87,113.73,101.58,150.69,86.15,38.97,78.69,10.06,28,51.37,619.04,233.71,450.34,522.65,326.32,274.48,344.65,147.43,479.51,320.51,High basal,3.28149072408395,4.24851266007987,5.17596930615177,4.51804504322581
Merged-chr7-97034372-5,chr7,97034212,97034562,+,801.213318,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_153591, intron 9 of 13)",L2a|LINE|L2,-47364,NM_001162477,14389,Mm.42033,NM_010248,ENSMUSG00000004508,Gab2,AI463667|D130058I17Rik|p97,growth factor receptor bound protein 2-associated protein 2,protein-coding,6.62,8.33,6.39,3.94,16.36,13.14,16.2,8.19,22.14,54.13,54.55,38.04,14.52,53,53.19,37.46,20.48,29.65,11.74,24.74,27.95,177.43,112.36,35.18,175.44,212.82,166.24,82.89,41.14,132.4,167.22,Equal basal,2.72859980406652,3.55449032098058,4.05585343346661,4.24918826209967
Merged-chr1-125420078-2,chr1,125419939,125420207,+,800.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001205386, intron 2 of 12)","intron (NM_001205386, intron 2 of 12)",15654,NM_001205386,74117,Mm.183102,NM_023735,ENSMUSG00000026341,Actr3,1200003A09Rik|Arp3,ARP3 actin-related protein 3,protein-coding,4.96,2.88,4.38,8.32,3.43,2.02,10.12,6.3,0,0,0,0,0,0,0,0,26.42,47.9,7.27,10.42,10.58,0,0,0,0,0,0,0,0,0,0,Equal basal,2.41271378684459,2.29424573289657,4.55943512282305,3.22201798441545
Merged-chr1-92215549-4,chr1,92215238,92215767,+,800.25,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-35161,NM_207225,208727,Mm.318567,NM_207225,ENSMUSG00000026313,Hdac4,4932408F19Rik|HD4,histone deacetylase 4,protein-coding,7.45,6.41,14.14,9.55,14.34,4.55,11.64,5.04,34.44,76.68,18.18,41.85,16.94,17.67,0,67.42,42.93,42.2,8.38,18.88,23.42,177.43,94.38,45.74,87.72,0,15.46,69.8,41.14,28.63,83.61,Equal basal,3.23499233600893,2.87265213385182,4.80782091873475,3.8954492005843
Merged-chr2-73037427-3,chr2,73037247,73037577,+,799.111084,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-56966,NM_001018042,20687,Mm.124328,NM_011450,ENSMUSG00000027109,Sp3,D130027J01Rik,trans-acting transcription factor 3,protein-coding,10.76,7.69,8.08,4.73,8.89,5.56,15.19,18.9,0,0,0,0,0,0,0,0,33.03,67.29,10.06,19.53,21.15,0,0,0,0,0,0,0,0,0,0,Equal basal,3.00843503569482,3.32024091383864,4.95079442987405,3.94600618351435
Merged-chr10-122562121-8,chr10,122561928,122562296,+,798.450012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,7779,NR_040616,319272,Mm.411763,NR_040616,ENSMUSG00000112095,A130077B15Rik,-,RIKEN cDNA A130077B15 gene,ncRNA,11.17,11.53,17.5,18.14,12.12,13.65,27.33,10.08,71.34,99.23,18.18,41.85,41.14,97.16,0,59.93,52.84,79.83,11.18,26.69,51.37,283.89,278.65,218.13,296.05,595.89,305.41,209.41,185.14,221.86,452.89,Equal basal,3.82728168212335,3.70389418255958,5.39924785467646,4.54363464326366
Merged-chr2-104105441-4,chr2,104105226,104105619,+,797.916687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_007652, intron 2 of 3)","intron (NM_007652, intron 2 of 3)",9621,NM_001111060,12509,Mm.247265,NM_007652,ENSMUSG00000032679,Cd59a,AA987121|Cd59|protectin,CD59a antigen,protein-coding,10.76,15.38,11.44,8.24,8.08,7.08,7.59,4.73,78.72,94.72,54.55,41.85,38.72,48.58,53.19,29.97,40.95,37.63,5.03,10.42,9.07,157.72,247.19,59.81,91.37,127.69,54.12,87.25,41.14,21.47,83.61,Equal basal,3.51904211643326,2.67730910547736,4.69585882851185,2.99955475924422
Merged-chr1-180344953-2,chr1,180344813,180345123,+,797.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001081175, intron 2 of 7)","intron (NM_001081175, intron 2 of 7)",-14419,NR_003623,277333,Mm.389223,NM_199472,NA,Gm5069,EG277333,glyceraldehyde-3-phosphate dehydrogenase pseudogene,pseudo,4.14,3.2,3.7,5.87,7.88,5.56,10.63,11.03,0,0,0,0,0,0,0,0,19.15,30.79,5.03,14.32,18.13,0,0,0,0,0,0,0,0,0,0,Equal basal,2.25428325800838,2.95158049346123,4.03657799369519,3.4367133456997
Merged-chr5-74710297-4,chr5,74710135,74710509,+,796.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-7419,NM_001159577,16924,Mm.440403,NM_010727,ENSMUSG00000029228,Lnx1,Lnx,ligand of numb-protein X 1,protein-coding,2.48,4.49,5.72,7.45,2.02,0,0.51,2.21,39.36,22.55,36.37,41.85,29.04,0,44.32,0,30.38,54.74,0.56,2.6,1.51,362.75,521.35,281.46,380.11,297.94,81.18,61.08,48,96.62,83.61,Low basal,2.42364514094541,0.741277156008966,4.74861263441968,1.14137800345088
Merged-chr1-172000827-4,chr1,172000685,172000950,+,796.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_033509),TTS (NM_033509),26478,NM_033509,93840,Mm.36148,NM_033509,ENSMUSG00000026556,Vangl2,C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus,VANGL planar cell polarity 2,protein-coding,9.1,6.73,1.35,7.27,11.31,13.65,9.11,10.71,0,0,13.64,0,0,0,0,0,27.08,46.76,10.06,17.58,24.18,0,0,0,0,0,0,0,0,0,0,Equal basal,2.53321380945513,3.34038234474475,4.55962596152662,3.95908641127562
Merged-chr1-164316884-3,chr1,164316752,164317017,+,795.666687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_178071, intron 3 of 9)","intron (NM_178071, intron 3 of 9)",9212,NM_138314,171567,Mm.219428,NM_138314,ENSMUSG00000026575,Nme7,D530024H21Rik|Nm23-M7|Nm23-r7,NME/NM23 family member 7,protein-coding,7.03,5.77,2.69,5.87,14.34,6.07,10.12,5.04,0,0,0,0,0,0,0,0,24.44,46.76,6.15,14.32,15.11,0,0,0,0,0,0,0,0,0,0,Equal basal,2.49932643050245,2.95996425903481,4.48935234453467,3.44146713461894
Merged-chr2-21016802-4,chr2,21016642,21016967,+,795.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,47930,NR_033225,433408,Mm.386941,NR_033225,NA,Gm13375,-,predicted gene 13375,ncRNA,5.38,8.65,7.4,14.72,10.3,18.2,10.12,8.82,0,0,0,0,0,0,0,0,36.33,53.6,9.5,20.18,21.91,0,0,0,0,0,0,0,0,0,0,Equal basal,3.12649873961108,3.38177594307026,4.85766012730536,3.95100527282498
Merged-chr11-70198537-3,chr11,70198329,70198702,+,794.944458,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,RLTR19B|LTR|ERVK,-15395,NM_153081,216867,Mm.289238,NM_153081,ENSMUSG00000040938,Slc16a11,AB041591|MCT 11|MNCb-2717,"solute carrier family 16 (monocarboxylic acid transporters), member 11",protein-coding,11.17,3.84,6.39,14.02,2.42,2.02,3.04,0,14.76,0,27.28,15.22,0,0,0,0,39.63,49.04,1.12,3.91,4.53,98.57,148.31,63.33,69.44,120.6,27.06,26.18,37.71,96.62,41.81,Low basal,3.05758742208252,1.13857960512715,4.85623297881719,1.79158015481204
Merged-chr8-35663104-3,chr8,35662833,35663445,+,794.638916,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001081279, intron 1 of 2)",MTD|LTR|ERVL-MaLR,-74119,NR_040376,100504714,Mm.381744,NR_040376,ENSMUSG00000097357,Gm16793,-,"predicted gene, 16793",ncRNA,5.38,2.88,4.38,11.22,7.27,10.61,2.02,3.78,34.44,153.36,113.65,0,33.88,53,44.32,11.24,31.7,34.21,6.71,7.81,9.82,252.35,94.38,133.69,230.26,205.72,146.91,87.25,137.14,114.51,209.03,Equal basal,2.5131126048679,2.38893818949307,4.45260729219288,3.03538348053297
Merged-chr19-14507835-3,chr19,14507627,14508136,+,793.722229,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001302951, intron 8 of 19)","intron (NM_001302951, intron 8 of 19)",-69375,NR_003027,19862,NA,NR_003027,ENSMUSG00000095132,Rnu6,-,U6 small nuclear RNA,snRNA,16.13,12.17,20.19,25.5,21.2,15.16,26.83,20.17,0,0,0,0,0,0,0,0,51.52,78.69,15.09,35.16,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,4.13772149036775,4.15644592139915,5.37130711108403,4.51295026934019
Merged-chr7-92711801-5,chr7,92711637,92711953,+,792.166687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,L1M5|LINE|L1,29664,NR_015510,666737,Mm.473620,NR_015510,ENSMUSG00000074024,4632427E13Rik,AU015482,RIKEN cDNA 4632427E13 gene,ncRNA,0.83,4.49,1.68,3.86,12.52,13.65,25.31,9.77,29.52,18.04,27.28,0,48.4,119.24,79.78,71.17,9.91,13.69,13.41,30.6,28.71,149.83,211.23,116.1,58.48,106.41,158.5,183.23,174.85,146.71,229.93,High basal,1.6420777630311,3.66702312078503,3.06812336942634,4.41960733070373
Merged-chr2-167723983-1,chr2,167723828,167724139,+,792,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,32806,NR_015500,329562,Mm.123101,NM_177851,ENSMUSG00000006462,A530013C23Rik,-,RIKEN cDNA A530013C23 gene,ncRNA,4.14,4.49,0.67,3.33,4.85,4.04,4.05,6.3,0,0,0,0,0,0,0,0,29.72,21.67,1.68,11.07,12.84,0,0,0,0,0,0,0,0,0,0,Equal basal,1.83540660054788,2.31189105385008,4.09913928120053,2.7526693110387
Merged-chr2-91088022-4,chr2,91087851,91088199,+,789.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-8653,NM_011355,20375,Mm.1302,NM_011355,ENSMUSG00000002111,Spi1,Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1,spleen focus forming virus (SFFV) proviral integration oncogene,protein-coding,8.69,9.29,9.09,6.92,7.88,15.67,14.68,9.45,0,22.55,0,7.61,0,44.16,0,0,45.57,39.92,7.83,29.3,30.22,23.66,22.47,45.74,76.75,0,15.46,13.09,3.43,14.31,62.71,Equal basal,3.11045721851358,3.36493832545452,4.81119231975759,4.1811522826048
Merged-chrX-159835455-3,chrX,159835289,159835615,+,789.133362,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_021389, intron 5 of 16)",MIR|SINE|MIR,-5016,NM_001135728,58194,Mm.286495,NM_021389,ENSMUSG00000040990,Sh3kbp1,1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta,SH3-domain kinase binding protein 1,protein-coding,4.14,0,0,2.02,17.37,21.23,13.16,19.53,17.22,0,4.55,22.82,0,0,0,0,7.93,12.54,10.62,24.74,40.04,78.86,89.89,49.26,124.27,113.5,11.6,0,0,14.31,0,High basal,0.935637868239249,3.96359814825518,2.87371168355857,4.36962041677059
Merged-chr4-122854361-2,chr4,122854229,122854495,+,789,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008917, intron 6 of 8)","intron (NM_008917, intron 6 of 8)",18135,NM_008917,19063,Mm.277719,NM_008917,ENSMUSG00000028657,Ppt1,9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT,palmitoyl-protein thioesterase 1,protein-coding,2.07,2.56,2.02,3.86,7.88,5.56,3.54,2.52,0,0,0,0,0,0,0,0,23.78,37.63,1.12,9.11,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,1.7123655460289,2.17120468699988,4.32052941989349,2.63498674874714
Merged-chr4-141652512-6,chr4,141652260,141652682,+,788.794434,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001347237, intron 1 of 18)","intron (NM_001347237, intron 1 of 18)",11644,NM_001347237,69582,Mm.33220,NM_001033150,ENSMUSG00000028917,Plekhm2,2310034J19Rik|AI854247|mKIAA0842,"pleckstrin homology domain containing, family M (with RUN domain) member 2",protein-coding,2.48,7.05,0.67,3.15,16.96,25.27,18.73,11.66,56.58,72.17,0,45.65,82.27,114.83,75.35,149.83,13.87,23.95,8.38,33.86,45.33,169.55,215.73,94.99,98.68,70.94,394.33,401.37,298.28,379.31,209.03,High basal,1.81908064459265,3.9380788562934,3.65200225509596,4.46593891738941
Merged-chr15-27662918-4,chr15,27662727,27663126,+,788.400024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001242424, intron 4 of 8)","intron (NM_001242424, intron 4 of 8)",18616,NM_001242424,223433,Mm.266485,NM_198301,ENSMUSG00000056069,Fam105a,9830126M18,"family with sequence similarity 105, member A",protein-coding,12.82,8.33,11.11,11.04,11.71,17.18,10.12,17.33,0,0,0,0,0,0,0,0,40.95,51.32,10.62,23.44,49.11,0,0,0,0,0,0,0,0,0,0,Equal basal,3.4409608809046,3.63042526427112,4.91076046671628,4.44002644494017
Merged-chr19-55751710-3,chr19,55751565,55751860,+,788.333313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NR_138565, intron 3 of 15)","intron (NR_138565, intron 3 of 15)",9902,NM_001142923,21416,Mm.139815,NM_009333,ENSMUSG00000024985,Tcf7l2,TCF4B|TCF4E|Tcf-4|Tcf4,"transcription factor 7 like 2, T cell specific, HMG box",protein-coding,5.79,7.69,5.72,8.24,10.1,5.56,6.58,5.36,9.84,54.13,27.28,34.24,43.56,26.5,31.03,18.73,20.48,31.93,5.03,13.02,11.33,86.74,89.89,52.77,36.55,42.56,81.18,34.9,20.57,14.31,0,Equal basal,2.85660196438445,2.64158978468905,4.10635825059108,3.18975954977739
Merged-chr1-53873847-4,chr1,53873652,53874013,+,787.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001001883, intron 17 of 28)","intron (NM_001001883, intron 17 of 28)",24408,NR_106149,102465783,NA,NR_106149,ENSMUSG00000098443,Mir7681,Gm27806|mmu-mir-7681,microRNA 7681,ncRNA,8.69,5.45,7.4,12.35,14.54,18.2,3.04,7.88,0,0,0,0,0,0,0,0,43.59,61.58,8.38,16.28,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,3.07379704219051,3.10968154807648,5.08186580117929,3.74986623908402
Merged-chr17-45745836-4,chr17,45745630,45745986,+,787.416687,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_152153, intron 1 of 4)","intron (NR_152153, intron 1 of 4)",11302,NR_152153,433111,Mm.213441,NR_152153,ENSMUSG00000097727,F630040K05Rik,-,RIKEN cDNA F630040K05 gene,ncRNA,9.1,2.24,2.69,7.8,8.28,18.2,8.61,4.1,0,0,27.28,0,16.94,0,0,0,52.84,47.9,10.62,20.18,17.38,59.14,8.99,49.26,76.75,0,108.25,91.62,102.86,89.46,160.26,Equal basal,2.39776843704742,2.97928368713586,5.04128430434705,3.89712682626799
Merged-chr19-16107904-3,chr19,16107723,16108056,+,786.888855,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-24942,NM_008139,14682,Mm.439701,NM_008139,ENSMUSG00000024639,Gnaq,1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI,"guanine nucleotide binding protein, alpha q polypeptide",protein-coding,6.62,2.24,3.7,2.54,17.97,18.7,15.19,7.25,14.76,27.06,0,41.85,7.26,0,26.59,0,17.83,17.11,11.18,38.41,32.49,90.69,26.97,84.44,54.82,170.25,54.12,135.24,44.57,67.99,41.81,High basal,2.02750483270837,3.62027239290047,3.59578445150027,4.49884576915043
Merged-chr3-104501849-3,chr3,104501708,104501972,+,786.777771,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001025067, intron 1 of 17)",ORR1E|LTR|ERVL-MaLR,10078,NM_001025067,269473,Mm.34855,NM_001025067,ENSMUSG00000032913,Lrig2,4632419I10Rik|BB096938|LIG-2,leucine-rich repeats and immunoglobulin-like domains 2,protein-coding,2.48,3.52,3.7,6.13,9.09,7.58,7.09,6.93,27.06,58.64,0,72.28,12.1,136.91,0,0,19.15,31.93,6.71,12.37,20.4,35.49,103.37,73.88,80.41,28.38,135.31,56.71,37.71,78.72,76.64,Equal basal,2.13587775843053,2.84680704799489,4.06138848354645,3.54828961812656
Merged-chr2-79618760-2,chr2,79618635,79618897,+,785.75,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,-16659,NM_080558,70599,Mm.272881,NM_080558,ENSMUSG00000027007,Ssfa2,5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927,sperm specific antigen 2,protein-coding,7.03,4.81,5.38,6.05,4.64,3.54,7.09,5.67,0,0,0,0,0,0,0,22.47,32.36,33.07,3.91,13.67,4.53,0,0,0,0,0,0,0,0,0,0,Equal basal,2.63386132266889,2.33544346537411,4.44365243524466,2.74191634963912
Merged-chr3-116848406-2,chr3,116848268,116848525,+,785,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-11171,NM_001113478,20321,Mm.66293,NM_009146,ENSMUSG00000033386,Frrs1,AI131732|Sdfr2,ferric-chelate reductase 1,protein-coding,2.48,2.56,3.7,3.68,7.67,4.04,0,2.52,22.14,27.06,0,0,0,4.42,0,0,23.12,27.37,3.91,8.46,7.55,74.92,17.98,52.77,40.2,63.85,30.93,34.9,48,50.1,41.81,Equal basal,1.92786921110578,1.70340648401098,4.08385771171733,2.73357172819372
Merged-chr1-77485461-3,chr1,77485280,77485628,+,784.888916,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_007936, intron 3 of 17)","intron (NM_007936, intron 3 of 17)",11314,NR_105770,102465180,NA,NR_105770,ENSMUSG00000099141,Mir6352,Gm27481|mmu-mir-6352,microRNA 6352,ncRNA,3.72,0,1.35,5.35,2.63,1.52,0,6.62,2.46,0,27.28,0,9.68,0,26.59,0,35.67,52.46,0.56,0.65,3.78,114.35,71.91,14.07,98.68,78.03,100.51,95.98,0,85.88,111.48,Equal basal,1.4605184451594,1.34285066582202,4.82990880571277,1.08500910152719
Merged-chr17-43458790-4,chr17,43458640,43458947,+,783.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"3' UTR (NM_001081178, exon 21 of 21)","3' UTR (NM_001081178, exon 21 of 21)",43980,NM_008585,17287,Mm.5346,NM_008585,ENSMUSG00000023914,Mep1a,AI098089|AW107200|Mep-1|Mep-1a|Mep1,meprin 1 alpha,protein-coding,9.93,9.61,3.37,7.89,13.53,9.1,9.11,4.1,44.28,18.04,45.46,41.85,53.24,22.08,101.94,44.95,19.82,37.63,9.5,11.72,22.66,63.09,107.86,56.29,84.06,49.66,166.24,139.61,89.14,114.51,83.61,Equal basal,2.94470676502899,2.94764324709332,4.19689166109633,3.72588280161392
Merged-chr10-111389128-4,chr10,111388978,111389296,+,783.625,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-84090,NM_001358932,53605,Mm.290407,NM_015781,ENSMUSG00000058799,Nap1l1,AA407126|AI256722|D10Ertd68e|NAP-1,nucleosome assembly protein 1-like 1,protein-coding,13.65,4.49,5.38,7.45,10.1,11.12,8.1,9.45,0,0,0,0,0,0,0,0,28.4,44.48,8.38,17.58,18.89,0,0,0,0,0,0,0,0,0,0,Equal basal,2.92266321266279,3.17152055919683,4.55764589411383,3.76663535589834
Merged-chr12-105026334-4,chr12,105026168,105026580,+,783.375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,4767,NR_037229,100526471,NA,NR_037229,ENSMUSG00000106366,Mir3069,mir-3069|mmu-mir-3069,microRNA 3069,ncRNA,9.52,12.17,12.12,11.3,10.9,14.15,19.24,8.51,0,0,0,0,0,0,0,0,70.01,63.86,8.38,31.9,32.49,0,0,0,0,0,0,0,0,0,0,Equal basal,3.50673335252841,3.50722562914883,5.44071998123107,4.28410216918318
Merged-chr4-141425882-3,chr4,141425747,141426025,+,782.333313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,TTS (NM_013868),TTS (NM_013868),5107,NM_013868,29818,Mm.46181,NM_013868,ENSMUSG00000006221,Hspb7,27kDa|Hsp25-2|cvHsp,"heat shock protein family, member 7 (cardiovascular)",protein-coding,2.48,8.33,5.05,4.47,5.45,8.09,14.17,7.88,0,0,0,0,0,0,0,0,23.78,31.93,8.38,24.09,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,2.4125351161701998,2.97465089991855,4.20786150354406,3.87179895896805
Merged-chr1-53791928-4,chr1,53791572,53792196,+,781.9375,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,MIRb|SINE|MIR,-6669,NM_133810,98267,Mm.25559,NM_133810,ENSMUSG00000026094,Stk17b,3110009A03Rik|AI120141|Drak2,serine/threonine kinase 17b (apoptosis-inducing),protein-coding,16.55,22.75,10.77,13.84,17.57,12.13,10.12,11.97,0,0,0,0,0,0,0,0,48.22,66.15,9.5,15.63,29.46,0,0,0,0,0,0,0,0,0,0,Equal basal,3.94067899150034,3.52559728159707,5.2025865377403004,3.97129839933126
Merged-chr7-145198431-6,chr7,145198155,145198695,+,780.680542,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_132643, intron 19 of 22)","intron (NR_132643, intron 19 of 22)",9694,NR_033626,100040049,Mm.102235,NR_033626,ENSMUSG00000109305,1810010D01Rik,Gm2572,RIKEN cDNA 1810010D01 gene,ncRNA,16.55,19.86,28.27,32.16,18.17,24.26,30.37,16.38,12.3,18.04,22.73,0,21.78,44.16,26.59,22.47,70.01,92.38,13.97,25.39,26.44,201.09,103.37,109.07,127.92,85.13,143.04,139.61,68.57,82.3,0,Equal basal,4.51678758110888,4.2447489317002,5.7008430601147,4.31503608477582
Merged-chr2-102764966-6,chr2,102764655,102765210,+,780.633301,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001077514, intron 8 of 10)","intron (NM_001077514, intron 8 of 10)",-18172,NR_153853,102637542,Mm.371582,NR_153852,NA,Gm13872,-,predicted gene 13872,ncRNA,13.24,27.87,8.08,7.45,49.48,49.03,34.42,17.33,27.06,0,4.55,0,7.26,66.25,0,0,77.94,74.13,30.18,93.1,84.62,67.03,53.93,28.15,69.44,0,57.99,157.06,54.86,50.1,83.61,Equal basal,3.63650614437531,4.88636624172578,5.62142558794668,5.82152103878212
Merged-chr2-91090424-4,chr2,91090268,91090594,+,780.208374,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-6247,NM_011355,20375,Mm.1302,NM_011355,ENSMUSG00000002111,Spi1,Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1,spleen focus forming virus (SFFV) proviral integration oncogene,protein-coding,11.58,13.13,9.76,9.55,19.18,5.05,11.14,5.04,22.14,31.57,27.28,49.45,9.68,0,22.16,22.47,40.29,35.35,8.38,14.97,30.98,74.92,62.92,28.15,62.13,63.85,54.12,34.9,13.71,42.94,41.81,Equal basal,3.46332035445947,3.03464769867901,4.64153592883372,3.91974254589346
Merged-chr14-75191334-5,chr14,75191085,75191695,+,779.450012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_008879, intron 2 of 16)","intron (NM_008879, intron 2 of 16)",-50897,NM_019775,56373,Mm.24242,NM_019775,ENSMUSG00000021999,Cpb2,1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI,carboxypeptidase B2 (plasma),protein-coding,12.41,13.46,13.8,10.51,28.88,37.91,24.3,14.49,0,0,0,0,0,0,0,0,48.88,78.69,16.21,62.5,55.15,0,0,0,0,0,0,0,0,0,0,Equal basal,3.65512067872559,4.43227698723542,5.33435035035902,5.14227296534076
Merged-chr8-124085819-4,chr8,124085650,124085982,+,778.299988,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,62343,NM_001029876,382038,Mm.334891,NM_001029876,ENSMUSG00000031976,Urb2,C77575|mKIAA0133,URB2 ribosome biogenesis 2 homolog (S. cerevisiae),protein-coding,0.83,2.56,2.02,0.61,7.27,5.56,7.09,4.1,4.92,0,27.28,0,33.88,0,31.03,0,22.46,36.49,3.35,14.32,17.38,220.8,148.31,84.44,95.03,234.1,77.32,34.9,58.28,218.28,0,Equal basal,1.17413250324905,2.49849267975909,4.26045518870213,3.25211035044951
Merged-chr10-80679766-3,chr10,80679576,80679919,+,778.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-3454,NM_021462,17347,Mm.42126,NM_021462,ENSMUSG00000020190,Mknk2,2010016G11Rik|Gprk7|Mnk2,MAP kinase-interacting serine/threonine kinase 2,protein-coding,6.62,7.05,7.74,9.03,11.51,9.1,6.58,10.4,0,0,0,0,0,0,0,0,31.04,35.35,6.71,15.63,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,2.99620665683625,3.07885416607956,4.46055081374604,3.57920858848066
Merged-chr6-17590404-4,chr6,17590174,17590548,+,777,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-46649,NM_007604,12343,Mm.392504,NM_007604,ENSMUSG00000015733,Capza2,1110053K06Rik|AW208808|Cappa2,"capping protein (actin filament) muscle Z-line, alpha 2",protein-coding,0,0.32,0,1.14,12.32,17.18,10.63,14.81,7.38,0,27.28,0,14.52,97.16,39.89,59.93,7.27,6.84,7.27,24.74,30.98,47.32,85.39,31.66,54.82,85.13,201.03,196.32,58.28,153.87,76.64,High basal,0.25106208508724,3.58681145134009,2.45507713215043,4.0824923597506
Merged-chr11-97433320-3,chr11,97433202,97433455,+,777,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-16832,NM_021493,58996,Mm.394118,NM_021493,ENSMUSG00000049807,Arhgap23,A330041B18Rik,Rho GTPase activating protein 23,protein-coding,7.03,3.84,5.72,6.75,9.49,10.61,13.67,5.99,14.76,0,0,0,0,4.42,0,0,23.12,59.3,4.47,30.6,14.35,0,0,0,0,0,0,0,0,0,0,Equal basal,2.62486722203885,3.10373108619208,4.61723869708516,3.62730370956928
Merged-chr5-34781991-2,chr5,34781842,34782163,+,776.5,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_010414, intron 1 of 66)","intron (NM_010414, intron 1 of 66)",20262,NM_010414,15194,Mm.209071,NM_010414,ENSMUSG00000029104,Htt,AI256365|C430023I11Rik|Hd|Hdh|IT15,huntingtin,protein-coding,2.48,1.92,1.35,5.35,13.53,9.6,12.15,17.96,0,0,0,0,0,0,0,0,31.7,23.95,9.5,17.58,37.02,0,0,0,0,0,0,0,0,0,0,High basal,1.73706078455653,3.53419274109479,4.21059860810716,4.12889268434723
Merged-chr12-17522700-4,chr12,17522469,17522865,+,776.408325,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-22206,NM_013614,18263,Mm.34102,NM_013614,ENSMUSG00000011179,Odc1,ODC,"ornithine decarboxylase, structural 1",protein-coding,0,0,0,0,20.6,20.22,20.75,4.73,0,27.06,4.55,0,135.51,110.41,79.78,0,1.98,11.4,11.74,15.63,33.24,43.37,35.95,63.33,65.79,85.13,197.16,100.34,174.85,339.95,153.29,High basal,0,3.66189399694407,2.07964816016642,4.12184242244612
Merged-chr19-34612901-2,chr19,34612760,34613057,+,775.5,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"3' UTR (NM_001005858, exon 2 of 2)","3' UTR (NM_001005858, exon 2 of 2)",4951,NM_001005858,667370,Mm.271850,NM_001005858,ENSMUSG00000062488,Ifit3b,I830012O16Rik,interferon-induced protein with tetratricopeptide repeats 3B,protein-coding,5.79,3.84,4.71,6.83,2.83,2.02,7.59,8.82,0,0,0,0,0,0,0,0,25.1,53.6,3.35,9.11,8.31,0,0,0,0,0,0,0,0,0,0,Equal basal,2.551741817244,2.25903393913481,4.60267212588752,2.74150243082631
Merged-chr15-80024783-4,chr15,80024426,80025235,+,774.849976,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-10022,NM_011057,18591,Mm.144089,NM_011057,ENSMUSG00000000489,Pdgfb,PDGF-B|Sis,"platelet derived growth factor, B polypeptide",protein-coding,12.41,20.18,10.77,12.18,6.87,11.12,5.06,10.4,54.12,40.6,4.55,87.5,24.2,22.08,35.46,0,48.22,45.62,7.27,9.11,19.64,173.49,121.35,87.96,157.16,234.1,81.18,87.25,54.86,100.2,41.81,Equal basal,3.75779724398457,2.93484376125737,4.94310247932944,3.43576224944416
Merged-chr3-79171761-4,chr3,79171542,79171949,+,773.916687,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MTA_Mm|LTR|ERVL-MaLR,-25870,NM_001099624,76089,Mm.31220,NM_001099624,ENSMUSG00000062232,Rapgef2,5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP,Rap guanine nucleotide exchange factor (GEF) 2,protein-coding,4.96,8.01,3.7,2.98,34.94,42.46,35.94,21.43,17.22,0,4.55,45.65,38.72,57.41,39.89,56.19,13.87,34.21,17.89,43.62,39.29,7.89,0,3.52,0,0,46.39,34.9,44.57,57.25,41.81,High basal,2.37106016382461,4.80655734079628,3.89401093918168,4.86084432843684
Merged-chr1-121427115-7,chr1,121426802,121427549,+,773.280945,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-3892,NM_001025156,70829,Mm.25788,NM_027567,ENSMUSG00000026339,Ccdc93,4633402D15Rik|9230102M16Rik,coiled-coil domain containing 93,protein-coding,10.76,6.41,13.8,17.09,5.45,13.14,14.68,15.44,71.34,36.09,27.28,133.14,72.6,66.25,79.78,183.54,66.05,46.76,5.59,14.32,30.98,335.15,269.66,105.55,237.57,326.32,231.96,126.52,120,107.35,97.55,Equal basal,3.53139675690914,3.36123816481352,5.18181650462255,3.7238807229360402
Merged-chr1-171378140-4,chr1,171377946,171378359,+,772,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001122680, intron 1 of 7)",L2c|LINE|L2,7979,NM_001122680,71740,Mm.263414,NM_027893,ENSMUSG00000006411,Nectin4,1200017F15Rik|Prr4|Pvrl4,nectin cell adhesion molecule 4,protein-coding,14.89,25.95,11.44,8.94,8.48,4.04,4.56,3.78,44.28,27.06,0,26.63,19.36,30.91,26.59,11.24,43.59,60.44,5.03,11.72,9.07,189.26,197.75,84.44,109.65,70.94,38.66,4.36,13.71,25.05,41.81,Low basal,3.82705014410713,2.32450874799659,5.06876840632223,3.05011275135326
Merged-chr11-88145956-5,chr11,88145769,88146086,+,769.93335,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_198013, intron 1 of 10)","intron (NM_198013, intron 1 of 10)",-23638,NM_001172099,103841,Mm.374846,NM_198013,ENSMUSG00000018378,Cuedc1,AI841487|C330016O16Rik,CUE domain containing 1,protein-coding,5.79,10.25,1.35,7.8,5.65,8.09,12.15,9.77,24.6,9.02,27.28,49.45,16.94,26.5,22.16,44.95,21.8,36.49,4.47,24.74,18.13,126.17,161.8,63.33,43.86,85.13,85.05,152.69,78.86,60.83,83.61,Equal basal,2.5624281323997,3.01881995807422,4.24018663501917,3.63289431159576
Merged-chr2-84557379-3,chr2,84556916,84557570,+,768.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-50370,NR_046046,672763,Mm.491046,NR_046046,ENSMUSG00000087362,Gm13710,-,predicted gene 13710,ncRNA,13.24,11.53,17.16,12.62,13.13,9.6,5.06,7.88,9.84,0,22.73,22.82,31.46,0,8.86,0,44.25,67.29,5.03,18.23,19.64,51.26,80.9,31.66,62.13,85.13,96.65,61.08,72,21.47,0,Equal basal,3.76162000903066,2.97648296470551,5.15452342148622,3.57961227944609
Merged-chr4-119082833-6,chr4,119082515,119083145,+,768.086121,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-13719,NR_131914,433751,Mm.224312,NR_131914,ENSMUSG00000066060,Gm12866,-,predicted gene 12866,ncRNA,11.17,8.01,4.71,18.31,15.35,23.25,37.46,13.55,17.22,4.51,0,0,4.84,0,0,0,46.9,62.72,13.41,38.41,38.53,197.15,152.81,102.03,98.68,63.85,146.91,135.24,154.28,82.3,104.51,Equal basal,3.27496734963337,4.17354588231057,5.14584384508055,4.66045942100357
Merged-chr18-67183181-5,chr18,67182986,67183428,+,764.299988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_177137, intron 4 of 11)","intron (NM_177137, intron 4 of 11)",-22152,NM_024190,67064,Mm.73777,NM_024190,ENSMUSG00000109901,Chmp1b,2810405I11Rik|Chmp1b1,charged multivesicular body protein 1B,protein-coding,7.03,6.73,6.06,14.11,1.21,1.52,0,2.52,93.48,193.96,100.02,57.06,16.94,22.08,8.86,29.97,46.24,79.83,1.68,1.95,2.27,492.87,480.9,327.2,489.76,375.98,81.18,56.71,78.86,114.51,41.81,Low basal,3.05205862764127,0.933392587476968,5.30554641999633,1.46530862711376
Merged-chr2-93458508-1,chr2,93458395,93458622,+,763.375,.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NR_040532, intron 2 of 4)","intron (NR_040532, intron 2 of 4)",3343,NM_001271461,12521,Mm.4261,NM_007656,ENSMUSG00000027215,Cd82,AA682076|AL023070|C33|IA4|Kai1|Tspan27,CD82 antigen,protein-coding,5.38,7.05,4.04,6.48,14.94,8.59,13.16,12.6,4.92,27.06,50.01,87.5,108.89,53,70.91,0,20.48,38.77,6.71,26.04,26.44,47.32,31.46,105.55,65.79,35.47,131.44,104.7,116.57,189.66,104.51,Equal basal,2.62204671056739,3.44629566816819,4.23959215181448,3.99862408450623
Merged-chr5-100617026-9,chr5,100616738,100617381,+,761.421265,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,PB1D10|SINE|Alu,-44854,NM_139198,231507,Mm.34609,NM_139198,ENSMUSG00000029322,Plac8,C15|D5Wsu111e,placenta-specific 8,protein-coding,19.44,23.39,3.37,11.65,19.18,18.7,17.21,12.29,39.36,4.51,72.74,22.82,38.72,17.67,110.8,22.47,39.63,61.58,10.06,28,26.44,256.29,251.68,197.02,171.78,326.32,286.08,370.83,257.14,221.86,167.22,Equal basal,3.57817035784823,3.86279161680304,5.01532667695624,4.21089873448795
Merged-chr1-138327549-1,chr1,138327381,138327718,+,760,.//peakIDR//BALBCJ_F0_LPS.idr,Intergenic,Intergenic,53811,NM_177397,338375,Mm.114424,NM_177397,ENSMUSG00000026394,Atp6v1g3,-,"ATPase, H+ transporting, lysosomal V1 subunit G3",protein-coding,1.65,2.88,2.36,4.03,5.45,7.58,5.06,5.99,0,0,0,0,0,0,0,0,20.48,37.63,4.47,7.16,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,1.72503771041888,2.52710461016856,4.2190261669405,3.12917781992214
Merged-chr5-77245706-4,chr5,77245482,77245917,+,751,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-19795,NM_011263,19712,Mm.28840,NM_011263,ENSMUSG00000029249,Rest,2610008J04Rik|AA407358|NRSF|REST4,RE1-silencing transcription factor,protein-coding,9.52,7.05,6.06,9.11,19.79,7.58,17.21,10.08,0,0,0,0,0,0,0,0,30.38,43.34,12.3,30.6,31.73,0,0,0,0,0,0,0,0,0,0,Equal basal,3.0395829459558,3.51264188052077,4.58610887186039,4.4259250197615
Merged-chr8-80950787-6,chr8,80950195,80951190,+,749,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,MT2A|LTR|ERVL,64214,NM_027554,74841,Mm.246018,NM_027554,ENSMUSG00000038250,Usp38,4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891,ubiquitin specific peptidase 38,protein-coding,10.34,20.5,11.11,18.93,15.55,20.72,9.11,17.64,83.64,297.7,50.01,152.17,60.5,92.74,57.62,112.37,45.57,71.85,6.15,13.02,18.13,394.29,615.73,302.57,745.6,418.54,139.17,205.05,140.57,150.29,125.42,Equal basal,3.8465809140111,3.75381489690769,5.22123276922984,3.48032933235943
Merged-chr13-59818487-4,chr13,59818329,59818700,+,747.125,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_153538, intron 2 of 27)","intron (NM_153538, intron 2 of 27)",4633,NM_153538,214290,Mm.233082,NM_153538,ENSMUSG00000035248,Zcchc6,6030448M23Rik|AA420405,"zinc finger, CCHC domain containing 6",protein-coding,7.03,7.69,10.1,10.95,10.9,16.17,13.16,8.82,0,0,0,0,0,0,0,0,25.76,60.44,10.06,13.67,18.89,0,0,0,0,0,0,0,0,0,0,Equal basal,3.18760788803525,3.45070384549536,4.7044533649234,3.73661130005461
Merged-chr14-65374211-5,chr14,65374022,65374383,+,742.626648,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F1_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_199029, intron 1 of 9)","intron (NM_199029, intron 1 of 9)",15526,NM_199029,380912,Mm.270087,NM_199029,ENSMUSG00000034522,Zfp395,BC053701|Gm910,zinc finger protein 395,protein-coding,10.34,9.61,4.38,7.36,9.49,7.58,8.1,7.25,59.04,49.62,31.82,76.08,14.52,30.91,26.59,59.93,25.76,34.21,5.59,7.81,6.04,185.32,148.31,105.55,58.48,134.78,231.96,122.16,54.86,78.72,83.61,Equal basal,2.97496834762013,2.90116660677868,4.30974543337615,2.76057759374309
Merged-chr1-138983383-5,chr1,138982991,138983822,+,740.400024,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_181347, intron 1 of 20)","intron (NM_181347, intron 1 of 20)",5749,NR_108103,78229,Mm.437838,NR_108103,ENSMUSG00000104900,4930596I21Rik,-,RIKEN cDNA 4930596I21 gene,ncRNA,7.45,6.41,10.1,17.17,21.41,16.68,15.69,12.92,0,0,0,0,0,0,0,0,35.01,84.39,13.41,42.32,42.31,0,0,0,0,0,0,0,0,0,0,Equal basal,3.32118941310399,3.8396378713702,5.15077323788228,4.74896964851859
Merged-chr15-77798787-3,chr15,77798651,77799005,+,740.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_022410, intron 3 of 40)","intron (NM_022410, intron 3 of 40)",-41818,NM_001357895,239552,Mm.125650,NM_001081970,ENSMUSG00000056656,Apol8,9830006J20Rik|APOL-II|Apol2,apolipoprotein L 8,protein-coding,7.03,8.33,6.06,7.1,7.88,7.58,2.53,7.56,0,0,0,0,0,0,0,0,40.29,54.74,3.91,14.97,19.64,0,0,0,0,0,0,0,0,0,0,Equal basal,2.90782907220552,2.50595859647128,4.94444330966515,3.38817615972646
Merged-chr8-39635594-3,chr8,39635376,39635756,+,739.888916,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001113326, intron 1 of 9)","intron (NM_001113326, intron 1 of 9)",7112,NM_031195,20288,Mm.239291,NM_031195,ENSMUSG00000025044,Msr1,MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr,macrophage scavenger receptor 1,protein-coding,5.79,4.49,2.36,4.47,3.84,1.52,1.52,9.77,19.68,0,90.92,26.63,24.2,26.5,48.75,22.47,30.38,60.44,2.24,11.07,13.6,31.54,22.47,56.29,51.17,156.07,27.06,52.35,68.57,60.83,111.48,Equal basal,2.22850676674135,1.76413705725237,4.81792347886097,2.8781293230929
Merged-chr6-136717675-7,chr6,136717031,136717971,+,736.573975,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F1_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_145067, intron 18 of 25)",MER2|DNA|TcMar-Tigger,-55608,NM_025806,66857,Mm.3311,NM_025806,ENSMUSG00000030214,Plbd1,1100001H23Rik,phospholipase B domain containing 1,protein-coding,2.9,1.28,6.39,6.83,38.37,39.42,43.53,40.02,86.1,31.57,77.29,45.65,82.27,123.66,137.4,149.83,13.21,37.63,27.39,37.11,25.69,138,62.92,214.61,84.06,85.13,367.26,270.49,219.43,289.85,341.41,High basal,2.13494195164035,5.10239198585518,3.92754512757814,4.78859717464901
Merged-chr6-134700082-2,chr6,134699838,134700275,+,734.142822,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,"intron (NM_001170479, intron 3 of 3)","intron (NM_001170479, intron 3 of 3)",59116,NM_026371,67774,Mm.41892,NM_026371,ENSMUSG00000042992,Borcs5,5830457J20Rik|AW124643|Loh12cr1,BLOC-1 related complex subunit 5,protein-coding,1.65,0,0,3.68,3.03,3.54,5.57,4.73,31.98,0,27.28,30.43,31.46,53,26.59,33.71,17.17,37.63,2.79,3.91,15.11,118.29,193.26,123.14,153.51,127.69,65.72,100.34,65.14,25.05,83.61,Equal basal,0.872076235517575,2.04237032379545,4.10086394573284,2.59281541023158
Merged-chr4-59594689-7,chr4,59594358,59594949,+,729.571411,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_001301367, intron 5 of 11)","intron (NM_001301367, intron 5 of 11)",13090,NM_024255,72479,Mm.272905,NM_024255,ENSMUSG00000028383,Hsdl2,2610207I16Rik,hydroxysteroid dehydrogenase like 2,protein-coding,9.52,8.97,10.77,13.67,28.47,33.36,37.46,19.53,29.52,0,0,41.85,24.2,0,26.59,29.97,31.04,39.92,19.56,28,52.88,43.37,22.47,59.81,14.62,0,81.18,174.51,72,103.77,125.42,High basal,3.43429059922135,4.6383827016375,4.54409192108856,4.83547053929519
Merged-chr1-180434332-4,chr1,180434095,180434494,+,728.541687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"3' UTR (NM_001081227, exon 4 of 4)","3' UTR (NM_001081227, exon 4 of 4)",49210,NM_001081227,381310,Mm.44791,NM_001081227,ENSMUSG00000053963,Stum,6330403A02Rik|Gm10001|R75555,mechanosensory transduction mediator,protein-coding,7.86,6.09,5.72,7.36,10.7,14.66,12.15,12.92,0,0,0,0,0,0,0,0,24.44,29.65,15.09,18.23,27.2,0,0,0,0,0,0,0,0,0,0,Equal basal,2.81003150318305,3.48640534090012,4.17604944676265,4.21310144411741
Merged-chr2-166116129-2,chr2,166115995,166116274,+,727.833313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_001252579, intron 3 of 20)","intron (NM_001252579, intron 3 of 20)",39151,NM_001355619,72043,Mm.1011,NM_028072,ENSMUSG00000006800,Sulf2,2010004N24Rik|AU020235|MSulf-2|mKIAA1247,sulfatase 2,protein-coding,2.9,1.92,2.02,2.89,12.72,10.11,11.14,6.62,0,0,0,0,0,0,0,0,14.53,12.54,11.74,20.18,24.93,0,0,0,0,0,0,0,0,0,0,High basal,1.65150934713579,3.17898048389328,3.2605541227331,4.10461858692364
Merged-chr10-68063794-6,chr10,68063479,68064090,+,727.516663,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Charlie2b|DNA|hAT-Charlie,84214,NM_001359319,170799,Mm.209844,NM_133244,ENSMUSG00000037846,Rtkn2,B130039D23Rik|Mbf|Plekhk1,rhotekin 2,protein-coding,4.14,11.85,7.4,13.58,10.5,13.14,33.41,11.34,49.2,0,63.65,68.47,45.98,0,44.32,22.47,36.99,55.88,9.5,21.49,23.42,394.29,139.33,204.06,307.01,163.16,150.77,122.16,37.71,53.68,125.42,Equal basal,3.14937812213145,3.76576528442594,4.89928955230017,4.00941566752371
Merged-chr15-60629118-3,chr15,60628934,60629307,+,727.166687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-193845,NR_030696,320469,Mm.230853,NM_177166,NA,9930014A18Rik,-,RIKEN cDNA 9930014A18 gene,ncRNA,3.31,10.89,10.1,6.13,6.66,7.08,7.09,4.73,0,0,0,0,0,0,0,0,37.65,38.77,2.79,13.67,15.87,0,0,0,0,0,0,0,0,0,0,Equal basal,2.9149967419661,2.60912958266267,4.65783392362614,3.1205218160701
Merged-chr5-53405190-3,chr5,53404892,53405405,+,724.555542,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,138042,NM_001145433,66278,Mm.27900,NM_001145433,ENSMUSG00000061461,Smim20,1110067B18Rik|1810013D10Rik|N28078,small integral membrane protein 20,protein-coding,5.38,5.77,6.73,9.81,18.58,14.15,14.17,15.12,0,0,0,0,0,0,0,0,29.72,59.3,7.83,22.14,37.77,0,0,0,0,0,0,0,0,0,0,Equal basal,2.84831334162672,3.78611502716277,4.78942635414534,4.15595974486792
Merged-chr5-138705420-4,chr5,138705189,138705655,+,721.450012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-49659,NM_030565,80752,Mm.320355,NM_030565,ENSMUSG00000025854,Fam20c,C76981|DMP-4|DMP4|GEF-CK|mKIAA4081,"family with sequence similarity 20, member C",protein-coding,5.79,10.25,10.1,10.16,3.23,0,0,2.52,17.22,27.06,4.55,22.82,14.52,0,0,11.24,54.16,82.11,0.56,2.6,0,145.89,188.76,70.37,208.33,78.03,30.93,61.08,10.29,0,0,Low basal,3.21660962549546,0.926482384159102,5.4364906942458,0.797181934720648
Merged-chr1-175639973-4,chr1,175639789,175640158,+,720.309509,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,"intron (NM_133809, intron 4 of 14)","intron (NM_133809, intron 4 of 14)",7780,NM_133809,98256,Mm.27217,NM_133809,ENSMUSG00000039783,Kmo,AI046660,kynurenine 3-monooxygenase (kynurenine 3-hydroxylase),protein-coding,9.1,5.13,9.09,7.36,8.48,4.55,9.11,4.73,54.12,49.62,45.46,22.82,62.92,39.75,17.73,26.22,30.38,29.65,2.79,10.42,17.38,110.4,116.85,84.44,69.44,92.22,135.31,82.89,75.43,85.88,90.58,Equal basal,2.9922303140529,2.60466720102412,4.32551178726616,3.04312614155334
Merged-chr6-127268234-5,chr6,127268010,127268420,+,718.666687,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,39752,NR_073373,232386,Mm.257367,NR_073373,ENSMUSG00000107153,Gm38404,D130058E03,"predicted gene, 38404",ncRNA,10.34,10.25,8.08,7.1,12.32,16.17,12.15,9.77,12.3,0,0,22.82,16.94,0,0,22.47,31.7,53.6,13.41,22.79,25.69,31.54,31.46,7.04,21.93,0,42.53,104.7,10.29,60.83,90.58,Equal basal,3.19396213760007,3.48158544785193,4.76330563855908,4.23386799251808
Merged-chr1-60863038-2,chr1,60862912,60863167,+,714.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//BALBCJ_F1_LPS.idr,Intergenic,Intergenic,-45986,NM_009843,12477,Mm.390,NM_009843,ENSMUSG00000026011,Ctla4,Cd152|Ctla-4|Ly-56,cytotoxic T-lymphocyte-associated protein 4,protein-coding,2.48,0.96,0.34,2.19,1.82,3.54,1.01,0.63,4.92,18.04,0,15.22,0,13.25,0,0,33.69,30.79,2.24,1.95,0.76,78.86,76.4,10.55,51.17,70.94,30.93,13.09,3.43,3.58,0,Equal basal,0.977726028498683,1.1221013052131,4.42255513271826,1.31459836290492
Merged-chr8-109681664-3,chr8,109681542,109681793,+,689.333313,.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NR_155034, intron 4 of 10)",MTB_Mm|LTR|ERVL-MaLR,11627,NR_155034,71955,Mm.290036,NM_028018,ENSMUSG00000031729,Ist1,2400003C14Rik|AW536298|mKIAA0174,increased sodium tolerance 1 homolog (yeast),protein-coding,2.48,2.24,3.7,4.38,13.53,11.62,8.1,5.99,0,4.51,0,0,4.84,0,0,22.47,17.17,36.49,5.03,11.72,24.93,0,0,0,0,0,0,0,0,0,0,Equal basal,1.90976964306405,3.0979548136435,4.07969436320422,3.49256443730629
Merged-chr13-35947737-5,chr13,35947387,35948049,+,662.700012,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,Intergenic,-20188,NM_029628,76487,Mm.44745,NM_029628,ENSMUSG00000050423,Ppp1r3g,1600032L17Rik,"protein phosphatase 1, regulatory (inhibitor) subunit 3G",protein-coding,8.27,8.33,9.42,7.27,10.7,9.1,12.15,12.29,0,0,0,3.8,2.42,0,0,0,22.46,55.88,6.15,31.25,20.4,27.6,80.9,52.77,51.17,78.03,69.59,100.34,58.28,89.46,202.06,Equal basal,3.12677139590952,3.32523209742664,4.55595808410135,3.9273159596834
Merged-chr13-64403589-4,chr13,64403311,64403841,+,651.924988,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//C57BL6J_F0_Control.idr|.//peakIDR//BALBCJ_F1_LPS.idr|.//peakIDR//C57BL6J_F1_LPS.idr,Intergenic,RLTR23|LTR|ERV1,-28977,NM_053180,105278,Mm.74982,NM_053180,ENSMUSG00000021483,Cdk20,4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42,cyclin-dependent kinase 20,protein-coding,7.03,7.69,8.08,10.87,14.54,7.08,12.15,7.88,9.84,54.13,50.01,15.22,21.78,0,57.62,41.2,25.76,58.16,2.79,7.16,8.31,141.95,170.79,91.48,138.89,134.78,19.33,30.54,10.29,93.04,104.51,Equal basal,3.11488505686012,3.20152935682961,4.67752281179219,2.57102093152363
Merged-chr5-148820607-2,chr5,148820430,148820810,+,644,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,42657,NR_131106,78015,Mm.243839,NR_131106,ENSMUSG00000085740,4930505K14Rik,-,RIKEN cDNA 4930505K14 gene,ncRNA,2.9,7.05,4.04,4.38,10.5,7.58,13.16,12.6,0,0,0,0,14.52,0,0,0,19.15,35.35,7.27,17.58,11.33,0,0,0,0,0,0,0,0,0,0,Equal basal,2.31470254929613,3.28953058514797,4.13107713274407,3.48026333293621
Merged-chr19-25031376-1,chr19,25031266,25031487,+,643,.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_028785, intron 1 of 47)","intron (NM_028785, intron 1 of 47)",31847,NM_028785,76088,Mm.102485,NM_028785,ENSMUSG00000052085,Dock8,1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977,dedicator of cytokinesis 8,protein-coding,3.72,3.2,3.37,2.19,2.42,1.52,0,2.21,0,0,22.73,22.82,0,0,17.73,0,15.19,41.06,1.12,1.3,2.27,3.94,8.99,0,0,0,0,0,0,0,0,Equal basal,1.91321983408057,1.00226770681886,4.07941582231572,1.23148034884175
Merged-chr13-85359807-2,chr13,85359583,85359993,+,633.5,.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,Intergenic,Intergenic,-70302,NM_145452,218397,Mm.259653,NM_145452,ENSMUSG00000021549,Rasa1,Gap|RasGAP|Rasa,RAS p21 protein activator 1,protein-coding,8.69,0.64,3.03,6.13,9.29,12.64,5.06,9.77,4.92,0,4.55,0,9.68,0,4.43,14.98,23.78,27.37,7.27,20.18,26.44,23.66,26.97,3.52,32.89,78.03,54.12,65.44,48,64.41,69.68,Equal basal,2.10238235721321,3.03570439718255,4.10304778584416,3.91765656371964
Merged-chr2-166651869-3,chr2,166651716,166652021,+,604.833313,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr|.//peakIDR//C57BL6J_F0_LPS.idr,"intron (NM_177782, intron 1 of 39)","intron (NM_177782, intron 1 of 39)",61964,NM_177782,277360,Mm.34420,NM_177782,ENSMUSG00000039621,Prex1,G630042G04|P-REX1|Setd6,"phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1",protein-coding,6.62,7.37,2.02,6.57,6.06,12.13,5.06,9.14,0,0,0,0,0,0,0,0,33.69,23.95,6.71,15.63,17.38,0,0,0,0,0,0,0,0,0,0,Equal basal,2.52231739951062,2.8818255907198,4.25255588140689,3.57920858848066
Merged-chr8-84921677-2,chr8,84921546,84921802,+,575,.//peakIDR//BALBCJ_F0_Control.idr|.//peakIDR//BALBCJ_F0_LPS.idr,"intron (NM_019945, intron 12 of 25)","intron (NM_019945, intron 12 of 25)",8339,NR_103491,100503676,Mm.437155,NR_103491,ENSMUSG00000003812,Gm38426,-,"predicted gene, 38426",ncRNA,3.31,5.45,2.02,4.03,7.27,1.52,5.06,11.66,17.22,27.06,0,22.82,9.68,0,0,0,27.08,25.09,6.15,22.14,12.09,31.54,49.44,31.66,18.27,0,77.32,34.9,13.71,0,41.81,Equal basal,2.0825766941772,2.3725858287671,4.13328110130252,3.53925158220925