README:

Appendix_S1.csv
-specimen data for GBS analysis

Appendix_S2.csv
-morphological data in mm
-measurements are: SVL (snout-vent length), TL (tail length), AG (axilla-groin length), CW (chest width), FL (femur length [rather than hindlimb length]), HL (humerus length [rather than forelimb length]), SG (snout-gular length), TW (tail width at rear of vent), TO (length of third toe), FI (length of third finger), HW (head width), ED (eye diameter), IN (internarial distance), ES (eye-snout distance), ON (orbito-narial distance), IO (inter-orbital distance), and IC (inter-canthal distance)

desmo900_pisgah_233trees_122individuals.csv
-map of taxa in AHE trees to species/lineage

desmo900_pisgah_233trees_122individuals.tre
-NEWICK-format trees from AHE data (Pyron et al. 2022; Ecol. & Evol.)

pisgah_ingroup_c96_outfiles.zip
-ipyrad results for GBS assembly at 96% clustering, ingroup only
-when using these files, remove RAP1949_marmoratus

pisgah_outgroup_c96_outfiles.zip
-ipyrad results for GBS assembly at 96% clustering, includes outgroups
-when using these files, remove RAP1949_marmoratus