menicgiulia/MLFoodProcessing-v1.0.0.zip
menicgiulia-MLFoodProcessing-f9a9775
.gitattributes
656 Bytes
.gitignore
70 Bytes
Analysis20152016.mlx
78.6 kB
Compare Nutrients Profiles
Apple_NHS_FNDDS_nuts_compare_53P.pdf
130 Bytes
BeefNoodleSoup_home_vs_restaurant.html.pdf
130 Bytes
FNDDS201520165foldsSMOTE_62Panel.csv
133 Bytes
FNDDS201520165foldsSMOTE_62Panel.xlsx
132 Bytes
FNDDS_2009_classified_with_58_nuts.csv
132 Bytes
FNDDS_2009_classified_with_62_nuts.csv
132 Bytes
FNDDS_2011_classified_with_58_nuts.csv
132 Bytes
FNDDS_2011_classified_with_62_nuts.csv
132 Bytes
FNDDS_2015_Weighted_Consumption_WWEIA_nuts.csv
132 Bytes
FNDDS_2015_classified_with_58_nuts.csv
132 Bytes
FNDDS_2015_ingredients_ManualNOVA_FoodProX_62_CCNR2019.xlsx
132 Bytes
FNDDS_food_ingreds_2009_NOVA.xls
133 Bytes
FNDDS_food_ingreds_2011_NOVA.xls
133 Bytes
FNDDS_food_ingreds_2015_NOVA.xls
133 Bytes
Investigate Nutrient Difference.ipynb
360.2 kB
Lasagna.html.pdf
130 Bytes
Lasagna_ALL_FOUR.html.pdf
130 Bytes
Lasagna_homeRecipe_fromRestaurant.html.pdf
130 Bytes
Lasagna_home_vs_restaurant.html.pdf
130 Bytes
Lasagna_meat_and_canned_source_FNDDS2009.html.png
5.7 MB
Lasagna_meat_and_canned_source_FNDDS2009P99.html.png
5.2 MB
Lasagna_meat_and_canned_source_FNDDS2011.html.png
5.7 MB
Lasagna_meat_and_canned_source_FNDDS2015+2009.html.png
5.7 MB
Lasagna_meat_vs_canned.html.pdf
130 Bytes
POSTS_Cereals_vs_Ingred_UnprocessedWheatBran.html.pdf
130 Bytes
POSTS_Cereals_vs_Ingred_UnprocessedWheatBran_source_FNDDS2009P99.html.png
4.9 MB
POST_four_cereals.html.pdf
130 Bytes
POST_four_cereals_AND_UnprocessedWheatBran.html.pdf
130 Bytes
POST_four_cereals_AND_UnprocessedWheatBran_source_FNDDS2009P99.html.png
5.4 MB
POST_four_cereals_AND_UnprocessedWheatBran_source_FNDDS2015+2011.html
3.6 MB
POST_four_cereals_AND_UnprocessedWheatBran_source_FNDDS2015+2011.html.png
4.2 MB
RFFNDDScleanedwithsalt_additionallab_PREDICTION12_5folds_SMOTE.csv
132 Bytes
RFFNDDScleanedwithsalt_additionallab_PREDICTION58_5folds_SMOTE.csv
133 Bytes
RFFNDDScleanedwithsalt_additionallab_PREDICTION62_5folds_SMOTE.csv
133 Bytes
RFFNDDScleanedwithsalt_additionallab_PREDICTION99_5folds_SMOTE.csv
133 Bytes
Ready-to-eat cereal.html
3.6 MB
Ready-to-eat cereal.html.pdf
130 Bytes
Ready-to-eat cereal.html.png
1.6 MB
Salsa_hommade_commercial.html.pdf
130 Bytes
apple_NHS_FNDDS_nuts_compare_53.csv
129 Bytes
cereal_POST_four_examples.pdf
130 Bytes
cereal_post_ShreddedWheat_vs_WheatBran.pdf
130 Bytes
compare_POST_four_cereals_vs_UnprocessedWheatBran.html.pdf
130 Bytes
compare_POST_four_cereals_vs_UnprocessedWheatBran_source_FNDDS2009P99.html.png
5.3 MB
compare_POST_four_cereals_vs_UnprocessedWheatBran_source_FNDDS2015+2009.html.png
4.2 MB
compare_POST_four_cereals_vs_UnprocessedWheatBran_source_FNDDS2015+2011.html
3.6 MB
compare_POST_four_cereals_vs_UnprocessedWheatBran_source_FNDDS2015+2011.html.png
4.2 MB
raw_foods_FPro_FNDDS_2015_62p.pdf
130 Bytes
wheat_ingredients_from_FNDDS_2011.html.pdf
130 Bytes
DietaryPatterns_and_Substitution_SISections_3_5.ipynb
1.0 MB
EWAS.xlsx
168.0 kB
EWAS_analysis_Patel_variables.R
28.0 kB
EWAS_analysis_base_functions.R
5.0 kB
EWAS_merge_regression_analysis_from_R.ipynb
84.7 MB
EWAS_modules_num_dict.R
1.6 kB
EWAS_organize_all_regression_modules_into_single_table.R
14.8 kB
EWAS_survey_descriptive_stats.R
9.3 kB
EWAS_survey_regression_on_NHANES_1999_2006.R
25.2 kB
Ensemble_Classifier.ipynb
89.3 kB
Exposome category variable.xlsx
130 Bytes
Exposome_SISection4.ipynb
703.4 kB
FNDDS_base.py
127.7 kB
FigurePanel_2_20092010.mlx
437.4 kB
FiguresSubstitutionModel.mlx
499.2 kB
FoodProXonFNDDS.xlsx
34.9 MB
Hierarchical Clustering of Nutrients
2015-2016 FNDDS Category Frequencies - BR.xlsx
130 Bytes
FNDDS0910_99Nutrients_5folds_SMOTE_RFFNDDScleanedwithsalt_additionallab_PREDICTION99_5folds_SMOTE.csv
133 Bytes
Hierarchical Clustering of Nutrients.ipynb
962.2 kB
RFFNDDS_2009_10_recom_Giulia_Raws_salt_99_nuts.csv
132 Bytes
cluster_analysis.py
21.3 kB
data
FNDDS
TreeCut
DTC_log__20__metric_euclidean__method_ward__panel_12_NOVA_labels.png
6.4 kB
DTC_log__20__metric_euclidean__method_ward__panel_12_NOVA_truth_labels.png
3.5 kB
DTC_log__20__metric_euclidean__method_ward__panel_12_clustermap.png
75.6 kB
DTC_log__20__metric_euclidean__method_ward__panel_12_clusters_labels.png
5.9 kB
DTC_log__20__metric_euclidean__method_ward__panel_62_NOVA_labels.png
6.4 kB
DTC_log__20__metric_euclidean__method_ward__panel_62_NOVA_truth_labels.png
3.5 kB
DTC_log__20__metric_euclidean__method_ward__panel_62_clustermap.png
184.7 kB
DTC_log__20__metric_euclidean__method_ward__panel_62_clusters_labels.png
6.9 kB
DTC_log__20__metric_euclidean__method_ward__panel_99_FNDDS_Level2_Cats.png
193.8 kB
DTC_log__20__metric_euclidean__method_ward__panel_99_NOVA_labels.png
6.3 kB
DTC_log__20__metric_euclidean__method_ward__panel_99_NOVA_truth_labels.png
3.4 kB
DTC_log__20__metric_euclidean__method_ward__panel_99_clustermap.png
441.4 kB
DTC_log__20__metric_euclidean__method_ward__panel_99_clusters_labels.png
11.5 kB
dynamic_cut_clusters_nutPanel_12.csv
133 Bytes
dynamic_cut_clusters_nutPanel_62.csv
133 Bytes
dynamic_cut_clusters_nutPanel_99.csv
133 Bytes
Number of Nutrients Distribution USDA SR Legacy Branded Products.ipynb
112.3 kB
Open_Food_Facts_SISection6.ipynb
27.5 kB
Permutation_Feature_Importance_FProX_SISection2_2.ipynb
1.2 MB
Plots for SI - Water Consumption - FPro HEI Correlation - NOVA Consumption.ipynb
2.7 MB
Preliminary_Train_Test.ipynb
3.0 MB
README.md
187 Bytes
ShapAnalysisWCrossValidation__SISection2_2.ipynb
986.9 kB
Stability_Analysis.ipynb
50.9 kB
WWEIAanalysis_Figure2d.ipynb
256.8 kB
analyze_reg.py
79.4 kB
foodome_base.py
1.4 kB
functions_statistical_performance.py
14.1 kB
generic_exposureEWAS.m
676 Bytes
input_data
ALL_regressions.mat
219.4 kB
EWAS_VarDescription.xlsx
131 Bytes
EWAS_exposome_CCNR_selection_modules.xlsx
130 Bytes
EWAS_modules_of_interest_031021.csv
129 Bytes
FNDDS20152016.mat
1.4 MB
FNDDS201520165foldsSMOTE.mat
3.0 MB
FNDDS_1999_2006_Weighted_Consumption_WWEIA_nuts_FPro.csv
14.1 MB
FNDDS_2009-10_Training_Data.csv
6.6 MB
FNDDS_2015-16.csv
7.1 MB
FNDDS_2015-16_62Nutrients_ensemble_5folds.csv
14.6 MB
FNDDS_nutrients_precision.csv
2.5 kB
FoodData_Central_2020-03-31.accdb
134 Bytes
NHANES_1999_2006_all_individual_foods.csv
134 Bytes
NHANES_2003_2018_FoodSource_Consumed.csv
134 Bytes
NOVAmanualoutput2015.mat
709.3 kB
NutDesc.xlsx
130 Bytes
OpenFoodFacts_10nutrients.csv
133 Bytes
RLambdaBoxCox.mat
13.8 kB
USDA Raw Data
FNDDS
2001_2002
FNDDS2001_2002.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
fndds_doc.pdf
132 Bytes
2003_2004
FNDDS2003_2004.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
fndds2_doc.pdf
132 Bytes
2005_2006
FNDDS2005_2006.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
fndds3_doc.pdf
131 Bytes
2007_2008
FNDDS2007_2008.mdb
133 Bytes
FNDDS4_ACCESS.EXE
3.6 MB
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
fndds4_doc.pdf
131 Bytes
2007_2010 Flavonoid
FlavDesc.pkl
129 Bytes
FlavDesc.xlsx
130 Bytes
FlavVal.pkl
133 Bytes
FlavVal.xlsx
132 Bytes
FlavonoidDB_documentation_0710.pdf
131 Bytes
Flavonoid_Database_0710.mdb
133 Bytes
MainFoodDesc Flavonoid 2007-2010.xlsx
132 Bytes
MainFoodDesc.pkl
131 Bytes
2009_2010
FNDDS 2009-2010 Database Diagram path to ingred weight.png
147.5 kB
FNDDS 2009-2010 Database Diagram.PNG
131.3 kB
FNDDS2009_2010.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
NutDesc.xlsx
130 Bytes
NutDesc_2009_2010.xlsx
130 Bytes
Nutrient_Values_For_Ingredients_Not_Released_In_SR24.xlsx
130 Bytes
fndds5_doc 2009_2010.pdf
131 Bytes
2011_2012
Discontinued_Codes_between_FNDDS_ 5_(2009-2010)_and_FNDDS_2011-2012.xlsx
130 Bytes
FNDDS2011_2012.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
Nutrient_Values_For_Ingredients_Not_Released_In_SR26.xlsx
130 Bytes
fndds_2011_2012_doc.pdf
131 Bytes
2013_2014
Discontinued_Codes_between_FNDDS_2011-2012_and_FNDDS_2013-2014.xlsx
130 Bytes
FNDDS2013_2014.mdb
133 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSSRLinks.pkl
132 Bytes
FoodWeights.pkl
132 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
2015_2016
2015-2016 FNDDS At A Glance - FNDDS Ingredients.xlsx
132 Bytes
2015-2016 FNDDS At A Glance - FNDDS Nutrient Values.xlsx
132 Bytes
2015-2016 FNDDS At A Glance - Foods and Beverages.xlsx
131 Bytes
2015-2016 FNDDS At A Glance - Ingredient Nutrient Values.xlsx
132 Bytes
2015-2016 FNDDS At A Glance - Portions and Weights.xlsx
132 Bytes
2015_2016_FNDDS_Doc.pdf
132 Bytes
Discontinued_Food_Codes_between_FNDDS_2013-2014_and_FNDDS_2015-2016_7_19_18.xlsx
130 Bytes
FNDDS 2015-2016 Database Diagram path to ingred weight.PNG
202.8 kB
FNDDS 2015-2016 Database Diagram.PNG
180.6 kB
FNDDS 2015-2016 Main Food Desc and Nut.xlsx
133 Bytes
FNDDS2015_2016.mdb
133 Bytes
FNDDSIngred.pkl
132 Bytes
FNDDSNutVal.pkl
133 Bytes
FNDDSNutVal.xlsx
133 Bytes
FNDDS_2015-2016_ACCESS.EXE
8.0 MB
FoodWeights.pkl
132 Bytes
INGREDNutVal.pkl
133 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
NutDesc_2015_2016.xlsx
130 Bytes
2017_2018
2017_2018_FNDDS_Doc.pdf
132 Bytes
FNDDS2017_2018.mdb
133 Bytes
FNDDSIngred.pkl
132 Bytes
FNDDSNutVal.pkl
133 Bytes
FoodWeights.pkl
132 Bytes
INGREDNutVal.pkl
133 Bytes
MainFoodDesc.pkl
131 Bytes
NutDesc.pkl
129 Bytes
raw_food_df_from_FNDDS_2015_2016.feather
130 Bytes
special databases
FDB-EXP.pdf
131 Bytes
FDB-EXP_R01-1.accdb
133 Bytes
FDB_EXP_DD.pdf
131 Bytes
JSON metadata for USDA's Expanded Flavonoid Database.json
1.4 kB
usdas-expanded-flavonoid-database.zip
131 Bytes
FNDDS Categories
2001 FNDDS Category Tree.xlsx
130 Bytes
2003 FNDDS Category Tree.xlsx
130 Bytes
2005 FNDDS Category Tree.xlsx
130 Bytes
2009 FNDDS Category by Frequency Tree - BR Fixed Cat 11.csv
130 Bytes
2009 FNDDS Category by Frequency Tree - Color Coded.xlsx
130 Bytes
2009 FNDDS Category by Frequency.csv
130 Bytes
2009-2010 FNDDS Category Frequencies - BR.xlsx
130 Bytes
2009-2010 FNDDS Category Frequencies.xlsx
132 Bytes
2015-2016 FNDDS Category Frequencies - BR.xlsx
130 Bytes
2015-2016 FNDDS Category Frequencies.xlsx
132 Bytes
2015-2016 FNDDS Category by Frequency Tree.csv
130 Bytes
2015-2016 FNDDS Category by Frequency Tree.xlsx
130 Bytes
2015-2016 FNDDS Category by Frequency.csv
130 Bytes
2017-2018 FNDDS Category Tree.xlsx
130 Bytes
image (10).png
23.4 kB
image (11).png
112.2 kB
image (12).png
743.4 kB
image (13).png
327.5 kB
FPED
2009_2010
FPED_0910.mdb
132 Bytes
FPED_0910.pdf
131 Bytes
FPED_0910_access.exe
387.9 kB
FPED_2009_10_Fact_Sheet.pdf
131 Bytes
FPED_DR1TOT_0910_sas.exe
906.5 kB
FPID_0910.mdb
132 Bytes
fped_dr1tot_0910.sas7bdat
2.5 MB
FoodData_Central
2020-03-31
Download_Field_Descriptions_Apr2020.pdf
131 Bytes
FoodData_Central_2020-03-31.accdb
134 Bytes
branded_food.pkl
134 Bytes
food.pkl
133 Bytes
food_attribute.pkl
132 Bytes
food_category.pkl
129 Bytes
food_nutrient.pkl
134 Bytes
nutrient.pkl
130 Bytes
sr_legacy_food.pkl
131 Bytes
survey_fndds_food.pkl
131 Bytes
wweia_food_category.pkl
129 Bytes
NDI
NHANES_1999_2000_MORT_2015_PUBLIC.dat
488.3 kB
NHANES_2011_2012_MORT_2015_PUBLIC.dat
478.0 kB
NHANES_2013_2014_MORT_2015_PUBLIC.dat
498.6 kB
R_ReadInProgramAllSurveys.R
6.5 kB
NHANES
2009_2010
DR1IFF_F_2009_2010.XPT
102.7 MB
DR1IFF_F_2009_2010.feather
134 Bytes
DR2IFF_F_2009_2010.XPT
87.8 MB
DR2IFF_F_2009_2010.feather
133 Bytes
2011_2012
DR1IFF_G_2011_2012.XPT
86.0 MB
DR1IFF_G_2011_2012.feather
133 Bytes
DR2IFF_G_2011_2012.XPT
76.2 MB
DR2IFF_G_2011_2012.feather
133 Bytes
2013_2014
DR1IFF_H_2013_2014.XPT
88.3 MB
DR1IFF_H_2013_2014.feather
133 Bytes
DR2IFF_H_2013_2014.XPT
75.7 MB
DR2IFF_H_2013_2014.feather
133 Bytes
2015_2016
DEMO_I_2015_2016.XPT
3.8 MB
DEMO_I_2015_2016.feather
132 Bytes
DR1IFF_I_2015_2016.XPT
81.6 MB
DR1IFF_I_2015_2016.feather
133 Bytes
DR2IFF_I_2015_2016.XPT
67.7 MB
DR2IFF_I_2015_2016.feather
133 Bytes
USDA_SR
sr15
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
SR15_doc.pdf
130 Bytes
sr15.mdb
133 Bytes
sr15_doc.wpd
234.9 kB
sr15acc.zip
133 Bytes
sr16
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr16-1acc.zip
133 Bytes
sr16-1dc.pdf
131 Bytes
sr16.mdb
133 Bytes
sr16_doc.pdf
131 Bytes
sr17
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr17.mdb
133 Bytes
sr17_doc.pdf
131 Bytes
sr17acc.zip
133 Bytes
sr18
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
SR18_doc.pdf
131 Bytes
sr18.mdb
133 Bytes
sr18acc.zip
133 Bytes
sr19
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
SR19_doc.pdf
131 Bytes
sr19.mdb
133 Bytes
sr19acc.zip
133 Bytes
sr20
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
SR20_doc.pdf
131 Bytes
sr20.mdb
133 Bytes
sr20acc.zip
133 Bytes
sr21
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr21.mdb
133 Bytes
sr21_doc.pdf
131 Bytes
sr21db.zip
133 Bytes
sr22
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr22.mdb
134 Bytes
sr22_doc.pdf
131 Bytes
sr22db.zip
133 Bytes
sr23
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr23.mdb
134 Bytes
sr23_doc.pdf
131 Bytes
sr23db.zip
133 Bytes
sr24
DATA_SRC.txt
79.2 kB
Dats_Src.pdf
132 Bytes
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr24.mdb
134 Bytes
sr24_doc.pdf
131 Bytes
sr24db.zip
133 Bytes
sr25
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr25.mdb
134 Bytes
sr25_doc.pdf
131 Bytes
sr25db.zip
133 Bytes
sr26
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr26.mdb
134 Bytes
sr26_doc.pdf
131 Bytes
sr26db.zip
133 Bytes
sr27
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
sr27.accdb
134 Bytes
sr27_doc.pdf
131 Bytes
sr28
FOOD_DES.pkl
132 Bytes
NUTR_DEF.pkl
129 Bytes
NUT_DATA.pkl
133 Bytes
USDA SR 28.JPG
428.1 kB
sr28.accdb
134 Bytes
sr28_doc.pdf
131 Bytes
WWEIA Categories
WWEIA0708_foodcat_FNDDS.xlsx
131 Bytes
WWEIA0910_foodcat_FNDDS.xlsx
131 Bytes
WWEIA1112_foodcat_FNDDS.xlsx
131 Bytes
WWEIA1314_foodcat_FNDDS.xlsx
131 Bytes
WWEIA1516_foodcat_FNDDS.xlsx
131 Bytes
WWEIA1718_foodcat_FNDDS.xlsx
131 Bytes
all_diet_data_1999_2006_58_nuts_single_and_ensemble_FPro.csv
133 Bytes
all_food_datasets_nuts_num.csv
133 Bytes
branded_food.pkl
134 Bytes
colormapmodulesexposome.pkl
129 Bytes
db5foldsSMOTE.mat
2.6 MB
dfimportances.pkl
130 Bytes
dictcolorSHAPvalues.pkl
129 Bytes
exposome_modules.pkl
130 Bytes
fndds4RF.mat
3.0 MB
food.pkl
133 Bytes
food_attribute.pkl
132 Bytes
food_category.pkl
129 Bytes
food_nutrient.pkl
134 Bytes
keyfeaturesNHANEScohorts.mat
5.1 MB
nh_99-06.Rdata
133 Bytes
nhanesDesign_RAW_ALL_dataset_caloric_intake_PSJ1_58_nuts_temp_cohort_all.csv
134 Bytes
nutrient.pkl
130 Bytes
predictions_diffresolution.mat
3.7 MB
reg_ens_WCDPI.csv
130 Bytes
reg_ens_WFDPIRW.csv
130 Bytes
reg_manualNOVA4.csv
130 Bytes
survey_fndds_food.pkl
131 Bytes
tableforsubstitution.mat
3.9 MB
trajectories.mat
133 Bytes
water_consumption_NHANES_1999_2017.csv
129 Bytes
wweia_food_category.pkl
129 Bytes
oddsratioEWAS.m
323 Bytes
output_console
EWAS_survery_desc_stats_ens_min_RWWFDPI_D_cohort_all_fiveP.csv
128 Bytes
EWAS_survery_desc_stats_ens_min_WCDPI_D_cohort_all_fiveP.csv
128 Bytes
README.md
5.1 kB
caloric_intake_PSJ1_58_nuts
IHW_metric_then_cohort
nbins_2__rejected_caloric_intake_FPro.WCDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_FPro.WCDPI.csv.var_desc.xlsx
130 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.RW.csv
129 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.RW.csv.var_desc.xlsx
130 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.csv.var_desc.xlsx
130 Bytes
nbins_2__rejected_caloric_intake_HEI15.csv
129 Bytes
nbins_2__rejected_caloric_intake_HEI15.csv.var_desc.xlsx
130 Bytes
nbins_2__rejected_caloric_intake_ens_FPro.WCDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_ens_FPro.WCDPI.csv.var_desc.xlsx
130 Bytes
nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.RW.csv
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nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.RW.csv.var_desc.xlsx
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nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.csv
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nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.csv.var_desc.xlsx
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nbins_2__rejected_caloric_intake_ens_min_FPro.WCDPI.csv
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nbins_2__rejected_caloric_intake_ens_min_FPro.WCDPI.csv.var_desc.xlsx
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nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.RW.csv
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nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.RW.csv.var_desc.xlsx
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nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.csv
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nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.csv.var_desc.xlsx
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nbins_2__rejected_caloric_intake_manualNOVA4.kcal.csv
129 Bytes
R_svydesign_FULL_nhanes.txt
84.3 kB
R_svydesign_ageDesign_nhanes.txt
84.2 kB
ageDesign_dataset_caloric_intake_PSJ1_58_nuts_cohort_all.csv
133 Bytes
ageDesign_lambda_boxcox_cohort_all.csv
130 Bytes
all
reg_analysis_boxcox_Any_Disease.csv
132 Bytes
reg_analysis_boxcox_Blood_Pressure.csv
131 Bytes
reg_analysis_boxcox_Heavy_Metals.csv
132 Bytes
reg_analysis_boxcox_custom_variables_by_CCNR.csv
133 Bytes
failed_regs.csv
128 Bytes
model_coeff_all_tabs.xlsx
131 Bytes
nbins_2__rejected_caloric_intake_FPro.WCDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.RW.csv
129 Bytes
nbins_2__rejected_caloric_intake_FPro.WFDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_HEI15.csv
129 Bytes
nbins_2__rejected_caloric_intake_ens_FPro.WCDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.RW.csv
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nbins_2__rejected_caloric_intake_ens_FPro.WFDPI.csv
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nbins_2__rejected_caloric_intake_ens_min_FPro.WCDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.RW.csv
129 Bytes
nbins_2__rejected_caloric_intake_ens_min_FPro.WFDPI.csv
129 Bytes
nbins_2__rejected_caloric_intake_manualNOVA4.kcal.csv
129 Bytes
nhanesDesign_RAW_ALL_dataset_caloric_intake_PSJ1_58_nuts_cohort_all.csv
134 Bytes
reg_analysis_boxcox ALL Vars caloric_intake_PSJ1_58_nuts.xlsx
131 Bytes
sample_stats_for_caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_FAILED caloric_intake_PSJ1_58_nuts.xlsx
131 Bytes
vars_regressions_table_FPro.RW.WFDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_FPro.WCDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_FPro.WFDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_HEI-15 caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_FPro.RW.WFDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_FPro.WCDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_FPro.WFDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_min_FPro.RW.WFDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_min_FPro.WCDPI caloric_intake_PSJ1_58_nuts.csv
129 Bytes
vars_regressions_table_ens_min_FPro.WFDPI caloric_intake_PSJ1_58_nuts.csv
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vars_regressions_table_manualNOVA4.Kcal caloric_intake_PSJ1_58_nuts.csv
129 Bytes
output_data
FNDDS_2009-10_12Nutrients_ensemble_5folds.csv
6.6 MB
FNDDS_2009-10_62Nutrients_ensemble_5folds.csv
10.6 MB
FNDDS_2009-10_99_Nutrients_ensemble_5folds.csv
13.3 MB
FNDDS_2015-16_62Nutrients_ensemble_5folds.csv
14.6 MB
feature_dependence.html
9.8 kB
paper_classifiers_outcomes
FNDDS0910_12Nutrients_5folds_SMOTE.pkl
134 Bytes
FNDDS0910_62Nutrients_5folds_SMOTE.pkl
134 Bytes
FNDDS0910_99Nutrients_5folds_SMOTE.pkl
134 Bytes
OpenFoodFacts11p_Performance.pkl.zip
134 Bytes
WNPPrecisionRecall.pkl
131 Bytes
WNPRF.pkl
133 Bytes
WNPROCcurve.pkl
131 Bytes
model85nutrients_shap.pkl
133 Bytes
plots_tools.py
8.5 kB
whist.m
355 Bytes