
# FooDMe - A pipeline for Food DNA Metabarcoding <a href='https://github.com/CVUA-RRW/FooDMe'><img src='docs/logo.png' align="right" height="150" /></a>


![CI](https://github.com/CVUA-RRW/FooDMe/workflows/CI/badge.svg?branch=master)
[![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://opensource.org/licenses/BSD-3-Clause)
[![GitHub release (latest by date)](https://img.shields.io/github/v/release/CVUA-RRW/FooDMe)](https://github.com/CVUA-RRW/FooDMe/releases/latest)
[![DOI](https://zenodo.org/badge/296584559.svg)](https://zenodo.org/badge/latestdoi/296584559)
[![Snakemake](https://img.shields.io/badge/snakemake-≥6.3.0-brightgreen.svg?style=flat)](https://snakemake.readthedocs.io)

FooDMe is a reproducible and scalable snakemake workflow for the analysis of 
DNA metabarcoding experiments, with a special focus on food and feed samples.


## Usage 

The documentation for this workflow is hosted on our [homepage](https://cvua-rrw.github.io/FooDMe/).
If you use this workflow for research, you can cite this repo using the DOI above.

This workflow support snakemake´s standardized usage and is referenced in the 
[snakemake workflows catalog](https://snakemake.github.io/snakemake-workflow-catalog/).


