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Published January 20, 2023 | Version 4.1.9.5689
Software Open

BioNovogene MZKit: Data toolkits for processing NMR, MALDI MSI, MALDI single cell, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization

Authors/Creators

  • 1. SMRUCC genomics
  • 2. BioNovoGene

Description

Mzkit is an open source raw data file toolkit for mass spectrometry data analysis, provides by the BioNovoGene corporation. The features of mzkit inlcudes: raw data file content viewer(XIC/TIC/Mass spectrum plot), build molecule network, formula de-novo search and de-novo annotation.

This open source mass spectrometry data toolkit is developed at the BioDeep R&D laboratory and brought to you by BioNovoGene corporation.

Downloads: http://www.biodeep.cn/downloads?lang=en-US

 

๐ŸŽ‰๐ŸŽ‡๐ŸŽ‡2023 ๐ŸŽ‰Happy chinese new year! ๐Ÿงจ๐Ÿงจ๐Ÿงจ๐ŸŽ‰๐ŸŽ‰๐ŸŽ‡๐ŸŽ‡

  • fixed Make bugs fixed for the web query cache system: empty cache could make the empty query result always returned, now it has been fixed!
  • new Add mzkit background services process viewer
  • new Reconstruct of the mzkit workbench desktop application framework for implements the plugin feature, the mzkit app sotre online services is comming soon!
  • enhancement fixed for the possible null reference error and the index out of range error, make the MS-imaging viewer more stable
  • enhancement make improvements of the task progress UI
  • enhancement add copy text and save log output text function to the log text output window
  • new Add custom action for view scatter 3d data on the table data.
  • new View spatial metabolism tissue spot cluster data in 3d scatter plot view
  • new Add new feature for connect to the cloud services for processing ms-imaging data analysis and visualization
  • new Add a new feature for view virtual pathology slide in tiff, dzi or ndpi format!
  • new View NMR raw data spectrum
  • new View 3D MALDI scan data, MS-imaging in 3D
  • new Add single cell metabolism data processing feature into the mzkit R# package!
  • enhancement Add data context menu in the spectrum matrix viewer: [Open in table view] for send the spectrum matrix to the table viewer for the further data analysis or visualization, and the [Save] menu item for export the selected spectrum matrix into an excel file.
  • enhancement Add shortcut button for launch the ms data file conversion tool
  • new Merge multiple ms-imaging sample data file into one larger slide, and you also can custom the sample location layout in a super easy way
  • new Add an excited feature which you can make the spatial mapping between the spatial transcription sample slide and the spatial metabolism sample slide!
  • enhancement make improvements of the ms-imaging render output post image processing function
  • fixed make bugs fixed for the in-correct slide scan width and height when do background clean in manually.
  • enhancement change the [install Mzkit] button from install package internally to calling the external pipeline script for initialize the R# runtime environment.
  • update make improvements of the MS-imaging viewer, update to v2.0 version: do zoom, rotation of the ms-imaging output
  • update Add parameter adjustment for the peak finding algorithm page
  • enhancement Add functional buttons/context menu to the peak finding page: save matrix, imports matrix and copy peak list data.
  • enhancement Add options for check sample row data normalization when do row sample data merge of the MS-imaging row scans.

Full Changelog: https://github.com/xieguigang/mzkit/compare/3.5.593.3968...4.1.9.5689

Notes

If you use this software, please cite it as below.

Files

xieguigang/mzkit-4.1.9.5689.zip

Files (393.6 MB)

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