aemann01/domhain-v1.0.zip
aemann01-domhain-dcf5623
.gitignore
24 Bytes
2022-Diet_oral_microbiome
01-read_processing
DADA2_processing.ipynb
1.2 MB
README.md
2.7 kB
README.md
995 Bytes
2022-HIV_oral_microbiome
00-database_build
README.md
2.2 kB
01-read_processing
DADA2_processing.Rmd
5.8 kB
DADA2_processing.ipynb
1.7 MB
README.md
2.7 kB
fix_taxonomy.py
338 Bytes
02-diversity_analyses
README.md
126 Bytes
diversity_analyses.Rmd
20.9 kB
diversity_analyses.ipynb
4.0 MB
03-network_analyses
Network_comparison.ipynb
16.7 kB
README.md
135 Bytes
network_analysis.Rmd
24.0 kB
network_analysis.ipynb
9.5 MB
04-differential_abundance
README.md
25 Bytes
differential_abundance.ipynb
2.1 MB
05-phylo_trees
README.md
2.3 kB
summarize_seqtab.py
1.1 kB
06-pathogens
scratch.r
3.4 kB
07-age
age_analyses.ipynb
434.6 kB
08-low_smutans
intraindividual_diversity.ipynb
3.0 MB
09-ASV_analyses
ASV_analyses.ipynb
538.7 kB
10-siblings
sibling_analyses.ipynb
305.1 kB
siblings.txt
599 Bytes
README.md
2.1 kB
environment.yml
492 Bytes
README.md
10 Bytes