{
   "models":[
      {
         "id":"mask_rcnn_presegmentation",
         "name":"Mask rcnn presegmentation",
         "description":"Biomag's Kaggle presegmentation model.",
         "type":"1",
         "model_filename":"mask_rcnn_presegmentation.h5",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "detection_confidence":"0.6",
         "default_image_size":"512",
         "samples":[
         	"presegmentation.jpg"
         ]
      },
      {
         "id":"general_nucleus",
         "name":"General nucleus",
         "description":"Default method. Works **generally** well for fluorescently (e.g. DAPI) stained nuclei and brightfield tissue (e.g. Hematoxylin-eosin stained) nuclei.",
         "type":"1",
         "model_filename":"mask_rcnn_general.h5",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "detection_confidence":"0.6",
         "default_image_size":"512",
         "samples":[
            "general_nucleus.png"
         ]
      },
      {
         "id":"fluorescent_nucleus",
         "name":"Fluorescent nucleus",
         "description":"**Fluorescent** (DAPI, Hoechst etc.) labelled nuclei detection method. Optimal for **homogeneously sized and distributed** nuclei.",
         "type":"1",
         "model_filename":"mask_rcnn_general.h5",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "detection_confidence":"0.6",
         "default_image_size":"512",
         "samples":[
            
         ]
      },
      {
         "id":"tiny_clumped_fluorescent_nucleus",
         "name":"Tiny&clumped fluorescent nucleus",
         "description":"**Fluorescent** (DAPI, Hoechst etc.) labelled nuclei detection method. Optimal for **tiny and clumped (crowded)** nuclei.",
         "type":"1",
         "model_filename":"mask_rcnn_general.h5",
         "detection_max_instances":"1000",
         "detection_confidence":"0.5",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "default_image_size":"512",
         "samples":[
            "tiny_clumped_fluorescent_nucleus.png"
         ]
      },
      {
         "id":"tissue_nucleus",
         "name":"Tissue nucleus",
         "description":"Finds nuclei on **brightfield** (e.g. H&E or IHC stained) tissue sample images. **General** method for tissues.",
         "type":"1",
         "model_filename":"mask_rcnn_general.h5",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "detection_confidence":"0.6",
         "default_image_size":"512",
         "samples":[
            
         ]
      },
      {
         "id":"fluorescent_cytoplasm",
         "name":"Fluorescent cytoplasm",
         "description":"**Cytoplasm** detection method on fluorescent images. Optimal for actin and/or tubulin markers.",
         "type":"1",
         "model_filename":"mask_rcnn_cytoplasm.h5",
         "detection_confidence":"0.2",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "default_image_size":"512",
         "samples":[
            "fluorescent_cytoplasm.png"
         ]
      },
      {
         "id":"tissue_nucleus_IHC",
         "name":"Tissue nucleus IHC",
         "description":"Finds nuclei on **brightfield** tissue sample images. Optimal for **pale IHC** stain",
         "type":"1",
         "model_filename":"mask_rcnn_tissue_bluebrown.h5",
         "detection_max_instances":"1000",
         "detection_confidence":"0.2",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "default_image_size":"512",
         "samples":[
            "tissue_nucleus_IHC.png"
         ]
      },
      {
         "id":"tissue_nucleus_H_E",
         "name":"Tissue nucleus H&E",
         "description":"Finds nuclei on **brightfield** tissue sample images. Optimal for **H&E** stain.",
         "type":"1",
         "model_filename":"mask_rcnn_tissue_pink.h5",
         "detection_max_instances":"1000",
         "detection_confidence":"0.2",
         "trained_object_size":"80",
         "padding":"0.05",
         "dilation":"1",
         "cavity_filling":"True",
         "default_image_size":"512",
         "samples":[
            "tissue_nucleus_H_E.png"
         ]
      }
   ]
}