SysBioChalmers/EPO_GFP-1.3.zip
SysBioChalmers-EPO_GFP-1558ef8
LICENSE
1.1 kB
README.md
833 Bytes
data
35samples_TPM.txt
9.1 MB
35samples_counts.txt
8.1 MB
README.md
217 Bytes
avtpm.txt
5.3 MB
results
.DS_Store
10.2 kB
35samples_corel_coef_spear_epo_thr_0.5.txt
6.5 kB
35samples_corel_coef_spear_gfp_thr_0.5.txt
5.1 kB
35samples_corel_spear_epo_thr_0.5.txt
1.2 kB
35samples_corel_spear_gfp_thr_0.5.txt
904 Bytes
DE_analysis
EPO7_vs_CTRL293Free.txt
3.4 kB
EPO8_vs_CTRL293Free.txt
3.7 kB
EPOB9_vs_CTRL293Free.txt
7.1 kB
EPOF21_EPO7.txt
2.3 MB
EPOF21_EPO8.txt
2.5 MB
EPOF21_EPOB9.txt
2.2 MB
EPOF21_EPOI2.txt
2.2 MB
EPOF21_EPOpoly.txt
2.2 MB
EPOF21_vs_CTRL293Free.txt
7.0 kB
EPOI2_vs_CTRL293Free.txt
8.8 kB
EPOpoly_vs_CTRL293Free.txt
2.9 kB
GFP1_vs_CTRL293F.txt
3.9 kB
GFP25_vs_CTRL293F.txt
2.4 kB
GFP26_vs_CTRL293F.txt
5.7 kB
GFP27_vs_CTRL293F.txt
2.4 kB
GFP28_vs_CTRL293F.txt
4.1 kB
GFP29_vs_CTRL293F.txt
2.2 kB
GFP3_vs_CTRL293F.txt
3.0 kB
GFPpoly_vs_CTRL293F.txt
67 Bytes
pairwise_vs_cntrl.R
3.6 kB
EPO_pairwise_comparison.xlsx
6.5 MB
EPO_vs_f21_goSlimSecretion.xlsx
10.4 kB
ER_genes_f21_vs_epo8.txt
220.7 kB
ER_genes_f21_vs_epo8.xlsx
191.1 kB
ER_genes_f21_vs_epo8_sig.txt
17.6 kB
ER_genes_f21_vs_epo8_sig_pos.txt
8.0 kB
F21_vs_cntrl_wilcoxon_nperm_e4_c5bpv70.RData
2.6 MB
F21_vs_epo7_wilcoxon_nperm_e4_extended_secretion_gene_sets.RData
829.9 kB
F21_vs_epo8_wilcoxon_nperm_e4_extended_secretion_gene_sets.RData
872.5 kB
F21_vs_epob9_wilcoxon_nperm_e4_extended_secretion_gene_sets.RData
803.6 kB
F21_vs_epoi2_wilcoxon_nperm_e4_extended_secretion_gene_sets.RData
805.3 kB
F21_vs_epopoly_wilcoxon_nperm_e4_extended_secretion_gene_sets.RData
813.6 kB
correlation analysis
.DS_Store
8.2 kB
35samples_corel_coef_spear_epo_thr_0.5.txt
6.5 kB
35samples_corel_coef_spear_gfp_thr_0.5.txt
5.1 kB
35samples_corel_pear_epo_neg_thr_0.5.txt
1.2 kB
35samples_corel_pear_epo_pos_thr_0.5.txt
2.1 kB
35samples_corel_pear_epo_thr_0.5.txt
17.7 kB
35samples_corel_pear_gfp_neg_thr_0.5.txt
708 Bytes
35samples_corel_pear_gfp_pos_thr_0.5.txt
74 Bytes
35samples_corel_spear_epo_neg_thr_0.5.txt
805 Bytes
35samples_corel_spear_epo_pos_thr_0.5.txt
405 Bytes
35samples_corel_spear_epo_thr_0.5.txt
1.2 kB
35samples_corel_spear_gfp_neg_thr_0.5.txt
797 Bytes
35samples_corel_spear_gfp_pos_thr_0.5.txt
107 Bytes
35samples_corel_spear_gfp_thr_0.5.txt
904 Bytes
35samples_corel_spearman_thr_0.5.txt
29.7 kB
epo_net_spearman.csv
30.0 kB
epo_vs_cnt_pairwise_IPA_l2fc_0.58_padj_0.05.txt
25.4 kB
f21_vs_epo_sig_all_0.05.txt
51.8 kB
f21_vs_epo_sig_neg_0.05.txt
27.4 kB
f21_vs_epo_sig_pos_0.05.txt
24.4 kB
gene_table_F21_epo8_ER.txt
49.3 kB
gfp_net_spearman.csv
19.5 kB
gfp_vs_cnt_pairwise_IPA_l2fc_0.58_padj_0.05.txt
44.4 kB
heatmap_mix_f21_goSlimSecretion_2.txt
2.4 kB
heatmap_pro_vs_cnt_pairwise.svg
31.7 kB
new_epo_net.txt
20.3 kB
new_gfp_net.txt
27.5 kB
sig_ER_part_0.05_EPOF21_Vs_EPOs.txt
20.1 kB
sig_ER_stress_0.05.txt
5.9 kB
sig_ER_stress_0.05_norCounts.txt
3.6 kB
string_interactions_short_spearman_confidence_0.9_1st_Intractors.tsv
6.4 kB
subnetwork_epo.sif
30.8 kB
subnetwork_gfp.sif
42.7 kB
sum_epo_ER_sig_genes_p.05_l1.txt
1.8 kB
tfam_tpm.svg
20.8 kB
tfam_tpm_prod_epo.svg
12.4 kB
scripts
.DS_Store
8.2 kB
DE_analysis.R
4.2 kB
Figure_1_BCD.R
6.1 kB
Figure_1_E.R
5.0 kB
Figure_1_F.R
3.9 kB
Figure_1_G.R
3.3 kB
Figure_2.R
12.0 kB
Figure_4_A.R
10.2 kB
Figure_4_B.R
5.2 kB
Figure_S1_ABCD.R
5.7 kB
Figure_S1_EF.R
3.9 kB
Figure_S1_G.R
2.5 kB
Figure_S4_E.R
3.6 kB
Figure_S6_A.R
2.6 kB
Figure_S6_C.R
1.4 kB
Figure_S8_AB.R
2.6 kB
Figure_S8_CDEF.R
3.8 kB