public class LocalPhaseTools
extends java.lang.Object
Constructor and Description |
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LocalPhaseTools() |
Modifier and Type | Method and Description |
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static void |
applyThreshold(ij.process.ByteProcessor bp,
double minThreshold,
double maxThreshold) |
static ij.ImageStack |
getClonedByteStack(ij.ImageStack source) |
static double[] |
getCorrelationInformation(int[] idx,
int[] idx_ref) |
static double |
getCorrelationStrength(int[] idx,
int[] idx_ref) |
static ij.ImageStack |
getEmptyByteStack(ij.ImageStack source) |
static ij.ImageStack |
getEmptyByteStack(int width,
int height,
int size) |
static ij.ImageStack |
getEmptyFloatStack(int width,
int height,
int size) |
static ij.process.ImageStatistics |
getLineStatistics(ij.gui.Roi roi,
ij.process.ImageProcessor ip,
int measurements,
ij.measure.Calibration cal) |
static int |
getMaxElementBelow(int[] idx,
int el) |
static double |
getMeanPeriod(int[] idx) |
static int |
getMinElementAbove(int[] idx,
int el) |
static int |
getNearestElement(int[] idx,
int el) |
static int |
getPeriod(int[] idx,
int desired_position) |
static double |
getPhase(int[] idx,
int[] idx_ref) |
double[] |
getZAxisProfileRoi(ij.gui.Roi roi,
ij.ImagePlus imp) |
static int[] |
indices_to_positive_elements(int[] theSection) |
static double |
mean(double[] x) |
static int |
n_positive_elements(int[] theSection) |
public static void applyThreshold(ij.process.ByteProcessor bp, double minThreshold, double maxThreshold)
public double[] getZAxisProfileRoi(ij.gui.Roi roi, ij.ImagePlus imp)
public static ij.process.ImageStatistics getLineStatistics(ij.gui.Roi roi, ij.process.ImageProcessor ip, int measurements, ij.measure.Calibration cal)
public static ij.ImageStack getEmptyByteStack(ij.ImageStack source)
public static ij.ImageStack getEmptyByteStack(int width, int height, int size)
public static ij.ImageStack getEmptyFloatStack(int width, int height, int size)
public static ij.ImageStack getClonedByteStack(ij.ImageStack source)
public static int getMaxElementBelow(int[] idx, int el)
public static int getMinElementAbove(int[] idx, int el)
public static int getPeriod(int[] idx, int desired_position)
public static int getNearestElement(int[] idx, int el)
public static double[] getCorrelationInformation(int[] idx, int[] idx_ref)
public static double getCorrelationStrength(int[] idx, int[] idx_ref)
public static double getPhase(int[] idx, int[] idx_ref)
public static int[] indices_to_positive_elements(int[] theSection)
public static int n_positive_elements(int[] theSection)
public static double getMeanPeriod(int[] idx)
public static double mean(double[] x)