Preview

crisprVerse-crisprBase-00050a3
- .Rbuildignore
  
  27 Bytes
- .gitignore
  
  610 Bytes
- DESCRIPTION
  
  1.4 kB
- LICENSE
  
  1.1 kB
- NAMESPACE
  
  2.9 kB
- R
  - AllGenerics.R
    
    4.8 kB
  - BaseEditor-class.R
    
    10.7 kB
  - CrisprNickase-class.R
    
    12.0 kB
  - CrisprNuclease-class.R
    
    11.5 kB
  - Nickase-class.R
    
    9.8 kB
  - Nuclease-class.R
    
    10.9 kB
  - annotateMismatches.R
    
    3.0 kB
  - arithmetics.R
    
    16.7 kB
  - converters.R
    
    1.2 kB
  - data.R
    
    3.1 kB
  - rebase.R
    
    7.4 kB
  - sysdata.rda
    
    3.3 kB
  - utils.R
    
    4.7 kB
- README.Rmd
  
  19.2 kB
- README.md
  
  29.3 kB
- README_files
  - figure-gfm
    - unnamed-chunk-23-1.png
      
      38.9 kB
- data
  - AsCas12a.rda
    
    28.2 kB
  - BE4max.rda
    
    28.9 kB
  - CasRx.rda
    
    28.2 kB
  - SaCas9.rda
    
    28.2 kB
  - SpCas9.rda
    
    28.3 kB
  - SpGCas9.rda
    
    28.2 kB
  - enAsCas12a.rda
    
    28.9 kB
  - restrictionEnzymes.rda
    
    214.9 kB
- inst
  - CITATION
    
    495 Bytes
  - NEWS.Rd
    
    187 Bytes
  - be
    - b4max.csv
      
      791 Bytes
    - readme.txt
      
      150 Bytes
  - createSysdata.R
    
    224 Bytes
  - enzymes
    - allenz.txt
      
      982.4 kB
    - download.txt
      
      651 Bytes
    - notation.txt
      
      4.9 kB
    - process.R
      
      1.3 kB
  - generateObjects.R
    
    3.4 kB
  - pams
    - cas12a
      - 41587_2018_11_MOESM4_ESM.xlsx
        
        62.7 kB
      - addDoench.R
        
        831 Bytes
      - cas12a.pams.rda
        
        2.7 kB
      - doench
        
        encas12a.scores.doench.rda
        
        819 Bytes
        
        files
        
        myl1_myc1_11.fasta
        
        5.9 kB
        
        myl1_myc1_12.fasta
        
        6.0 kB
        
        myl1_myc1_21.fasta
        
        6.0 kB
        
        myl1_myc1_22.fasta
        
        6.1 kB
        
        results11.txt
        
        20.0 kB
        
        results12.txt
        
        31.3 kB
        
        results21.txt
        
        60.9 kB
        
        results22.txt
        
        72.8 kB
        
        process.R
        
        2.1 kB
      - download.txt
        
        71 Bytes
      - processPamsCas12a.R
        
        633 Bytes
    - cas9
      - cas9.pams.rda
        
        298 Bytes
      - generatePamsCas9.R
        
        619 Bytes
  - paths.R
    
    1.4 kB
  - slides
    - classes.pptx
      
      49.5 kB
- man
  - AsCas12a.Rd
    
    506 Bytes
  - BE4max.Rd
    
    597 Bytes
  - BaseEditor-class.Rd
    
    4.0 kB
  - CasRx.Rd
    
    524 Bytes
  - CrisprNickase-class.Rd
    
    6.7 kB
  - CrisprNuclease-class.Rd
    
    6.8 kB
  - Nickase-class.Rd
    
    4.9 kB
  - Nuclease-class.Rd
    
    5.6 kB
  - SaCas9.Rd
    
    498 Bytes
  - SpCas9.Rd
    
    496 Bytes
  - SpGCas9.Rd
    
    498 Bytes
  - annotateMismatches.Rd
    
    1.4 kB
  - enAsCas12a.Rd
    
    583 Bytes
  - extractPamFromTarget.Rd
    
    1.1 kB
  - extractProtospacerFromTarget.Rd
    
    1.2 kB
  - getAvailableCrisprNucleases.Rd
    
    524 Bytes
  - getCutSiteFromPamSite.Rd
    
    779 Bytes
  - getCutSiteRanges.Rd
    
    1.4 kB
  - getEditingSiteFromPamSite.Rd
    
    993 Bytes
  - getPamRanges.Rd
    
    1.3 kB
  - getProtospacerRanges.Rd
    
    1.5 kB
  - getTargetRanges.Rd
    
    1.5 kB
  - plotEditingWeights.Rd
    
    912 Bytes
  - reexports.Rd
    
    490 Bytes
  - restrictionEnzymes.Rd
    
    549 Bytes
- tests
  - testthat
    - test-arithmetics.R
      
      5.0 kB
    - test-crisprnuclease-class.R
      
      1.4 kB
    - test-nuclease-class.R
      
      4.3 kB
  - testthat.R
    
    64 Bytes
- vignettes
  - crisprBase.Rmd
    
    19.3 kB
  - figures
    - cut_sites.pdf
      
      33.6 kB
    - cut_sites.pptx
      
      55.1 kB
    - cut_sites.svg
      
      43.7 kB
    - deprecated
      - nucleasesv1.pptx
        
        44.1 kB
    - drafts
      - nucleases_be.pptx
        
        45.3 kB
      - protospacer.pptx
        
        49.0 kB
    - enzymes.pdf
      
      35.3 kB
    - enzymes.pptx
      
      52.7 kB
    - enzymes.svg
      
      37.8 kB
    - nickases.pdf
      
      61.8 kB
    - nickases.pptx
      
      49.1 kB
    - nickases.svg
      
      51.5 kB
    - nucleases.pdf
      
      72.2 kB
    - nucleases.pptx
      
      54.5 kB
    - nucleases.svg
      
      69.8 kB
    - nucleasesBaseEditor.pdf
      
      62.0 kB
    - nucleasesBaseEditor.pptx
      
      47.8 kB
    - nucleasesBaseEditor.svg
      
      53.8 kB
    - resave.sh
      
      304 Bytes
  - references.bib
    
    8.7 kB

crisprVerse/crisprBase-v1.zip