IWG_PI.zip
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IWG_PI
.DS_Store
6.1 kB
0_0_Verify_GWAS_GBS_Files.Rmd
30.1 kB
0_0_Verify_GWAS_GBS_Files.html
3.3 MB
0_1_Compile_Germplasm.Rmd
3.9 kB
0_1_Compile_Germplasm.html
630.1 kB
1_0_1_IWG_PI_Population_Structure_Deprecated.Rmd
22.5 kB
1_0_1_IWG_PI_Population_Structure_Deprecated.html
5.7 MB
1_0_2_IWG_PI_Population_Structure_Deprecated.Rmd
12.2 kB
1_0_2_IWG_PI_Population_Structure_Deprecated.html
5.6 MB
1_0_IWG_PI_Population_Structure.Rmd
24.6 kB
1_0_IWG_PI_Population_Structure.html
5.9 MB
1_1_IWG_PI_Population_Structure_Evaluation.Rmd
17.1 kB
1_1_IWG_PI_Population_Structure_Evaluation.html
5.8 MB
2_0_IWG_PI_Amova.Rmd
11.3 kB
2_0_IWG_PI_Amova.html
798.1 kB
3_0_IWG_PI_Phenotypic.Rmd
21.9 kB
3_0_IWG_PI_Phenotypic.html
4.5 MB
3_1_IWG_PI_Phenotypic_ANOVA.Rmd
2.7 kB
3_1_IWG_PI_Phenotypic_ANOVA.html
642.5 kB
4_0_GWAS.Rmd
8.8 kB
4_0_GWAS.html
9.4 MB
5_0_XP_GWAS_Pools.Rmd
20.2 kB
5_0_XP_GWAS_Pools.html
745.5 kB
6_0_XP_GWAS_Validation.Rmd
14.1 kB
6_0_XP_GWAS_Validation.html
2.0 MB
7_0_Manuscript_Tables_Figures.Rmd
5.6 kB
7_0_Manuscript_Tables_Figures.html
1.7 MB
File_List.txt
205.7 kB
IWG_PI.Rproj
205 Bytes
README.pdf
127.3 kB
beocat
.DS_Store
6.1 kB
STRUCTURE
.DS_Store
8.2 kB
PI_All
PI_Structure_10_1_q
171.2 kB
PI_Structure_10_3_f
2.7 MB
PI_Structure_10_5_q
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PI_Structure_10_7_f
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PI_Structure_2_10_f
1.5 MB
PI_Structure_4_2_f
1.8 MB
PI_Structure_4_4_q
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PI_Structure_4_8_f
1.8 MB
PI_Structure_5_2_f
2.0 MB
PI_Structure_5_4_q
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PI_Structure_5_6_f
2.0 MB
PI_Structure_5_8_f
2.0 MB
PI_Structure_6_10_q
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PI_Structure_6_6_f
2.1 MB
PI_Structure_6_8_f
2.1 MB
PI_Structure_7_2_f
2.3 MB
PI_Structure_7_4_q
129.9 kB
PI_Structure_7_6_f
2.3 MB
PI_Structure_7_8_f
2.3 MB
PI_All_EQ
PI_All_HQ
PI_All_HQ_EQ
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PI_Structure_HQ_EQ_10_10_q
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PI_Structure_HQ_EQ_10_1_f
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PI_Structure_HQ_EQ_10_1_q
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PI_Structure_HQ_EQ_10_2_f
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PI_Structure_HQ_EQ_10_2_q
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PI_Structure_HQ_EQ_10_3_f
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PI_Structure_HQ_EQ_10_3_q
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PI_Structure_HQ_EQ_10_4_f
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PI_Structure_HQ_EQ_10_4_q
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PI_Structure_HQ_EQ_10_5_f
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PI_Structure_HQ_EQ_10_5_q
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PI_Structure_HQ_EQ_10_6_f
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PI_Structure_HQ_EQ_10_6_q
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PI_Structure_HQ_EQ_10_7_f
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PI_Structure_HQ_EQ_10_7_q
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PI_Structure_HQ_EQ_10_8_f
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PI_Structure_HQ_EQ_10_8_q
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PI_Structure_HQ_EQ_10_9_f
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PI_Structure_HQ_EQ_10_9_q
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PI_Structure_HQ_EQ_1_1_f
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PI_Structure_HQ_EQ_1_2_f
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PI_Structure_HQ_EQ_1_2_q
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PI_Structure_HQ_EQ_1_3_f
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PI_Structure_HQ_EQ_1_3_q
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PI_Structure_HQ_EQ_1_4_f
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PI_Structure_HQ_EQ_1_4_q
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PI_Structure_HQ_EQ_1_5_f
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PI_Structure_HQ_EQ_1_5_q
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PI_Structure_HQ_EQ_1_6_f
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PI_Structure_HQ_EQ_1_6_q
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PI_Structure_HQ_EQ_1_7_f
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PI_Structure_HQ_EQ_1_8_f
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PI_Structure_HQ_EQ_1_8_q
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PI_Structure_HQ_EQ_1_9_f
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PI_Structure_HQ_EQ_1_9_q
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PI_Structure_HQ_EQ_2_10_f
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PI_Structure_HQ_EQ_2_10_q
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PI_Structure_HQ_EQ_2_1_f
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PI_Structure_HQ_EQ_2_1_q
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PI_Structure_HQ_EQ_2_2_f
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PI_Structure_HQ_EQ_2_2_q
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PI_Structure_HQ_EQ_2_3_f
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PI_Structure_HQ_EQ_2_3_q
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PI_Structure_HQ_EQ_2_4_f
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PI_Structure_HQ_EQ_2_4_q
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PI_Structure_HQ_EQ_2_6_q
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PI_Structure_HQ_EQ_2_7_q
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PI_Structure_HQ_EQ_2_9_q
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PI_Structure_HQ_EQ_3_10_q
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PI_Structure_HQ_EQ_3_1_q
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PI_Structure_HQ_EQ_3_2_f
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PI_Structure_HQ_EQ_3_2_q
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PI_Structure_HQ_EQ_3_3_f
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PI_Structure_HQ_EQ_3_3_q
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PI_Structure_HQ_EQ_3_4_f
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PI_Structure_HQ_EQ_3_4_q
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PI_Structure_HQ_EQ_3_5_q
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PI_Structure_HQ_EQ_3_6_f
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PI_Structure_HQ_EQ_3_6_q
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PI_Structure_HQ_EQ_3_7_f
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PI_Structure_HQ_EQ_3_7_q
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PI_Structure_HQ_EQ_3_8_f
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PI_Structure_HQ_EQ_3_8_q
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PI_Structure_HQ_EQ_3_9_f
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PI_Structure_HQ_EQ_3_9_q
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PI_Structure_HQ_EQ_4_10_f
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PI_Structure_HQ_EQ_4_10_q
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PI_Structure_HQ_EQ_4_1_f
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PI_Structure_HQ_EQ_4_1_q
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PI_Structure_HQ_EQ_4_2_f
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PI_Structure_HQ_EQ_4_2_q
88.6 kB
PI_Structure_HQ_EQ_4_3_f
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PI_Structure_HQ_EQ_4_3_q
88.6 kB
PI_Structure_HQ_EQ_4_4_f
276.3 kB
PI_Structure_HQ_EQ_4_4_q
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PI_Structure_HQ_EQ_4_5_f
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PI_Structure_HQ_EQ_4_5_q
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PI_Structure_HQ_EQ_4_6_f
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PI_Structure_HQ_EQ_4_6_q
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PI_Structure_HQ_EQ_4_7_f
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PI_Structure_HQ_EQ_4_7_q
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PI_Structure_HQ_EQ_4_8_f
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PI_Structure_HQ_EQ_4_8_q
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PI_Structure_HQ_EQ_4_9_f
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PI_Structure_HQ_EQ_4_9_q
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PI_Structure_HQ_EQ_5_10_f
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PI_Structure_HQ_EQ_5_10_q
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PI_Structure_HQ_EQ_5_1_q
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PI_Structure_HQ_EQ_5_2_f
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PI_Structure_HQ_EQ_5_2_q
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PI_Structure_HQ_EQ_5_3_f
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PI_Structure_HQ_EQ_5_3_q
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PI_Structure_HQ_EQ_5_4_f
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PI_Structure_HQ_EQ_5_4_q
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PI_Structure_HQ_EQ_5_5_f
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PI_Structure_HQ_EQ_5_5_q
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PI_Structure_HQ_EQ_5_6_f
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PI_Structure_HQ_EQ_5_6_q
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PI_Structure_HQ_EQ_5_7_f
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PI_Structure_HQ_EQ_5_7_q
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PI_Structure_HQ_EQ_5_8_f
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PI_Structure_HQ_EQ_5_8_q
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PI_Structure_HQ_EQ_5_9_f
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PI_Structure_HQ_EQ_5_9_q
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PI_Structure_HQ_EQ_6_10_f
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PI_Structure_HQ_EQ_6_10_q
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PI_Structure_HQ_EQ_6_1_q
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PI_Structure_HQ_EQ_6_2_f
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PI_Structure_HQ_EQ_6_2_q
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PI_Structure_HQ_EQ_6_3_f
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PI_Structure_HQ_EQ_6_3_q
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PI_Structure_HQ_EQ_6_4_f
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PI_Structure_HQ_EQ_6_4_q
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PI_Structure_HQ_EQ_6_5_f
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PI_Structure_HQ_EQ_6_5_q
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PI_Structure_HQ_EQ_6_6_f
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PI_Structure_HQ_EQ_6_6_q
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PI_Structure_HQ_EQ_6_7_f
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PI_Structure_HQ_EQ_6_7_q
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PI_Structure_HQ_EQ_6_8_f
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PI_Structure_HQ_EQ_6_8_q
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PI_Structure_HQ_EQ_6_9_f
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PI_Structure_HQ_EQ_6_9_q
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PI_Structure_HQ_EQ_7_10_q
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PI_Structure_HQ_EQ_7_1_f
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PI_Structure_HQ_EQ_7_1_q
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PI_Structure_HQ_EQ_7_2_f
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PI_Structure_HQ_EQ_7_2_q
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PI_Structure_HQ_EQ_7_3_f
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PI_Structure_HQ_EQ_7_3_q
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PI_Structure_HQ_EQ_7_4_f
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PI_Structure_HQ_EQ_7_4_q
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PI_Structure_HQ_EQ_7_5_f
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PI_Structure_HQ_EQ_7_5_q
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PI_Structure_HQ_EQ_7_6_f
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PI_Structure_HQ_EQ_7_6_q
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PI_Structure_HQ_EQ_7_7_f
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PI_Structure_HQ_EQ_7_7_q
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PI_Structure_HQ_EQ_7_8_f
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PI_Structure_HQ_EQ_7_8_q
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PI_Structure_HQ_EQ_7_9_f
355.0 kB
PI_Structure_HQ_EQ_7_9_q
129.9 kB
PI_Structure_HQ_EQ_8_10_f
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PI_Structure_HQ_EQ_8_10_q
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PI_Structure_HQ_EQ_8_1_f
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PI_Structure_HQ_EQ_8_1_q
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PI_Structure_HQ_EQ_8_2_f
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PI_Structure_HQ_EQ_8_2_q
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PI_Structure_HQ_EQ_8_3_f
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PI_Structure_HQ_EQ_8_3_q
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PI_Structure_HQ_EQ_8_4_f
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PI_Structure_HQ_EQ_8_4_q
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PI_Structure_HQ_EQ_8_5_f
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PI_Structure_HQ_EQ_8_5_q
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PI_Structure_HQ_EQ_8_6_f
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PI_Structure_HQ_EQ_8_6_q
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PI_Structure_HQ_EQ_8_7_f
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PI_Structure_HQ_EQ_8_7_q
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PI_Structure_HQ_EQ_8_8_f
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PI_Structure_HQ_EQ_8_8_q
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PI_Structure_HQ_EQ_8_9_f
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PI_Structure_HQ_EQ_8_9_q
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PI_Structure_HQ_EQ_9_10_f
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PI_Structure_HQ_EQ_9_10_q
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PI_Structure_HQ_EQ_9_1_f
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PI_Structure_HQ_EQ_9_1_q
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PI_Structure_HQ_EQ_9_2_f
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PI_Structure_HQ_EQ_9_2_q
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PI_Structure_HQ_EQ_9_3_f
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PI_Structure_HQ_EQ_9_3_q
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PI_Structure_HQ_EQ_9_4_f
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PI_Structure_HQ_EQ_9_4_q
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PI_Structure_HQ_EQ_9_5_f
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PI_Structure_HQ_EQ_9_5_q
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PI_Structure_HQ_EQ_9_6_q
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PI_Structure_HQ_EQ_9_7_f
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PI_Structure_HQ_EQ_9_7_q
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PI_Structure_HQ_EQ_9_8_q
157.4 kB
PI_Structure_HQ_EQ_9_9_f
407.5 kB
PI_Structure_HQ_EQ_9_9_q
157.4 kB
PI_Pooled
.DS_Store
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PI_Pooled_Structure_10_10_f
10.2 MB
PI_Pooled_Structure_10_10_q
28.8 kB
PI_Pooled_Structure_10_1_f
10.2 MB
PI_Pooled_Structure_10_1_q
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PI_Pooled_Structure_10_2_f
10.2 MB
PI_Pooled_Structure_10_2_q
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PI_Pooled_Structure_10_3_f
10.2 MB
PI_Pooled_Structure_10_3_q
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PI_Pooled_Structure_10_4_f
10.2 MB
PI_Pooled_Structure_10_4_q
28.8 kB
PI_Pooled_Structure_10_5_f
10.2 MB
PI_Pooled_Structure_10_5_q
28.8 kB
PI_Pooled_Structure_10_6_f
10.2 MB
PI_Pooled_Structure_10_6_q
28.8 kB
PI_Pooled_Structure_10_7_f
10.2 MB
PI_Pooled_Structure_10_7_q
28.8 kB
PI_Pooled_Structure_10_8_f
10.2 MB
PI_Pooled_Structure_10_8_q
28.8 kB
PI_Pooled_Structure_10_9_f
10.2 MB
PI_Pooled_Structure_10_9_q
28.8 kB
PI_Pooled_Structure_1_10_f
5.0 MB
PI_Pooled_Structure_1_10_q
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PI_Pooled_Structure_1_1_f
5.0 MB
PI_Pooled_Structure_1_1_q
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PI_Pooled_Structure_1_2_f
5.0 MB
PI_Pooled_Structure_1_2_q
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PI_Pooled_Structure_1_3_f
5.0 MB
PI_Pooled_Structure_1_3_q
7.9 kB
PI_Pooled_Structure_1_4_f
5.0 MB
PI_Pooled_Structure_1_4_q
7.9 kB
PI_Pooled_Structure_1_5_f
5.0 MB
PI_Pooled_Structure_1_5_q
7.9 kB
PI_Pooled_Structure_1_6_f
5.0 MB
PI_Pooled_Structure_1_6_q
7.9 kB
PI_Pooled_Structure_1_7_f
5.0 MB
PI_Pooled_Structure_1_7_q
7.9 kB
PI_Pooled_Structure_1_8_f
5.0 MB
PI_Pooled_Structure_1_8_q
7.9 kB
PI_Pooled_Structure_1_9_f
5.0 MB
PI_Pooled_Structure_1_9_q
7.9 kB
PI_Pooled_Structure_2_10_f
5.6 MB
PI_Pooled_Structure_2_10_q
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PI_Pooled_Structure_2_1_f
5.6 MB
PI_Pooled_Structure_2_1_q
10.3 kB
PI_Pooled_Structure_2_2_f
5.6 MB
PI_Pooled_Structure_2_2_q
10.3 kB
PI_Pooled_Structure_2_3_f
5.6 MB
PI_Pooled_Structure_2_3_q
10.3 kB
PI_Pooled_Structure_2_4_f
5.6 MB
PI_Pooled_Structure_2_4_q
10.3 kB
PI_Pooled_Structure_2_5_f
5.6 MB
PI_Pooled_Structure_2_5_q
10.3 kB
PI_Pooled_Structure_2_6_f
5.6 MB
PI_Pooled_Structure_2_6_q
10.3 kB
PI_Pooled_Structure_2_7_f
5.6 MB
PI_Pooled_Structure_2_7_q
10.3 kB
PI_Pooled_Structure_2_8_f
5.6 MB
PI_Pooled_Structure_2_8_q
10.3 kB
PI_Pooled_Structure_2_9_f
5.6 MB
PI_Pooled_Structure_2_9_q
10.3 kB
PI_Pooled_Structure_3_10_f
6.2 MB
PI_Pooled_Structure_3_10_q
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PI_Pooled_Structure_3_1_f
6.2 MB
PI_Pooled_Structure_3_1_q
12.6 kB
PI_Pooled_Structure_3_2_f
6.2 MB
PI_Pooled_Structure_3_2_q
12.6 kB
PI_Pooled_Structure_3_3_f
6.2 MB
PI_Pooled_Structure_3_3_q
12.6 kB
PI_Pooled_Structure_3_4_f
6.2 MB
PI_Pooled_Structure_3_4_q
12.6 kB
PI_Pooled_Structure_3_5_f
6.2 MB
PI_Pooled_Structure_3_5_q
12.6 kB
PI_Pooled_Structure_3_6_f
6.2 MB
PI_Pooled_Structure_3_6_q
12.6 kB
PI_Pooled_Structure_3_7_f
6.2 MB
PI_Pooled_Structure_3_7_q
12.6 kB
PI_Pooled_Structure_3_8_f
6.2 MB
PI_Pooled_Structure_3_8_q
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PI_Pooled_Structure_3_9_f
6.2 MB
PI_Pooled_Structure_3_9_q
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PI_Pooled_Structure_4_10_f
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PI_Pooled_Structure_4_10_q
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PI_Pooled_Structure_4_1_f
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PI_Pooled_Structure_4_1_q
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PI_Pooled_Structure_4_2_f
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PI_Pooled_Structure_4_2_q
14.9 kB
PI_Pooled_Structure_4_3_f
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PI_Pooled_Structure_4_3_q
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PI_Pooled_Structure_4_4_f
6.7 MB
PI_Pooled_Structure_4_4_q
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PI_Pooled_Structure_4_5_f
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PI_Pooled_Structure_4_5_q
14.9 kB
PI_Pooled_Structure_4_6_f
6.7 MB
PI_Pooled_Structure_4_6_q
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PI_Pooled_Structure_4_7_f
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PI_Pooled_Structure_4_7_q
14.9 kB
PI_Pooled_Structure_4_8_f
6.7 MB
PI_Pooled_Structure_4_8_q
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PI_Pooled_Structure_4_9_f
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PI_Pooled_Structure_4_9_q
14.9 kB
PI_Pooled_Structure_5_10_f
7.3 MB
PI_Pooled_Structure_5_10_q
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PI_Pooled_Structure_5_1_f
7.3 MB
PI_Pooled_Structure_5_1_q
17.2 kB
PI_Pooled_Structure_5_2_f
7.3 MB
PI_Pooled_Structure_5_2_q
17.2 kB
PI_Pooled_Structure_5_3_f
7.3 MB
PI_Pooled_Structure_5_3_q
17.2 kB
PI_Pooled_Structure_5_4_f
7.3 MB
PI_Pooled_Structure_5_4_q
17.2 kB
PI_Pooled_Structure_5_5_f
7.3 MB
PI_Pooled_Structure_5_5_q
17.2 kB
PI_Pooled_Structure_5_6_f
7.3 MB
PI_Pooled_Structure_5_6_q
17.2 kB
PI_Pooled_Structure_5_7_f
7.3 MB
PI_Pooled_Structure_5_7_q
17.2 kB
PI_Pooled_Structure_5_8_f
7.3 MB
PI_Pooled_Structure_5_8_q
17.2 kB
PI_Pooled_Structure_5_9_f
7.3 MB
PI_Pooled_Structure_5_9_q
17.2 kB
PI_Pooled_Structure_6_10_f
7.9 MB
PI_Pooled_Structure_6_10_q
19.5 kB
PI_Pooled_Structure_6_1_f
7.9 MB
PI_Pooled_Structure_6_1_q
19.5 kB
PI_Pooled_Structure_6_2_f
7.9 MB
PI_Pooled_Structure_6_2_q
19.5 kB
PI_Pooled_Structure_6_3_f
7.9 MB
PI_Pooled_Structure_6_3_q
19.5 kB
PI_Pooled_Structure_6_4_f
7.9 MB
PI_Pooled_Structure_6_4_q
19.5 kB
PI_Pooled_Structure_6_5_f
7.9 MB
PI_Pooled_Structure_6_5_q
19.5 kB
PI_Pooled_Structure_6_6_f
7.9 MB
PI_Pooled_Structure_6_6_q
19.5 kB
PI_Pooled_Structure_6_7_f
7.9 MB
PI_Pooled_Structure_6_7_q
19.5 kB
PI_Pooled_Structure_6_8_f
7.9 MB
PI_Pooled_Structure_6_8_q
19.5 kB
PI_Pooled_Structure_6_9_f
7.9 MB
PI_Pooled_Structure_6_9_q
19.5 kB
PI_Pooled_Structure_7_10_f
8.5 MB
PI_Pooled_Structure_7_10_q
21.8 kB
PI_Pooled_Structure_7_1_f
8.5 MB
PI_Pooled_Structure_7_1_q
21.8 kB
PI_Pooled_Structure_7_2_f
8.5 MB
PI_Pooled_Structure_7_2_q
21.8 kB
PI_Pooled_Structure_7_3_f
8.5 MB
PI_Pooled_Structure_7_3_q
21.8 kB
PI_Pooled_Structure_7_4_f
8.5 MB
PI_Pooled_Structure_7_4_q
21.8 kB
PI_Pooled_Structure_7_5_f
8.5 MB
PI_Pooled_Structure_7_5_q
21.8 kB
PI_Pooled_Structure_7_6_f
8.5 MB
PI_Pooled_Structure_7_6_q
21.8 kB
PI_Pooled_Structure_7_7_f
8.5 MB
PI_Pooled_Structure_7_7_q
21.8 kB
PI_Pooled_Structure_7_8_f
8.5 MB
PI_Pooled_Structure_7_8_q
21.8 kB
PI_Pooled_Structure_7_9_f
8.5 MB
PI_Pooled_Structure_7_9_q
21.8 kB
PI_Pooled_Structure_8_10_f
9.1 MB
PI_Pooled_Structure_8_10_q
24.2 kB
PI_Pooled_Structure_8_1_f
9.1 MB
PI_Pooled_Structure_8_1_q
24.2 kB
PI_Pooled_Structure_8_2_f
9.1 MB
PI_Pooled_Structure_8_2_q
24.2 kB
PI_Pooled_Structure_8_3_f
9.1 MB
PI_Pooled_Structure_8_3_q
24.2 kB
PI_Pooled_Structure_8_4_f
9.1 MB
PI_Pooled_Structure_8_4_q
24.2 kB
PI_Pooled_Structure_8_5_f
9.1 MB
PI_Pooled_Structure_8_5_q
24.2 kB
PI_Pooled_Structure_8_6_f
9.1 MB
PI_Pooled_Structure_8_6_q
24.2 kB
PI_Pooled_Structure_8_7_f
9.1 MB
PI_Pooled_Structure_8_7_q
24.2 kB
PI_Pooled_Structure_8_8_f
9.1 MB
PI_Pooled_Structure_8_8_q
24.2 kB
PI_Pooled_Structure_8_9_f
9.1 MB
PI_Pooled_Structure_8_9_q
24.2 kB
PI_Pooled_Structure_9_10_f
9.7 MB
PI_Pooled_Structure_9_10_q
26.5 kB
PI_Pooled_Structure_9_1_f
9.7 MB
PI_Pooled_Structure_9_1_q
26.5 kB
PI_Pooled_Structure_9_2_f
9.7 MB
PI_Pooled_Structure_9_2_q
26.5 kB
PI_Pooled_Structure_9_3_f
9.7 MB
PI_Pooled_Structure_9_3_q
26.5 kB
PI_Pooled_Structure_9_4_f
9.7 MB
PI_Pooled_Structure_9_4_q
26.5 kB
PI_Pooled_Structure_9_5_f
9.7 MB
PI_Pooled_Structure_9_5_q
26.5 kB
PI_Pooled_Structure_9_6_f
9.7 MB
PI_Pooled_Structure_9_6_q
26.5 kB
PI_Pooled_Structure_9_7_f
9.7 MB
PI_Pooled_Structure_9_7_q
26.5 kB
PI_Pooled_Structure_9_8_f
9.7 MB
PI_Pooled_Structure_9_8_q
26.5 kB
PI_Pooled_Structure_9_9_f
9.7 MB
PI_Pooled_Structure_9_9_q
26.5 kB
PI_Pooled_EQ
PI_Pooled_HQ
PI_Pooled_HQ_EQ
PI_Structure_HQ_EQ_10_10_f
246.9 kB
PI_Structure_HQ_EQ_10_10_q
28.8 kB
PI_Structure_HQ_EQ_10_1_f
246.9 kB
PI_Structure_HQ_EQ_10_1_q
28.8 kB
PI_Structure_HQ_EQ_10_2_f
246.9 kB
PI_Structure_HQ_EQ_10_2_q
28.8 kB
PI_Structure_HQ_EQ_10_3_f
246.9 kB
PI_Structure_HQ_EQ_10_3_q
28.8 kB
PI_Structure_HQ_EQ_10_4_f
246.9 kB
PI_Structure_HQ_EQ_10_4_q
28.8 kB
PI_Structure_HQ_EQ_10_5_f
246.9 kB
PI_Structure_HQ_EQ_10_5_q
28.8 kB
PI_Structure_HQ_EQ_10_6_f
246.9 kB
PI_Structure_HQ_EQ_10_6_q
28.8 kB
PI_Structure_HQ_EQ_10_7_f
246.9 kB
PI_Structure_HQ_EQ_10_7_q
28.8 kB
PI_Structure_HQ_EQ_10_8_f
246.9 kB
PI_Structure_HQ_EQ_10_8_q
28.8 kB
PI_Structure_HQ_EQ_10_9_f
246.9 kB
PI_Structure_HQ_EQ_10_9_q
28.8 kB
PI_Structure_HQ_EQ_1_10_f
117.3 kB
PI_Structure_HQ_EQ_1_10_q
7.9 kB
PI_Structure_HQ_EQ_1_1_f
117.3 kB
PI_Structure_HQ_EQ_1_1_q
7.9 kB
PI_Structure_HQ_EQ_1_2_f
117.3 kB
PI_Structure_HQ_EQ_1_2_q
7.9 kB
PI_Structure_HQ_EQ_1_3_f
117.3 kB
PI_Structure_HQ_EQ_1_3_q
7.9 kB
PI_Structure_HQ_EQ_1_4_f
117.3 kB
PI_Structure_HQ_EQ_1_4_q
7.9 kB
PI_Structure_HQ_EQ_1_5_f
117.3 kB
PI_Structure_HQ_EQ_1_5_q
7.9 kB
PI_Structure_HQ_EQ_1_6_f
117.3 kB
PI_Structure_HQ_EQ_1_6_q
7.9 kB
PI_Structure_HQ_EQ_1_7_f
117.3 kB
PI_Structure_HQ_EQ_1_7_q
7.9 kB
PI_Structure_HQ_EQ_1_8_f
117.3 kB
PI_Structure_HQ_EQ_1_8_q
7.9 kB
PI_Structure_HQ_EQ_1_9_f
117.3 kB
PI_Structure_HQ_EQ_1_9_q
7.9 kB
PI_Structure_HQ_EQ_2_10_f
131.7 kB
PI_Structure_HQ_EQ_2_10_q
10.3 kB
PI_Structure_HQ_EQ_2_1_f
131.7 kB
PI_Structure_HQ_EQ_2_1_q
10.3 kB
PI_Structure_HQ_EQ_2_2_f
131.7 kB
PI_Structure_HQ_EQ_2_2_q
10.3 kB
PI_Structure_HQ_EQ_2_3_f
131.7 kB
PI_Structure_HQ_EQ_2_3_q
10.3 kB
PI_Structure_HQ_EQ_2_4_f
131.7 kB
PI_Structure_HQ_EQ_2_4_q
10.3 kB
PI_Structure_HQ_EQ_2_5_f
131.7 kB
PI_Structure_HQ_EQ_2_5_q
10.3 kB
PI_Structure_HQ_EQ_2_6_f
131.7 kB
PI_Structure_HQ_EQ_2_6_q
10.3 kB
PI_Structure_HQ_EQ_2_7_f
131.7 kB
PI_Structure_HQ_EQ_2_7_q
10.3 kB
PI_Structure_HQ_EQ_2_8_f
131.7 kB
PI_Structure_HQ_EQ_2_8_q
10.3 kB
PI_Structure_HQ_EQ_2_9_f
131.7 kB
PI_Structure_HQ_EQ_2_9_q
10.3 kB
PI_Structure_HQ_EQ_3_10_f
146.0 kB
PI_Structure_HQ_EQ_3_10_q
12.6 kB
PI_Structure_HQ_EQ_3_1_f
146.0 kB
PI_Structure_HQ_EQ_3_1_q
12.6 kB
PI_Structure_HQ_EQ_3_2_f
146.0 kB
PI_Structure_HQ_EQ_3_2_q
12.6 kB
PI_Structure_HQ_EQ_3_3_f
146.0 kB
PI_Structure_HQ_EQ_3_3_q
12.6 kB
PI_Structure_HQ_EQ_3_4_f
146.0 kB
PI_Structure_HQ_EQ_3_4_q
12.6 kB
PI_Structure_HQ_EQ_3_5_f
146.0 kB
PI_Structure_HQ_EQ_3_5_q
12.6 kB
PI_Structure_HQ_EQ_3_6_f
146.0 kB
PI_Structure_HQ_EQ_3_6_q
12.6 kB
PI_Structure_HQ_EQ_3_7_f
146.0 kB
PI_Structure_HQ_EQ_3_7_q
12.6 kB
PI_Structure_HQ_EQ_3_8_f
146.0 kB
PI_Structure_HQ_EQ_3_8_q
12.6 kB
PI_Structure_HQ_EQ_3_9_f
146.0 kB
PI_Structure_HQ_EQ_3_9_q
12.6 kB
PI_Structure_HQ_EQ_4_10_f
160.4 kB
PI_Structure_HQ_EQ_4_10_q
14.9 kB
PI_Structure_HQ_EQ_4_1_f
160.4 kB
PI_Structure_HQ_EQ_4_1_q
14.9 kB
PI_Structure_HQ_EQ_4_2_f
160.4 kB
PI_Structure_HQ_EQ_4_2_q
14.9 kB
PI_Structure_HQ_EQ_4_3_f
160.4 kB
PI_Structure_HQ_EQ_4_3_q
14.9 kB
PI_Structure_HQ_EQ_4_4_f
160.4 kB
PI_Structure_HQ_EQ_4_4_q
14.9 kB
PI_Structure_HQ_EQ_4_5_f
160.4 kB
PI_Structure_HQ_EQ_4_5_q
14.9 kB
PI_Structure_HQ_EQ_4_6_f
160.4 kB
PI_Structure_HQ_EQ_4_6_q
14.9 kB
PI_Structure_HQ_EQ_4_7_f
160.4 kB
PI_Structure_HQ_EQ_4_7_q
14.9 kB
PI_Structure_HQ_EQ_4_8_f
160.4 kB
PI_Structure_HQ_EQ_4_8_q
14.9 kB
PI_Structure_HQ_EQ_4_9_f
160.4 kB
PI_Structure_HQ_EQ_4_9_q
14.9 kB
PI_Structure_HQ_EQ_5_10_f
174.7 kB
PI_Structure_HQ_EQ_5_10_q
17.2 kB
PI_Structure_HQ_EQ_5_1_f
174.7 kB
PI_Structure_HQ_EQ_5_1_q
17.2 kB
PI_Structure_HQ_EQ_5_2_f
174.7 kB
PI_Structure_HQ_EQ_5_2_q
17.2 kB
PI_Structure_HQ_EQ_5_3_f
174.7 kB
PI_Structure_HQ_EQ_5_3_q
17.2 kB
PI_Structure_HQ_EQ_5_4_f
174.7 kB
PI_Structure_HQ_EQ_5_4_q
17.2 kB
PI_Structure_HQ_EQ_5_5_f
174.7 kB
PI_Structure_HQ_EQ_5_5_q
17.2 kB
PI_Structure_HQ_EQ_5_6_f
174.7 kB
PI_Structure_HQ_EQ_5_6_q
17.2 kB
PI_Structure_HQ_EQ_5_7_f
174.7 kB
PI_Structure_HQ_EQ_5_7_q
17.2 kB
PI_Structure_HQ_EQ_5_8_f
174.7 kB
PI_Structure_HQ_EQ_5_8_q
17.2 kB
PI_Structure_HQ_EQ_5_9_f
174.7 kB
PI_Structure_HQ_EQ_5_9_q
17.2 kB
PI_Structure_HQ_EQ_6_10_f
189.1 kB
PI_Structure_HQ_EQ_6_10_q
19.5 kB
PI_Structure_HQ_EQ_6_1_f
189.1 kB
PI_Structure_HQ_EQ_6_1_q
19.5 kB
PI_Structure_HQ_EQ_6_2_f
189.1 kB
PI_Structure_HQ_EQ_6_2_q
19.5 kB
PI_Structure_HQ_EQ_6_3_f
189.1 kB
PI_Structure_HQ_EQ_6_3_q
19.5 kB
PI_Structure_HQ_EQ_6_4_f
189.1 kB
PI_Structure_HQ_EQ_6_4_q
19.5 kB
PI_Structure_HQ_EQ_6_5_f
189.1 kB
PI_Structure_HQ_EQ_6_5_q
19.5 kB
PI_Structure_HQ_EQ_6_6_f
189.1 kB
PI_Structure_HQ_EQ_6_6_q
19.5 kB
PI_Structure_HQ_EQ_6_7_f
189.1 kB
PI_Structure_HQ_EQ_6_7_q
19.5 kB
PI_Structure_HQ_EQ_6_8_f
189.1 kB
PI_Structure_HQ_EQ_6_8_q
19.5 kB
PI_Structure_HQ_EQ_6_9_f
189.1 kB
PI_Structure_HQ_EQ_6_9_q
19.5 kB
PI_Structure_HQ_EQ_7_10_f
203.5 kB
PI_Structure_HQ_EQ_7_10_q
21.8 kB
PI_Structure_HQ_EQ_7_1_f
203.5 kB
PI_Structure_HQ_EQ_7_1_q
21.8 kB
PI_Structure_HQ_EQ_7_2_f
203.5 kB
PI_Structure_HQ_EQ_7_2_q
21.8 kB
PI_Structure_HQ_EQ_7_3_f
203.5 kB
PI_Structure_HQ_EQ_7_3_q
21.8 kB
PI_Structure_HQ_EQ_7_4_f
203.5 kB
PI_Structure_HQ_EQ_7_4_q
21.8 kB
PI_Structure_HQ_EQ_7_5_f
203.5 kB
PI_Structure_HQ_EQ_7_5_q
21.8 kB
PI_Structure_HQ_EQ_7_6_f
203.5 kB
PI_Structure_HQ_EQ_7_6_q
21.8 kB
PI_Structure_HQ_EQ_7_7_f
203.5 kB
PI_Structure_HQ_EQ_7_7_q
21.8 kB
PI_Structure_HQ_EQ_7_8_f
203.5 kB
PI_Structure_HQ_EQ_7_8_q
21.8 kB
PI_Structure_HQ_EQ_7_9_f
203.5 kB
PI_Structure_HQ_EQ_7_9_q
21.8 kB
PI_Structure_HQ_EQ_8_10_f
218.0 kB
PI_Structure_HQ_EQ_8_10_q
24.2 kB
PI_Structure_HQ_EQ_8_1_f
218.0 kB
PI_Structure_HQ_EQ_8_1_q
24.2 kB
PI_Structure_HQ_EQ_8_2_f
218.0 kB
PI_Structure_HQ_EQ_8_2_q
24.2 kB
PI_Structure_HQ_EQ_8_3_f
218.0 kB
PI_Structure_HQ_EQ_8_3_q
24.2 kB
PI_Structure_HQ_EQ_8_4_f
218.0 kB
PI_Structure_HQ_EQ_8_4_q
24.2 kB
PI_Structure_HQ_EQ_8_5_f
218.0 kB
PI_Structure_HQ_EQ_8_5_q
24.2 kB
PI_Structure_HQ_EQ_8_6_f
218.0 kB
PI_Structure_HQ_EQ_8_6_q
24.2 kB
PI_Structure_HQ_EQ_8_7_f
218.0 kB
PI_Structure_HQ_EQ_8_7_q
24.2 kB
PI_Structure_HQ_EQ_8_8_f
218.0 kB
PI_Structure_HQ_EQ_8_8_q
24.2 kB
PI_Structure_HQ_EQ_8_9_f
218.0 kB
PI_Structure_HQ_EQ_8_9_q
24.2 kB
PI_Structure_HQ_EQ_9_10_f
232.4 kB
PI_Structure_HQ_EQ_9_10_q
26.5 kB
PI_Structure_HQ_EQ_9_1_f
232.4 kB
PI_Structure_HQ_EQ_9_1_q
26.5 kB
PI_Structure_HQ_EQ_9_2_f
232.4 kB
PI_Structure_HQ_EQ_9_2_q
26.5 kB
PI_Structure_HQ_EQ_9_3_f
232.4 kB
PI_Structure_HQ_EQ_9_3_q
26.5 kB
PI_Structure_HQ_EQ_9_4_f
232.4 kB
PI_Structure_HQ_EQ_9_4_q
26.5 kB
PI_Structure_HQ_EQ_9_5_f
232.4 kB
PI_Structure_HQ_EQ_9_5_q
26.5 kB
PI_Structure_HQ_EQ_9_6_f
232.4 kB
PI_Structure_HQ_EQ_9_6_q
26.5 kB
PI_Structure_HQ_EQ_9_7_f
232.4 kB
PI_Structure_HQ_EQ_9_7_q
26.5 kB
PI_Structure_HQ_EQ_9_8_f
232.4 kB
PI_Structure_HQ_EQ_9_8_q
26.5 kB
PI_Structure_HQ_EQ_9_9_f
232.4 kB
PI_Structure_HQ_EQ_9_9_q
26.5 kB
gbs
.DS_Store
6.1 kB
IWG_PI_Lines_Depth_Call_Filtered.gdepth.gz
14.4 MB
IWG_PI_Lines_Diff_Filtered.hmp.txt.gz
15.8 MB
IWG_PI_Pool_Depth_Call_Filtered.gdepth.gz
24.9 MB
IWG_PI_Pool_Diff_Filtered.hmp.txt.gz
23.7 MB
XP_GWAS
.DS_Store
6.1 kB
CP_1_Depth_Call_Filtered.vcf.gz
3.9 MB
CP_2008_1_Depth_Call_Filtered.vcf.gz
3.8 MB
CP_2008_2_Depth_Call_Filtered.vcf.gz
3.3 MB
CP_2009_1_Depth_Call_Filtered.vcf.gz
3.9 MB
CP_2009_2_Depth_Call_Filtered.vcf.gz
3.3 MB
CP_2_Depth_Call_Filtered.vcf.gz
3.3 MB
DMY_1_Depth_Call_Filtered.vcf.gz
3.9 MB
DMY_2008_1_Depth_Call_Filtered.vcf.gz
3.9 MB
DMY_2008_2_Depth_Call_Filtered.vcf.gz
3.3 MB
DMY_2009_1_Depth_Call_Filtered.vcf.gz
3.9 MB
DMY_2009_2_Depth_Call_Filtered.vcf.gz
3.4 MB
DMY_2_Depth_Call_Filtered.vcf.gz
3.4 MB
IVTD_1_Depth_Call_Filtered.vcf.gz
3.9 MB
IVTD_2008_1_Depth_Call_Filtered.vcf.gz
3.8 MB
IVTD_2008_2_Depth_Call_Filtered.vcf.gz
3.2 MB
IVTD_2009_1_Depth_Call_Filtered.vcf.gz
3.9 MB
IVTD_2009_2_Depth_Call_Filtered.vcf.gz
3.4 MB
IVTD_2_Depth_Call_Filtered.vcf.gz
3.5 MB
NDF_1_Depth_Call_Filtered.vcf.gz
3.8 MB
NDF_2008_1_Depth_Call_Filtered.vcf.gz
3.8 MB
NDF_2008_2_Depth_Call_Filtered.vcf.gz
3.3 MB
NDF_2009_1_Depth_Call_Filtered.vcf.gz
3.8 MB
NDF_2009_2_Depth_Call_Filtered.vcf.gz
3.2 MB
NDF_2_Depth_Call_Filtered.vcf.gz
3.3 MB
NKD_1_Depth_Call_Filtered.vcf.gz
4.1 MB
NKD_2007_1_Depth_Call_Filtered.vcf.gz
4.0 MB
NKD_2007_2_Depth_Call_Filtered.vcf.gz
3.5 MB
NKD_2008_1_Depth_Call_Filtered.vcf.gz
4.0 MB
NKD_2008_2_Depth_Call_Filtered.vcf.gz
3.5 MB
NKD_2009_1_Depth_Call_Filtered.vcf.gz
4.1 MB
NKD_2009_2_Depth_Call_Filtered.vcf.gz
3.6 MB
NKD_2_Depth_Call_Filtered.vcf.gz
3.5 MB
PTHT_1_Depth_Call_Filtered.vcf.gz
4.2 MB
PTHT_2007_1_Depth_Call_Filtered.vcf.gz
4.3 MB
PTHT_2007_2_Depth_Call_Filtered.vcf.gz
3.6 MB
PTHT_2008_1_Depth_Call_Filtered.vcf.gz
4.2 MB
PTHT_2008_2_Depth_Call_Filtered.vcf.gz
3.6 MB
PTHT_2009_1_Depth_Call_Filtered.vcf.gz
4.2 MB
PTHT_2009_2_Depth_Call_Filtered.vcf.gz
3.6 MB
PTHT_2_Depth_Call_Filtered.vcf.gz
3.6 MB
SDMG_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SDMG_2007_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SDMG_2007_2_Depth_Call_Filtered.vcf.gz
3.4 MB
SDMG_2008_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SDMG_2008_2_Depth_Call_Filtered.vcf.gz
3.5 MB
SDMG_2009_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SDMG_2009_2_Depth_Call_Filtered.vcf.gz
3.5 MB
SDMG_2_Depth_Call_Filtered.vcf.gz
3.3 MB
SPLYLD_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SPLYLD_2007_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SPLYLD_2007_2_Depth_Call_Filtered.vcf.gz
3.3 MB
SPLYLD_2008_1_Depth_Call_Filtered.vcf.gz
4.1 MB
SPLYLD_2008_2_Depth_Call_Filtered.vcf.gz
3.6 MB
SPLYLD_2009_1_Depth_Call_Filtered.vcf.gz
4.2 MB
SPLYLD_2009_2_Depth_Call_Filtered.vcf.gz
3.5 MB
SPLYLD_2_Depth_Call_Filtered.vcf.gz
3.5 MB
ZDK_2008_2_Depth_Call_Filtered.vcf.gz
3.9 MB
XP_GWAS_Val
.DS_Store
6.1 kB
Validation_BRCH_Depth_Call_Filtered.vcf.gz
2.1 MB
Validation_CIRC_Depth_Call_Filtered.vcf.gz
2.3 MB
Validation_SHAT_Depth_Call_Filtered.vcf.gz
2.3 MB
XP_GWAS_Val_PI
.DS_Store
6.1 kB
Validation_BRCH_Depth_Call_Filtered.vcf.gz
3.1 MB
Validation_CIRC_Depth_Call_Filtered.vcf.gz
3.3 MB
Validation_SHAT_Depth_Call_Filtered.vcf.gz
3.4 MB
imputation
.DS_Store
6.1 kB
Imputed
PI_All_Lines_Chrom_10_imputed.hmp.txt.gz
243.5 kB
PI_All_Lines_Chrom_11_imputed.hmp.txt.gz
189.2 kB
PI_All_Lines_Chrom_12_imputed.hmp.txt.gz
289.4 kB
PI_All_Lines_Chrom_13_imputed.hmp.txt.gz
194.2 kB
PI_All_Lines_Chrom_14_imputed.hmp.txt.gz
240.9 kB
PI_All_Lines_Chrom_15_imputed.hmp.txt.gz
5.9 kB
PI_All_Lines_Chrom_16_imputed.hmp.txt.gz
152.5 kB
PI_All_Lines_Chrom_17_imputed.hmp.txt.gz
216.7 kB
PI_All_Lines_Chrom_18_imputed.hmp.txt.gz
202.4 kB
PI_All_Lines_Chrom_19_imputed.hmp.txt.gz
142.9 kB
PI_All_Lines_Chrom_1_imputed.hmp.txt.gz
176.1 kB
PI_All_Lines_Chrom_20_imputed.hmp.txt.gz
240.4 kB
PI_All_Lines_Chrom_21_imputed.hmp.txt.gz
133.6 kB
PI_All_Lines_Chrom_22_imputed.hmp.txt.gz
228.3 kB
PI_All_Lines_Chrom_2_imputed.hmp.txt.gz
224.0 kB
PI_All_Lines_Chrom_3_imputed.hmp.txt.gz
221.5 kB
PI_All_Lines_Chrom_4_imputed.hmp.txt.gz
148.0 kB
PI_All_Lines_Chrom_5_imputed.hmp.txt.gz
194.6 kB
PI_All_Lines_Chrom_6_imputed.hmp.txt.gz
186.1 kB
PI_All_Lines_Chrom_7_imputed.hmp.txt.gz
232.6 kB
PI_All_Lines_Chrom_8_imputed.hmp.txt.gz
184.1 kB
PI_All_Lines_Chrom_9_imputed.hmp.txt.gz
258.6 kB
PI_Pooled_Chrom_10_imputed.hmp.txt.gz
423.1 kB
PI_Pooled_Chrom_11_imputed.hmp.txt.gz
273.2 kB
PI_Pooled_Chrom_12_imputed.hmp.txt.gz
517.5 kB
PI_Pooled_Chrom_13_imputed.hmp.txt.gz
327.2 kB
PI_Pooled_Chrom_14_imputed.hmp.txt.gz
422.5 kB
PI_Pooled_Chrom_15_imputed.hmp.txt.gz
1.1 kB
PI_Pooled_Chrom_16_imputed.hmp.txt.gz
2.3 kB
PI_Pooled_Chrom_17_imputed.hmp.txt.gz
300.6 kB
PI_Pooled_Chrom_18_imputed.hmp.txt.gz
406.0 kB
PI_Pooled_Chrom_19_imputed.hmp.txt.gz
364.0 kB
PI_Pooled_Chrom_1_imputed.hmp.txt.gz
351.3 kB
PI_Pooled_Chrom_20_imputed.hmp.txt.gz
258.9 kB
PI_Pooled_Chrom_21_imputed.hmp.txt.gz
380.4 kB
PI_Pooled_Chrom_22_imputed.hmp.txt.gz
272.5 kB
PI_Pooled_Chrom_23_imputed.hmp.txt.gz
458.7 kB
PI_Pooled_Chrom_2_imputed.hmp.txt.gz
435.0 kB
PI_Pooled_Chrom_3_imputed.hmp.txt.gz
425.7 kB
PI_Pooled_Chrom_4_imputed.hmp.txt.gz
258.4 kB
PI_Pooled_Chrom_5_imputed.hmp.txt.gz
393.4 kB
PI_Pooled_Chrom_6_imputed.hmp.txt.gz
355.3 kB
PI_Pooled_Chrom_7_imputed.hmp.txt.gz
452.6 kB
PI_Pooled_Chrom_8_imputed.hmp.txt.gz
321.8 kB
PI_Pooled_Chrom_9_imputed.hmp.txt.gz
423.5 kB
To_Impute
.DS_Store
6.1 kB
data
.DS_Store
8.2 kB
Figures
.DS_Store
6.1 kB
GWAS
K_2_5_Distruct_Plot.pdf
39.3 kB
Multraits-Manhattan.CP_2008_1_CP.CP_1_CP.CP_2009_1_CP.CP_2008_2_CP.CP_2009_2_CP.CP_2_CP.jpg
391.7 kB
Multraits-Manhattan.XP-GWAS_BRCH.GWAS_BRCH.pdf
5.1 MB
Multraits-Manhattan.XP-GWAS_CIRC.GWAS_CIRC.pdf
5.3 MB
Multraits-Manhattan.XP-GWAS_SHAT.GWAS_SHAT.pdf
5.6 MB
PI_All_Lines_DB_Dendrogram.pdf
66.1 kB
PI_DB_Pooled_Dendrogram.pdf
15.5 kB
Unrooted_Neighbor_Joining_Tree.pdf
14.1 kB
XP_GWAS
XP_GWAS_Val_PI
Final_File
.DS_Store
6.1 kB
Cluster_Means_Separation.csv
2.1 kB
PI_Pooled_for_GWAS.txt.gz
7.0 MB
Intermediate_File
.DS_Store
8.2 kB
AMOVA
GWAS
Germplasm_Compiled
IWG_Germplasm_Compiled.csv
31.3 kB
IWG_Germplasm_Compiled.xlsx
35.9 kB
IWG_PI_Key_Filtered.txt
501.0 kB
IWG_PI_Pooled_Samples.txt
496.0 kB
MTA
PI_All_Lines_Hap.hmp.txt.gz
7.3 MB
PI_All_Lines_Imputed.hmp.txt.gz
4.2 MB
PI_Pooled_Hap.hmp.txt.gz
11.5 MB
PI_Pooled_Imputed.hmp.txt.gz
7.8 MB
PI_RCBD_Trait_Year_BLUPs.csv
858.4 kB
PI_Trait_BLUPs.csv
325.3 kB
STRUCTURE
XP_GWAS
XP_GWAS_Val_PI
Manuscript_Figures
.DS_Store
6.1 kB
Figure_1.png
635.2 kB
Figure_2.png
1.3 MB
Figure_3.png
90.4 kB
Figure_4.png
1.6 MB
Figure_5.png
310.4 kB
Supplementary_Figure_1.png
1.4 MB
Supplementary_Figure_2.png
1.3 MB
Supplementary_Figure_3.png
113.6 kB
Supplementary_Figure_4.png
359.0 kB
Supplementary_Figure_5.png
2.7 MB
Original_Data
.DS_Store
6.1 kB
From_Crain_2022_GWAS_Results.csv
11.5 MB
From_Crain_2022_Key_File.txt
2.8 MB
From_Crain_2022_Validation_Set.csv
1.2 MB
IWG_Offtypes_IDs.txt
1.4 kB
IWG_PI_Key.txt
540.0 kB
IWG_PI_Phenotype.csv
1.3 MB
IWG_PI_Plants.csv
137.4 kB
Original_Map_Passport_Data.txt
5.8 kB
RObjects
.DS_Store
6.1 kB
AMOVA_p_values.RDS
1.4 kB
Average_XP_GWAS_depth.RDS
1.5 kB
High_Confidence_High_Call_Markers.RDS
28.6 kB
PI_All_Lines_DB_Dendorgram.RDS
36.8 kB
PI_Pooled_DB_Dendorgram.RDS
6.1 kB
PI_RCBD_Trait_Year_Heritability.RDS
332 Bytes
PI_RCBD_Trait_Year_Models.RDS
2.3 MB
PI_Trait_Combined_Heritability.RDS
230 Bytes
PI_Trait_Combined_Models.RDS
3.9 MB
Principal_Componenet_Analysis_Pooled_Markers.RDS
249.9 MB
Validation_PI_XP_GWAS_FDR.RDS
233 Bytes
XP_GWAS_FDR_Signifciant_Lines.RDS
1.2 kB
XP_GWAS_Pool_Phenotypic_Statistics.RDS
2.6 kB
Tables
.DS_Store
6.1 kB
Supplementary_Table_1.csv
143.3 kB
Supplementary_Table_2.csv
22.5 kB
Table1.csv
424 Bytes
Table1.xlsx
10.6 kB
Table2.csv
1.4 kB
Table2.xlsx
10.4 kB
Table3.csv
959 Bytes
Table3.xlsx
11.0 kB
Table4.csv
5.1 kB
Table4.xlsx
9.9 kB
scripts
.DS_Store
6.1 kB
Function_R.r
21.4 kB
IWG_Database_Queries.R
3.2 kB
IWG_PI_Genotyping.sh
6.7 kB
IWG_PI_Genotyping_Pool.sh
3.7 kB
PI_All_Lines_Beagle_Imputation.sh
1.8 kB
PI_Beagle_Pooled_Imputation.sh
1.8 kB
STRUCTURE
.DS_Store
6.1 kB
PI_All_Lines_STRUCTURE.sh
1.2 kB
PI_All_Lines_STRUCTURE_EQ.sh
1.2 kB
PI_All_Lines_STRUCTURE_HQ.sh
1.2 kB
PI_All_Lines_STRUCTURE_HQ_EQ.sh
1.2 kB
PI_Pooled_Lines_STRUCTURE_EQ.sh
1.2 kB
PI_Pooled_Lines_STRUCTURE_HQ_EQ.sh
1.3 kB
PI_Pooled_STRUCTURE.sh
1.3 kB
PI_Pooled_STRUCTURE_HQ.sh
1.3 kB
Structure_Converter_Parameters.spid
1.6 kB
extraparams
6.3 kB
mainparams.txt
2.7 kB
mainparams_EQ.txt
2.7 kB
mainparams_HQ.txt
2.7 kB
mainparams_HQ_EQ.txt
2.7 kB
mainparams_pool.txt
2.7 kB
mainparams_pool_EQ.txt
2.7 kB
mainparams_pool_HQ.txt
2.7 kB
mainparams_pool_HQ_EQ.txt
2.7 kB
XP_GWAS
.DS_Store
6.1 kB
README.md
2.6 kB
xpgwas.R
5.3 kB
XP_GWAS_Genotyping.sh
3.8 kB
gbs_scripts
.DS_Store
6.1 kB
GBSv2_table_join_to_get_tagid.sql
253 Bytes
Genotype_by_Depth4.pl
1.2 kB
snp_to_tagid.py
1.4 kB
__MACOSX
._IWG_PI
537 Bytes
IWG_PI
._.DS_Store
120 Bytes
._0_0_Verify_GWAS_GBS_Files.Rmd
370 Bytes
._0_0_Verify_GWAS_GBS_Files.html
176 Bytes
._0_1_Compile_Germplasm.html
176 Bytes
._1_0_1_IWG_PI_Population_Structure_Deprecated.html
176 Bytes
._1_0_IWG_PI_Population_Structure.html
176 Bytes
._3_1_IWG_PI_Phenotypic_ANOVA.html
176 Bytes
._4_0_GWAS.Rmd
176 Bytes
._4_0_GWAS.html
176 Bytes
._5_0_XP_GWAS_Pools.Rmd
276 Bytes
._6_0_XP_GWAS_Validation.Rmd
176 Bytes
._7_0_Manuscript_Tables_Figures.Rmd
176 Bytes
._7_0_Manuscript_Tables_Figures.html
176 Bytes
._IWG_PI.Rproj
348 Bytes
._README.pdf
433 Bytes
beocat
._.DS_Store
120 Bytes
STRUCTURE
._.DS_Store
120 Bytes
gbs
._.DS_Store
120 Bytes
XP_GWAS
._.DS_Store
120 Bytes
XP_GWAS_Val
._.DS_Store
120 Bytes
XP_GWAS_Val_PI
._.DS_Store
120 Bytes
imputation
._.DS_Store
120 Bytes
To_Impute
._.DS_Store
120 Bytes
data
._.DS_Store
120 Bytes
Figures
._.DS_Store
120 Bytes
._Multraits-Manhattan.CP_2008_1_CP.CP_1_CP.CP_2009_1_CP.CP_2008_2_CP.CP_2009_2_CP.CP_2_CP.jpg
233 Bytes
._Multraits-Manhattan.XP-GWAS_BRCH.GWAS_BRCH.pdf
176 Bytes
._Multraits-Manhattan.XP-GWAS_CIRC.GWAS_CIRC.pdf
176 Bytes
._Multraits-Manhattan.XP-GWAS_SHAT.GWAS_SHAT.pdf
176 Bytes
Final_File
._.DS_Store
120 Bytes
._PI_Pooled_for_GWAS.txt.gz
276 Bytes
Intermediate_File
._.DS_Store
120 Bytes
._IWG_Germplasm_Compiled.csv
244 Bytes
._IWG_Germplasm_Compiled.xlsx
344 Bytes
._IWG_PI_Pooled_Samples.txt
244 Bytes
Manuscript_Figures
._.DS_Store
120 Bytes
._Figure_5.png
177 Bytes
._Supplementary_Figure_1.png
233 Bytes
._Supplementary_Figure_2.png
233 Bytes
._Supplementary_Figure_5.png
580 Bytes
Original_Data
._.DS_Store
120 Bytes
._From_Crain_2022_GWAS_Results.csv
314 Bytes
._From_Crain_2022_Key_File.txt
214 Bytes
._From_Crain_2022_Validation_Set.csv
270 Bytes
._IWG_Offtypes_IDs.txt
176 Bytes
._IWG_PI_Plants.csv
244 Bytes
RObjects
._.DS_Store
120 Bytes
Tables
._.DS_Store
120 Bytes
._Supplementary_Table_1.csv
288 Bytes
._Table1.csv
244 Bytes
._Table1.xlsx
344 Bytes
._Table2.csv
244 Bytes
._Table2.xlsx
344 Bytes
._Table3.csv
244 Bytes
._Table3.xlsx
344 Bytes
._Table4.csv
244 Bytes
._Table4.xlsx
344 Bytes
scripts
._.DS_Store
120 Bytes
._Function_R.r
511 Bytes
._IWG_Database_Queries.R
442 Bytes
._IWG_PI_Genotyping.sh
227 Bytes
._IWG_PI_Genotyping_Pool.sh
227 Bytes
._PI_All_Lines_Beagle_Imputation.sh
227 Bytes
._PI_Beagle_Pooled_Imputation.sh
227 Bytes
._XP_GWAS_Genotyping.sh
227 Bytes
STRUCTURE
._.DS_Store
120 Bytes
._PI_All_Lines_STRUCTURE.sh
227 Bytes
._PI_All_Lines_STRUCTURE_EQ.sh
327 Bytes
._PI_All_Lines_STRUCTURE_HQ.sh
327 Bytes
._PI_All_Lines_STRUCTURE_HQ_EQ.sh
327 Bytes
._PI_Pooled_Lines_STRUCTURE_EQ.sh
327 Bytes
._PI_Pooled_Lines_STRUCTURE_HQ_EQ.sh
327 Bytes
._PI_Pooled_STRUCTURE.sh
227 Bytes
._PI_Pooled_STRUCTURE_HQ.sh
327 Bytes
._extraparams
478 Bytes
._mainparams.txt
511 Bytes
._mainparams_EQ.txt
327 Bytes
._mainparams_HQ.txt
327 Bytes
._mainparams_HQ_EQ.txt
327 Bytes
._mainparams_pool.txt
227 Bytes
._mainparams_pool_EQ.txt
327 Bytes
._mainparams_pool_HQ.txt
327 Bytes
._mainparams_pool_HQ_EQ.txt
327 Bytes
XP_GWAS
._.DS_Store
120 Bytes
._README.md
383 Bytes
._xpgwas.R
176 Bytes
gbs_scripts
._Genotype_by_Depth4.pl
245.6 kB