This README.txt file was generated on 06/16/2022 by Xiang Li

GENERAL INFORMATION

1. Title of Dataset: Iberian_weedy_rice.vcf

2. Author Information
	A. Principal Investigator Contact Information
		Name: Ana Caicedo
		Institution: University of Massachusetts 
		Address: 611 N. Pleasant St, Amherst, MA 01003
		Email: caicedo@umass.edu

	B. Associate or Co-investigator Contact Information
		Name: Xiang Li
		Institution: University of Massachusetts 
		Address: 611 N. Pleasant St, Amherst, MA 01003
		Email: xli4@umass.edu

	C. Alternate Contact Information
		Name: 
		Institution: 
		Address: 
		Email: 

3. Date of data collection (single date, range, approximate date) : NA

4. Geographic location of data collection: Spain and Portugal

5. Information about funding sources that supported the collection of the data: NSF IOS-1032023 and NSF IOS-1947609 


SHARING/ACCESS INFORMATION

1. Licenses/restrictions placed on the data: NA

2. Links to publications that cite or use the data: https://doi.org/10.1002/ppp3.10286

3. Links to other publicly accessible locations of the data: NA

4. Links/relationships to ancillary data sets: 

Raw reads for Genotyping by Sequencing (GBS) are openly available in the NCBI Short Read Archive (SRA) under IDs SRR17766549 to SRR17766467. 

5. Was data derived from another source? no

6. Recommended citation for this dataset: NA


DATA & FILE OVERVIEW

1. File List: Iberian_weedy_rice.vcf

2. Relationship between files, if important: NA

3. Additional related data collected that was not included in the current data package: NA

4. Are there multiple versions of the dataset? no


METHODOLOGICAL INFORMATION

1. Description of methods used for collection/generation of data: details in the publication. 

2. Methods for processing the data: details in the publication. 

3. Instrument- or software-specific information needed to interpret the data: text editor or vcftools 

4. Standards and calibration information, if appropriate: NA

5. Environmental/experimental conditions: NA

6. Describe any quality-assurance procedures performed on the data: details in the publication

7. People involved with sample collection, processing, analysis and/or submission: Xiang Li, Shulin Zhang


DATA-SPECIFIC INFORMATION FOR Iberian_weedy_rice.vcf

1. Number of variables: 481

2. Number of cases/rows: NA

3. Variable List: 

ID	Oryza type
1107	Cultivar
5803	Cultivar
16428	Cultivar
16657	Cultivar
27016	Cultivar
40748	Cultivar
52696	Cultivar
54287	Cultivar
62151	Cultivar
64519	Cultivar
64598	Cultivar
66069	Cultivar
66158	Cultivar
71333	Cultivar
71389	Cultivar
71481	Cultivar
71482	Cultivar
71483	Cultivar
71498	Cultivar
71500	Cultivar
71521	Cultivar
71547	Cultivar
71550	Cultivar
71563	Cultivar
71564	Cultivar
71586	Cultivar
71615	Cultivar
71634	Cultivar
71653	Cultivar
71655	Cultivar
73222	Cultivar
77579	Cultivar
78592	Cultivar
78594	Cultivar
78597	Cultivar
78599	Cultivar
79154	Cultivar
79552	Cultivar
79803	Cultivar
79805	Cultivar
79817	Cultivar
79820	Cultivar
79821	Cultivar
79829	Cultivar
80470	Wild rice
80724	Wild rice
81883	Wild rice
81990	Wild rice
82037	SE Asian weedy rice
82687	Cultivar
82691	Cultivar
83850	Cultivar
86449	SE Asian weedy rice
86478	South Asian weedy rice
86494	Wild rice
88001	Cultivar
88834	Wild rice
89191	SE Asian weedy rice
89235	SE Asian weedy rice
89240	SE Asian weedy rice
90675	Cultivar
90705	Cultivar
90734	NE Asian weedy rice
90740	NE Asian weedy rice
90752	NE Asian weedy rice
90754	NE Asian weedy rice
90785	NE Asian weedy rice
90818	NE Asian weedy rice
90819	NE Asian weedy rice
90822	NE Asian weedy rice
90835	NE Asian weedy rice
99599	SE Asian weedy rice
99601	SE Asian weedy rice
100206	South Asian weedy rice
100218	SE Asian weedy rice
100916	Wild rice
101974	Wild rice
102157	SE Asian weedy rice
103423	Wild rice
103821	Wild rice
103830	Wild rice
104406	SE Asian weedy rice
104455	SE Asian weedy rice
104496	SE Asian weedy rice
104501	Wild rice
104599	Wild rice
104624	Wild rice
104764	Wild rice
104812	Wild rice
104875	Wild rice
105353	SE Asian weedy rice
105362	SE Asian weedy rice
105706	Wild rice
105709	Wild rice
105720	Wild rice
105728	SE Asian weedy rice
105798	SE Asian weedy rice
105851	Wild rice
105855	Wild rice
105888	Wild rice
105898	Wild rice
105942	Wild rice
106086	Wild rice
106097	South Asian weedy rice
106103	Wild rice
106122	Wild rice
106126	Wild rice
106134	Wild rice
106166	Wild rice
106168	Wild rice
106169	Wild rice
106316	SE Asian weedy rice
106321	Wild rice
106332	SE Asian weedy rice
106338	SE Asian weedy rice
106431	SE Asian weedy rice
106453	Wild rice
106518	Wild rice
109634	Cultivar
112801	NE Asian weedy rice
112821	NE Asian weedy rice
112832	NE Asian weedy rice
113866	NE Asian weedy rice
115190	Cultivar
115298	NE Asian weedy rice
115306	NE Asian weedy rice
115580	NE Asian weedy rice
117123	NE Asian weedy rice
117124	NE Asian weedy rice
BG17	SE Asian weedy rice
BG20	SE Asian weedy rice
BG22	SE Asian weedy rice
GSOR-301011	Cultivar
GSOR-301069	Cultivar
GSOR-301070	Cultivar
GSOR-301095	Cultivar
GSOR-301097	Cultivar
GSOR-301123	Cultivar
GSOR-301144	Cultivar
GSOR-301169	Cultivar
GSOR-301199	Cultivar
GSOR-301201	Cultivar
GSOR-301251	Cultivar
GSOR-301252	Cultivar
GSOR-301274	Cultivar
GSOR-301288	Cultivar
GSOR-301303	Cultivar
GSOR-301304	Cultivar
GSOR-301305	Cultivar
GSOR-301312	Cultivar
GSOR-301313	Cultivar
GSOR-301315	Cultivar
GSOR-301316	Cultivar
GSOR-301317	Cultivar
GSOR-301318	Cultivar
GSOR-301319	Cultivar
GSOR-301326	Cultivar
GSOR-301328	Cultivar
GSOR-301329	Cultivar
GSOR-301331	Cultivar
GSOR-301335	Cultivar
GSOR-301336	Cultivar
GSOR-301341	Cultivar
GSOR-301342	Cultivar
GSOR-301343	Cultivar
GSOR-301344	Cultivar
GSOR-301345	Cultivar
GSOR-301356	Cultivar
GSOR-301357	Cultivar
GSOR-301359	Cultivar
GSOR-301363	Cultivar
GSOR-301382	Cultivar
GSOR-301390	Cultivar
GSOR-312012	Cultivar
GSOR-312016	Cultivar
GSOR-312017	Cultivar
IRGC-100915	South Asian weedy rice
IRGC-100923	Wild rice
IRGC-105696	Wild rice
IRGC-109364	Cultivar
IRGC-110311	Cultivar
IRGC-16163	Cultivar
IRGC-61895	Cultivar
IRGC-61899	Cultivar
IRGC-61902	Cultivar
IRGC-61923	Cultivar
IRGC-80737	Wild rice
IRGC-80759	Wild rice
IRGC-81941	Wild rice
IRGC-83301	Cultivar
IRGC-83344	Cultivar
IRGC-93214	Wild rice
IRGC-93215	Wild rice
IRGC-93217	Wild rice
IRGC-93219	Wild rice
IRGC-93285	Wild rice
IRGC-99545	Wild rice
IRRI-100200	South Asian weedy rice
IRRI-103790	South Asian weedy rice
IRRI-103791	South Asian weedy rice
IRRI-103826	South Asian weedy rice
IRRI-103829	South Asian weedy rice
IRRI-103832	South Asian weedy rice
IRRI-103833	South Asian weedy rice
IRRI-103834	South Asian weedy rice
IRRI-103842	South Asian weedy rice
IRRI-105311	South Asian weedy rice
IRRI-105330	South Asian weedy rice
IRRI-105337	South Asian weedy rice
IRRI-105341	South Asian weedy rice
IRRI-105343	South Asian weedy rice
IRRI-105351	South Asian weedy rice
IRRI-105869	South Asian weedy rice
IRRI-105874	South Asian weedy rice
IRRI-105877	South Asian weedy rice
IRRI-105880	South Asian weedy rice
IRRI-105892	South Asian weedy rice
IRRI-105907	South Asian weedy rice
IRRI-106030	South Asian weedy rice
IRRI-106032	South Asian weedy rice
IRRI-106043	South Asian weedy rice
IRRI-106076	South Asian weedy rice
IRRI-106120	South Asian weedy rice
IRRI-106137	South Asian weedy rice
IRRI-106228	South Asian weedy rice
IRRI-106401	South Asian weedy rice
IRRI-32399	Cultivar
IRRI-33888	Cultivar
IRRI-45011	Cultivar
IRRI-58286	Cultivar
IRRI-6663	Cultivar
IRRI-74723	South Asian weedy rice
IRRI-80539	South Asian weedy rice
IRRI-80568	South Asian weedy rice
IRRI-80591	South Asian weedy rice
IRRI-80614	South Asian weedy rice
IRRI-80626	South Asian weedy rice
IRRI-80723	South Asian weedy rice
IRRI-80741	South Asian weedy rice
IRRI-81902	South Asian weedy rice
IRRI-81908	South Asian weedy rice
IRRI-81910	South Asian weedy rice
IRRI-81914	South Asian weedy rice
IRRI-81924	South Asian weedy rice
IRRI-81929	South Asian weedy rice
IRRI-82008	South Asian weedy rice
IRRI-83256	South Asian weedy rice
IRRI-86477	South Asian weedy rice
IRRI-86478	South Asian weedy rice
IRRI-93178	South Asian weedy rice
IRRI-93179	South Asian weedy rice
IRRI-93189	South Asian weedy rice
IRRI-93293	South Asian weedy rice
IRRI-93297	South Asian weedy rice
IRRI-93302	South Asian weedy rice
IRRI-93303	South Asian weedy rice
IRRI-93305	South Asian weedy rice
IRRI-93307	South Asian weedy rice
IRRI-93313	South Asian weedy rice
IRRI-93320	South Asian weedy rice
KS02	SE Asian weedy rice
KS05	SE Asian weedy rice
MG04	SE Asian weedy rice
MG06	SE Asian weedy rice
MG20	SE Asian weedy rice
MK09	SE Asian weedy rice
MK10	SE Asian weedy rice
MS15	SE Asian weedy rice
MS18	SE Asian weedy rice
MUSC001	SE Asian weedy rice
MUSC007	SE Asian weedy rice
MUSC012	SE Asian weedy rice
MUSC017	SE Asian weedy rice
MUSC023	SE Asian weedy rice
MUSC026	SE Asian weedy rice
MUSC032	SE Asian weedy rice
MUSC038	SE Asian weedy rice
MUSC043	SE Asian weedy rice
MUSC052	SE Asian weedy rice
MUSC055	SE Asian weedy rice
MUSC060	SE Asian weedy rice
MUSC062	SE Asian weedy rice
MUSC065	SE Asian weedy rice
MUSC067	SE Asian weedy rice
MUSC069	SE Asian weedy rice
MUSC072	SE Asian weedy rice
MUSC079	SE Asian weedy rice
MUSC081	SE Asian weedy rice
MUSC086	SE Asian weedy rice
MUSC098	SE Asian weedy rice
MUSC100	SE Asian weedy rice
MUSC103	SE Asian weedy rice
MUSC106	SE Asian weedy rice
MUSC110	SE Asian weedy rice
MUSC114	SE Asian weedy rice
MUSC117	SE Asian weedy rice
MUSC119	SE Asian weedy rice
MUSC122	SE Asian weedy rice
MUSC128	SE Asian weedy rice
MUSC132	SE Asian weedy rice
MUSC134	SE Asian weedy rice
MUSC136	SE Asian weedy rice
MUSC138	SE Asian weedy rice
MUSC141	SE Asian weedy rice
MUSC142	SE Asian weedy rice
MUSC143	SE Asian weedy rice
MUSC145	SE Asian weedy rice
MUSC146	SE Asian weedy rice
MUSC150	SE Asian weedy rice
MUSC154	SE Asian weedy rice
MUSC161	SE Asian weedy rice
MUSC171	SE Asian weedy rice
MUSC177	SE Asian weedy rice
MUSC178	SE Asian weedy rice
MUSC187	SE Asian weedy rice
MUSC188	SE Asian weedy rice
MUSC200	Wild rice
MUSC201	Wild rice
MUSC202	Wild rice
MUSC203	Wild rice
MUSC207	Wild rice
MUSC208	Wild rice
MUSC209	Wild rice
MUSC218	Cultivar
MUSC219	Cultivar
MUSC220	Cultivar
MUSC221	Cultivar
MUSC225	SE Asian weedy rice
MUSC232	SE Asian weedy rice
MUSC234	SE Asian weedy rice
MUSC235	SE Asian weedy rice
MUSC237	SE Asian weedy rice
NT01	SE Asian weedy rice
NT05	SE Asian weedy rice
RR01	US weedy rice (SH)
RR02	US weedy rice (BHA2)
RR03	US weedy rice (BHA2)
RR04	US weedy rice (SH)
RR05	US weedy rice (BHA1)
RR13	US weedy rice (BHA2)
RR15	US weedy rice (SH)
RR16	US weedy rice (BHA1)
rr20	US weedy rice (BHA1)
RR21	US weedy rice (BHA1)
RR24	US weedy rice (BHA1)
RR25	US weedy rice (BHA2)
RR29	US weedy rice (BHA2)
RR42	US weedy rice (SH)
RR44	US weedy rice (BHA1)
RR51	US weedy rice (SH)
rr9	US weedy rice (SH)
sar01	Cultivar
sar02	Cultivar
sar03	Cultivar
sau01	Cultivar
sau02	Cultivar
sau03	Cultivar
sau04	Cultivar
sau07	Cultivar
sin02	Cultivar
sin03	Cultivar
sin04	Cultivar
sin9	Cultivar
str04	Cultivar
str10	Cultivar
SUS02	US Cultivar
SUS03	US Cultivar
SUS04	US Cultivar
SUS05	US Cultivar
SUS06	US Cultivar
SUS08	US Cultivar
SUS09	US Cultivar
SUS11	US Cultivar
SUS12	US Cultivar
TA06	SE Asian weedy rice
TA10	SE Asian weedy rice
TA22	SE Asian weedy rice
TS09	SE Asian weedy rice
TS15	SE Asian weedy rice
TW05	SE Asian weedy rice
TW13	SE Asian weedy rice
TW16	SE Asian weedy rice
101148	Outgroup
104081	Outgroup
104119	Outgroup
IRGC_93261	Outgroup
AN-08-1	 Iberian cultivar 
AN-08-5	 Iberian cultivar 
AN-08-6	 Iberian cultivar 
AN-08-8	 Iberian cultivar 
AN-08-9	 Iberian cultivar 
AN-09-1	 Iberian cultivar 
AN-09-13	 Iberian cultivar 
AN-09-17	 Iberian cultivar 
AN-09-22	 Iberian cultivar 
AN-09-24	 Iberian cultivar 
AN-09-27	 Iberian cultivar 
AN-09-3	     Iberian cultivar 
AN-09-30	 Iberian cultivar 
AN-09-31	 Iberian cultivar 
AN-09-34	 Iberian cultivar 
AN-09-36	 Iberian cultivar 
AN-09-38	 Iberian cultivar 
AN-09-40	 Iberian cultivar 
AN-09-43	 Iberian cultivar 
AN-09-46	 Iberian cultivar 
AN-09-7	          Iberian cultivar 
AS-09-103	 Iberian weedy rice 
ASF-08-48	 Iberian weedy rice 
ASF-08-49	 Iberian weedy rice 
ASF-08-52	 Iberian weedy rice 
ASF-09-12	 Iberian weedy rice 
ASF-09-14	 Iberian weedy rice 
ASF-09-21	 Iberian weedy rice 
ASF-09-24	 Iberian weedy rice 
ASF-09-27	 Iberian weedy rice 
ASF-09-29	 Iberian weedy rice 
ASF-09-33	 Iberian weedy rice 
ASF-09-36	 Iberian weedy rice 
ASF-09-38	 Iberian weedy rice 
ASF-09-3	         Iberian weedy rice 
ASF-09-7	         Iberian weedy rice 
AS-08-17	         Iberian weedy rice 
AS-09-118	 Iberian weedy rice 
AS-09-123	 Iberian weedy rice 
AS-09-135	 Iberian weedy rice 
AS-09-137	 Iberian weedy rice 
AS-09-147	 Iberian weedy rice 
AS-09-155	 Iberian weedy rice 
AS-09-156	 Iberian weedy rice 
AS-09-162	 Iberian weedy rice 
AS-09-1	     Iberian weedy rice 
AS-09-33	     Iberian weedy rice 
AS-09-38	     Iberian weedy rice 
AS-09-49	     Iberian weedy rice 
AS-09-7	     Iberian weedy rice 
AS-09-90	     Iberian weedy rice 
AS-09-93	     Iberian weedy rice 
AS-09-96	     Iberian weedy rice 
AS-11-1	     Iberian weedy rice 
ASF-09-10	 Iberian weedy rice 
AS-09-104	 Iberian weedy rice 
AS-09-105	 Iberian weedy rice 
AS-09-56	         Iberian weedy rice 
AS-09-57	         Iberian weedy rice 
ASF-08-50	 Iberian weedy rice 
ASF-09-19	 Iberian weedy rice 
ASF-09-23	 Iberian weedy rice 
ASF-09-43	 Iberian weedy rice 
ASF-09-45	 Iberian weedy rice 
ASF-09-48	 Iberian weedy rice 
ASF-09-54	 Iberian weedy rice 
ASF-09-56	 Iberian weedy rice 
ASF-09-58	 Iberian weedy rice 
ASF-09-61	 Iberian weedy rice 
ASF-09-6	         Iberian weedy rice 
AS-08-13i	 Iberian weedy rice 
AS-08-29	          Iberian weedy rice 
AS-08-37e	 Iberian weedy rice 
AS-08-4e	          Iberian weedy rice 
AS-08-6d	          Iberian weedy rice 
AS-09-115	 Iberian weedy rice 
AS-09-129	 Iberian weedy rice 
AS-09-131	 Iberian weedy rice 
AS-09-148	 Iberian weedy rice 
AS-09-14	 Iberian weedy rice 
AS-09-16	 Iberian weedy rice 
AS-09-19	 Iberian weedy rice 
AS-09-29	 Iberian weedy rice 
AS-09-3	 Iberian weedy rice 
AS-09-54	 Iberian weedy rice 
AS-09-58	 Iberian weedy rice 
AS-09-65	 Iberian weedy rice 
AS-09-68	 Iberian weedy rice 
AS-09-74	 Iberian weedy rice 
AS-09-76	 Iberian weedy rice 
AS-09-88	 Iberian weedy rice 
AS-08-25	 Iberian weedy rice 
AS-08-8	 Iberian weedy rice 
AS-09-134 Iberian weedy rice 
AS-09-70	 Iberian weedy rice 


4. Missing data codes: NA

5. Specialized formats or other abbreviations used: NA