Published January 17, 2023
| Version 0.0.13
Software
Open
neurostuff/NiMARE: 0.0.13
Creators
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Salo, Taylor1
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Yarkoni, Tal2
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Nichols, Thomas E.3
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Poline, Jean-Baptiste4
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Kent, James D.5
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Gorgolewski, Krzysztof J.6
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Glerean, Enrico7
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Bottenhorn, Katherine L.1
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Bilgel, Murat8
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Wright, Jessey6
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Reeders, Puck1
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Kimbler, Adam1
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Nielson, Dylan N.9
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Yanes, Julio A.10
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Pérez, Alexandre11
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Oudyk, Kendra M.11
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Jarecka, Dorota12
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Enge, Alexander13
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Peraza, Julio A.1
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Eickhoff, Simon B.14
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De La Vega, Alejandro15
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Liu, Zhen-Qi11
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Laird, Angela R.1
- 1. Florida International University
- 2. University of Texas at Austin
- 3. Big Data Institute, University of Oxford
- 4. Neurology and Neurosurgery, McGill University
- 5. Neuroscience Program, University of Iowa
- 6. Department of Psychology, Stanford University
- 7. Department of Neuroscience and Biomedical Engineering, Aalto University
- 8. National Institute on Aging
- 9. National Institute of Mental Health
- 10. Auburn University
- 11. Montreal Neurological Institute, McGill University
- 12. MIT
- 13. Max Planck Institute for Human Cognitive and Brain Sciences
- 14. Heinrich-Heine-Universität Düsseldorf
- 15. Department of Psychology, University of Texas at Austin
Description
What's Changed
This release was motivated because there were updates to underlying packages that broke the installation of NiMARE. In addition, there are multiple breaking changes as well as new features outlined below.
🛠 Breaking Changes- Remove Peaks2Maps from NiMARE by @tsalo in https://github.com/neurostuff/NiMARE/pull/644
- Remove duecredit in favor of BibTeX references by @tsalo in https://github.com/neurostuff/NiMARE/pull/736
- Switch from face+edge connectivity to face-only by @tsalo in https://github.com/neurostuff/NiMARE/pull/733
- Remove conperm and scale CLI workflows by @tsalo in https://github.com/neurostuff/NiMARE/pull/740 ### 🎉 Exciting New Features
- Add
tablesattribute to MetaResult class by @tsalo in https://github.com/neurostuff/NiMARE/pull/734 - Add FocusFilter class for removing coordinates outside of a mask by @tsalo in https://github.com/neurostuff/NiMARE/pull/732
- Add parallelization option to
CorrelationDecoderandCorrelationDistributionDecoderby @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/738 - Append the top 3 words to LDA topic names by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/741
- Enhance LDA annotator by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/742 ### 🐛 Bug Fixes
- Shift centers of mass into clusters in Jackknife/FocusCounter by @tsalo in https://github.com/neurostuff/NiMARE/pull/735
- fix a bug in conversion from z statistics to p values by @yifan0330 in https://github.com/neurostuff/NiMARE/pull/749
- Remove "dataset"
return_typeoption from kernel transformers by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/752 ### Other Changes - Fix import in download_neurosynth example by @PTDZ in https://github.com/neurostuff/NiMARE/pull/743
- Optimize compute_kda_ma by @liuzhenqi77 in https://github.com/neurostuff/NiMARE/pull/745
- Optimize dataset.get by @liuzhenqi77 in https://github.com/neurostuff/NiMARE/pull/746
- Fix MACM analysis example by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/750
- Remove upper bound for matplotlib version by @ghisvail in https://github.com/neurostuff/NiMARE/pull/751
- Fix neurosyth download_abstracts example; inc biopython by @WillForan in https://github.com/neurostuff/NiMARE/pull/753
- Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/754
- [MAINT] Fix various errors due to major version changes in dependencies by @jdkent in https://github.com/neurostuff/NiMARE/pull/757
- @PTDZ made their first contribution in https://github.com/neurostuff/NiMARE/pull/743
- @liuzhenqi77 made their first contribution in https://github.com/neurostuff/NiMARE/pull/745
- @yifan0330 made their first contribution in https://github.com/neurostuff/NiMARE/pull/749
- @ghisvail made their first contribution in https://github.com/neurostuff/NiMARE/pull/751
- @WillForan made their first contribution in https://github.com/neurostuff/NiMARE/pull/753
Full Changelog: https://github.com/neurostuff/NiMARE/compare/0.0.12...0.0.13
Files
neurostuff/NiMARE-0.0.13.zip
Files
(15.9 MB)
| Name | Size | Download all |
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md5:f952372353de8428551d4eb377994639
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Additional details
Related works
- Is supplement to
- https://github.com/neurostuff/NiMARE/tree/0.0.13 (URL)