RNAseq_gene_ID	cluster	cluster_membership	Dmel	Dmel_name	Dmel_description	Dmel_score	Dmel_evalue	Dmel_RBBH	Hsap	Hsap_name	Hsap_description	Hsap_score	Hsap_evalue	Hsap_RBBH
MSTRG.33755	cl_1	0.8025241	Q9W0K4	bab2	Protein bric-a-brac 2	102	1.86E-023	No	Q9NVX7	KBTBD4	Kelch repeat and BTB domain-containing protein 4	66.2	8.75E-012	No
MSTRG.33828	cl_1	0.8389047	Q9W0K7, Q9W0K7	bab1, bab1	Protein bric-a-brac 1, Protein bric-a-brac 1	122, 122	2.91e-29, 2.91e-29	No, No	Q9NVX7, Q9NVX7	KBTBD4, KBTBD4	Kelch repeat and BTB domain-containing protein 4, Kelch repeat and BTB domain-containing protein 4	69.3, 69.3	2.41e-12, 2.41e-12	No, No
MSTRG.41284	cl_1	0.9420388	Q8I8V0	Ada2b	Transcriptional adapter 2B	211	1.27E-062	Yes	Q86TJ2	TADA2B	Transcriptional adapter 2-beta	198	1.04E-058	Yes
MSTRG.45093	cl_1	0.8262447	O62609	Med	Mothers against decapentaplegic homolog	624	1.46E-100	Yes	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	584	5.61E-101	Yes
mikado.phaw_50.058832G2	cl_2	0.9676834	Q8I7Z8	ham	Transcription factor hamlet	179.7	1.91E-009	No	Q9H4Z2	ZNF335	Zinc finger protein 335	263.4	1.23E-008	No
MSTRG.1609	cl_2	0.9919048	P15330	dl	Embryonic polarity protein dorsal	105	1.54E-022	No	Q13127	REST	RE1-silencing transcription factor	199.2	2.38E-016	No
MSTRG.28631	cl_2	0.8952974	A0A0B4KFC4	rib	Ribbon, isoform C	49.3	5.00E-006	No	P17010	ZFX	Zinc finger X-chromosomal protein	199	8.44E-006	No
MSTRG.29738	cl_2	0.9730606	A0A0B4KGW2	sr	Stripe, isoform D	83.9	0.000372	No	Q16670	ZSCAN26	Zinc finger and SCAN domain-containing protein 26	88.2	3.44E-008	No
MSTRG.3081	cl_2	0.8188797	Q9VJ27	Dmel\CG10431	Uncharacterized protein, isoform A	40.4	0.00079	No	Q9NVV9	THAP1	THAP domain-containing protein 1	56.6	2.47E-009	No
MSTRG.31429	cl_2	0.9956623	Q9W0K7	bab1	Protein bric-a-brac 1	86.7	4.32E-018	No	Q8NDX6	ZNF740	Zinc finger protein 740	106.3	2.38E-012	No
MSTRG.31478	cl_2	0.8529983	Q9V9V8	Dmel\CG1792	LP07209p	98.2	3.94E-011	No	Q9P243	ZFAT	Zinc finger protein ZFAT	220.2	1.50E-012	No
MSTRG.31479	cl_2	0.8299262	P05084	hb	Protein hunchback	116.3	6.65E-006	No	Q8NI51	CTCFL	Transcriptional repressor CTCFL	186.4	5.22E-006	No
MSTRG.31841	cl_2	0.9415476	O46339	hth	Homeobox protein homothorax	142	3.19E-039	No	Q96KN3	PKNOX2	Homeobox protein PKNOX2	167	1.31E-048	Yes
MSTRG.31990	cl_2	0.8651652	Q8I7Z8	ham	Transcription factor hamlet	152.4	4.48E-005	No	Q5T619	ZNF648	Zinc finger protein 648	233.6	1.60E-006	No
MSTRG.35576	cl_2	0.98715	Q24151	Stat92E	Signal transducer and transcription activator	394	1.65E-125	No	P51692	STAT5B	Signal transducer and activator of transcription 5B	641	0	Yes
MSTRG.41573	cl_2	0.9063567	P15370	eg	Protein embryonic gonad	194	1.05E-055	No	Q14995	NR1D2	Nuclear receptor subfamily 1 group D member 2	91.7	2.93E-019	No
MSTRG.43221	cl_2	0.936423	P11536	Eip74EF	Ecdysone-induced protein 74EF isoform B	78.6	1.48E-015	No	Q9NZC4	EHF	ETS homologous factor	96.7	2.43E-022	No
MSTRG.5903	cl_2	0.9402996	Q01070	E(spl)mgamma-HLH	Enhancer of split mgamma protein	123	1.63E-033	No	Q14469	HES1	Transcription factor HES-1	89	5.28E-020	No
MSTRG.5906	cl_2	0.9828222	Q01069	E(spl)mbeta-HLH	Enhancer of split mbeta protein	139	1.06E-040	No	Q14469	HES1	Transcription factor HES-1	112	3.59E-029	No
FUSION_DUP_115	cl_2	0.9666639	Q7KRI2, A0A0B4KI34, P05084	lolal, cindr, hb	Longitudinals lacking protein-like, CIN85 and CD2AP related, isoform J, Protein hunchback	113, 25.8, 146.3	5.5e-33, 8.1, 4.66e-17	No, No, No	Q53G59, O94885, Q9UL36	KLHL12, SASH1, ZNF236	Kelch-like protein 12, SAM and SH3 domain-containing protein 1, Zinc finger protein 236	65.1, 27.7, 925.5	9.47e-13, 3, 5.79e-17	No, No, No
FUSION_DUP_1619	cl_2	0.9497099	Q9VZU5, Q24174, Q24174	BtbVII, ab, ab	BTB domain-containing protein, Protein abrupt, Protein abrupt	89.7, 84, 91.7	6.14e-19, 8.76e-21, 2.16e-23	No, No, No	O00110, Q6TFL4, Q6TFL4	OVOL3, KLHL24, KLHL24	Putative transcription factor ovo-like protein 3, Kelch-like protein 24, Kelch-like protein 24	59.3, 46.6, 53.9	5.07e-10, 1.41e-07, 5.55e-10	No, No, No
FUSION_DUP_1749	cl_2	0.8375198	O17468, Q0E9A0, Q9VWJ6	Hira, Dmel\CG13148, rictor	Protein HIRA homolog, FI21293p1, FI03615p	26.9, 39.3, 28.1	1.4, 0.000738, 1.9	No, No, No	Q14766, Q63HK3, P11137	LTBP1, ZKSCAN2, MAP2	Latent-transforming growth factor beta-binding protein 1, Zinc finger protein with KRAB and SCAN domains 2, Microtubule-associated protein 2	26.9, 61.6, 28.5	1.9, 0.44, 2.1	No, No, No
FUSION_DUP_97	cl_2	0.9938691	M9PJG1, Q867Z4, Q867Z4	Sp1, lola, lola	Sp1, isoform F, Longitudinals lacking protein, isoforms F/I/K/T, Longitudinals lacking protein, isoforms F/I/K/T	83.6, 166.2, 166.2	1.84e-08, 4.19e-32, 4.19e-32	No, No, No	P08047, Q6TFL4, Q6TFL4	SP1, KLHL24, KLHL24	Transcription factor Sp1, Kelch-like protein 24, Kelch-like protein 24	52.4, 62, 62	1.91e-09, 3.45e-10, 3.45e-10	No, No, No
FUSION_DUP_1111	cl_2	0.9573426	Q9W4B2, Q9VHI3, Q9VHI3	Vsx1, Dmel\CG11986, Dmel\CG11986	FI01127p, LD08328p, LD08328p	25.8, 136, 99.4	4.4, 1.92e-38, 1.92e-25	No, Yes, No	Q9UPQ7, Q96FZ2, Q96FZ2	PDZRN3, HMCES, HMCES	E3 ubiquitin-protein ligase PDZRN3, Abasic site processing protein HMCES, Abasic site processing protein HMCES	28.5, 127, 99.4	0.87, 5.54e-35, 2.51e-25	No, Yes, No
FUSION_DUP_793	cl_2	0.9903364	P40427, P40427, P40427	exd, exd, exd	Homeobox protein extradenticle, Homeobox protein extradenticle, Homeobox protein extradenticle	47.4, 416, 416	5.43e-08, 4.76e-147, 4.76e-147	No, Yes, Yes	P40424, P40425, P40425	PBX1, PBX2, PBX2	Pre-B-cell leukemia transcription factor 1, Pre-B-cell leukemia transcription factor 2, Pre-B-cell leukemia transcription factor 2	46.6, 381, 381	1.6e-07, 3.41e-132, 3.41e-132	No, Yes, Yes
MSTRG.30257	cl_2	0.9975042	Q9V406	crp	BHLH domain-containing protein	149.7	5.30E-026	Yes	Q01664	TFAP4	Transcription factor AP-4	165.8	3.13E-035	Yes
MSTRG.30618	cl_2	0.8568348	Q9VID3	crc	BZIP domain-containing protein	53.9	5.66E-008	Yes	P18848	ATF4	Cyclic AMP-dependent transcription factor ATF-4	64.7	2.25E-011	Yes
MSTRG.31849	cl_2	0.9861915	Q9VM61	Dmel\CG13775	BED-type domain-containing protein	217	5.81E-061	Yes	O75132	ZBED4	Zinc finger BED domain-containing protein 4	198	1.99E-052	Yes
MSTRG.32972	cl_2	0.8329372	P04197	Myb	Myb protein	308.3	1.22E-075	Yes	P10242	MYB	Transcriptional activator Myb	334.7	1.41E-079	Yes
MSTRG.33004	cl_2	0.9069654	Q9VB47	bigmax	BHLH domain-containing protein	181	4.27E-057	Yes	Q9UH92	MLX	Max-like protein X	182	3.68E-057	Yes
MSTRG.4054	cl_2	0.8463935	P42124	E(z)	Histone-lysine N-methyltransferase E(z)	605	3.83E-100	Yes	Q15910	EZH2	Histone-lysine N-methyltransferase EZH2	580	5.03E-095	Yes
MSTRG.45480	cl_2	0.9986814	P10083	ac	Achaete-scute complex protein T5	85.5	1.73E-019	Yes	P50553	ASCL1	Achaete-scute homolog 1	79	9.32E-017	Yes
FUSION_DUP_245	cl_2	0.9963978	A0A0B4KFC0, A0A0B4KFC0	shn, shn	Schnurri, isoform F, Schnurri, isoform F	858.7, 34.3	8.77e-69, 0.11	Yes, No	P15822, Q8NAM6	HIVEP1, ZSCAN4	Zinc finger protein 40, Zinc finger and SCAN domain-containing protein 4	447.3, 32.3	8.2e-46, 0.57	Yes, No
FUSION_DUP_72	cl_2	0.9964799	B7YZU4, B7YZU4	Camta, Camta	Calmodulin-binding transcription activator, isoform F, Calmodulin-binding transcription activator, isoform F	649, 216	2.45e-105, 2.47e-60	Yes, No	Q9Y6Y1, Q9Y6Y1	CAMTA1, CAMTA1	Calmodulin-binding transcription activator 1, Calmodulin-binding transcription activator 1	442, 135	1.46e-72, 3.35e-33	Yes, No
FUSION_DUP_1145	cl_2	0.9550691	Q24312, Q24312, Q24312	ewg, ewg, ewg	DNA-binding protein Ewg, DNA-binding protein Ewg, DNA-binding protein Ewg	325, 325, 312.4	3.39e-105, 3.39e-105, 8.72e-65	Yes, Yes, No	Q16656, Q16656, Q16656	NRF1, NRF1, NRF1	Nuclear respiratory factor 1, Nuclear respiratory factor 1, Nuclear respiratory factor 1	301, 301, 196	3.54e-98, 3.54e-98, 4.14e-58	Yes, Yes, No
MSTRG.42977	cl_2	0.945273	Q7KRI2, Q7KRI2, Q7KRI2, Q7KRI2	lolal, lolal, lolal, lolal	Longitudinals lacking protein-like, Longitudinals lacking protein-like, Longitudinals lacking protein-like, Longitudinals lacking protein-like	166, 166, 166, 166	1.15e-50, 1.15e-50, 1.15e-50, 1.15e-50	Yes, Yes, Yes, Yes	Q9NVX7, Q9NVX7, Q9NVX7, Q9NVX7	KBTBD4, KBTBD4, KBTBD4, KBTBD4	Kelch repeat and BTB domain-containing protein 4, Kelch repeat and BTB domain-containing protein 4, Kelch repeat and BTB domain-containing protein 4, Kelch repeat and BTB domain-containing protein 4	65.1, 65.1, 65.1, 65.1	2.6e-11, 2.6e-11, 2.6e-11, 2.6e-11	No, No, No, No
mikado.phaw_50.283826G2132	cl_3	0.9124904	P08970	su(Hw)	Protein suppressor of hairy wing	110.1	8.82E-005	No	Q9UEG4	ZNF629	Zinc finger protein 629	110.5	1.93E-005	No
MSTRG.215	cl_3	0.8988093	P32028	fd96Ca	Fork head domain-containing protein FD4	226	3.46E-072	No	Q99853	FOXB1	Forkhead box protein B1	209	8.84E-066	No
MSTRG.25012	cl_3	0.8409562	P08155	Kr-h1	Krueppel homolog 1	275.9	1.14E-024	No	Q2QGD7	ZXDC	Zinc finger protein ZXDC	394.7	4.94E-051	Yes
MSTRG.29588	cl_3	0.9720365	Q7KRI2	lolal	Longitudinals lacking protein-like	143	3.09E-040	No	P41182	BCL6	B-cell lymphoma 6 protein	330.1	1.75E-015	No
MSTRG.34879	cl_3	0.9152178	Q9W0K7	bab1	Protein bric-a-brac 1	132	5.88E-035	No	O43829	ZBTB14	Zinc finger and BTB domain-containing protein 14	70.1	1.15E-013	No
MSTRG.36351	cl_3	0.8471841	Q9W0K4	bab2	Protein bric-a-brac 2	130	1.35E-032	No	Q53G59	KLHL12	Kelch-like protein 12	73.2	9.68E-014	No
MSTRG.44707	cl_3	0.9984376	P04197	Myb	Myb protein	49.3	4.55E-006	No	Q9Y222	DMTF1	Cyclin-D-binding Myb-like transcription factor 1	300	4.43E-090	Yes
MSTRG.45771	cl_3	0.9997857	P08155	Kr-h1	Krueppel homolog 1	316	1.39E-051	No	Q6NX49	ZNF544	Zinc finger protein 544	1598.7	3.64E-051	No
MSTRG.533	cl_3	0.9465188	Q9W0K7	bab1	Protein bric-a-brac 1	133	3.63E-033	No	Q9HC78	ZBTB20	Zinc finger and BTB domain-containing protein 20	252.9	8.87E-029	No
MSTRG.7894	cl_3	0.8026215	Q9VHY5	Taf7	Transcription initiation factor TFIID subunit 7	111	6.38E-027	No	Q15545	TAF7	Transcription initiation factor TFIID subunit 7	140.5	4.65E-018	No
MSTRG.7962	cl_3	0.9134397	Q7KRI2	lolal	Longitudinals lacking protein-like	91.7	6.48E-022	No	Q8N8E2	ZNF513	Zinc finger protein 513	188.2	4.45E-009	No
mikado.phaw_50.282260aG1078	cl_3	0.994211	A0A0B4LGG8	Dmel\CG3328	Uncharacterized protein, isoform C	461.9	3.68E-130	Yes	Q9Y2G1	MYRF	Myelin regulatory factor	493	3.31E-146	Yes
mikado.phaw_50.283874aG320	cl_3	0.9166614	Q86P06	NfI	CTF/NF-I domain-containing protein	443.3	2.47E-116	Yes	O00712	NFIB	Nuclear factor 1 B-type	305	1.35E-096	Yes
MSTRG.1682	cl_3	0.869069	Q9Y109	Nulp1	BcDNA.GH11023	200	8.91E-055	Yes	Q9BQ70	TCF25	Transcription factor 25	226	4.21E-064	Yes
MSTRG.29028	cl_3	0.9188705	Q9VZF2	cg15011	LD05244p	557	0	Yes	Q6ZNB6	NFXL1	NF-X1-type zinc finger protein NFXL1	585	0	Yes
MSTRG.30797	cl_3	0.9989878	P45447	Eip78C	Ecdysone-induced protein 78C	380.3	1.88E-051	Yes	Q92753	RORB	Nuclear receptor ROR-beta	181	1.35E-050	No
MSTRG.31259	cl_3	0.8932411	Q27350	so	Protein sine oculis	358	1.67E-122	Yes	Q15475	SIX1	Homeobox protein SIX1	369	1.93E-128	Yes
MSTRG.33617	cl_3	0.9632338	A0A0B4K6N2	FoxP	Fork-head domain-containing protein	221	7.36E-065	Yes	Q9H334	FOXP1	Forkhead box protein P1	204	1.37E-046	Yes
MSTRG.34257	cl_3	0.995204	Q24119	trh	Protein trachealess	506	1.53E-165	Yes	Q8IXF0	NPAS3	Neuronal PAS domain-containing protein 3	395	4.06E-124	Yes
MSTRG.41571	cl_3	0.9894325	P19538	ci	Transcriptional activator cubitus interruptus	573.8	9.30E-156	Yes	P10071	GLI3	Transcriptional activator GLI3	461.2	1.48E-125	Yes
MSTRG.43392	cl_3	0.9999057	Q7M3M8	cas	Transcription factor castor	758.9	1.58E-098	Yes	Q86V15	CASZ1	Zinc finger protein castor homolog 1	2132.2	1.78E-084	Yes
MSTRG.26726	cl_3	0.9956196	O16117, O16117	sv, sv	Paired domain-containing protein, Paired domain-containing protein	358.6, 358.6	1.42e-81, 1.42e-81	Yes, Yes	Q02548, Q02548	PAX5, PAX5	Paired box protein Pax-5, Paired box protein Pax-5	265, 265	2.49e-82, 2.49e-82	Yes, Yes
MSTRG.42781	cl_3	0.9932908	Q9W0K7, Q9W0K7	bab1, bab1	Protein bric-a-brac 1, Protein bric-a-brac 1	428, 428	1e-72, 1e-72	Yes, Yes	B2RXH4, B2RXH4	BTBD18, BTBD18	BTB/POZ domain-containing protein 18, BTB/POZ domain-containing protein 18	65.1, 65.1	6.02e-11, 6.02e-11	No, No
MSTRG.28157	cl_3	0.9853753	Q8SX87, Q8SX87, Q8SX87	Atf6, Atf6, Atf6	BZIP domain-containing protein, BZIP domain-containing protein, BZIP domain-containing protein	81.6, 81.6, 81.6	4.19e-16, 4.19e-16, 4.19e-16	Yes, Yes, Yes	P18850, P18850, P18850	ATF6, ATF6, ATF6	Cyclic AMP-dependent transcription factor ATF-6 alpha, Cyclic AMP-dependent transcription factor ATF-6 alpha, Cyclic AMP-dependent transcription factor ATF-6 alpha	112, 112, 112	7.08e-26, 7.08e-26, 7.08e-26	Yes, Yes, Yes
mikado.phaw_50.283875aG310	cl_4	0.9572214	B7YZU4	Camta	Calmodulin-binding transcription activator, isoform F	172	3.24E-049	No	Q9Y6Y1	CAMTA1	Calmodulin-binding transcription activator 1	124	3.36E-032	No
MSTRG.30830	cl_4	0.8966608	Q02637	slbo	CCAAT/enhancer-binding protein	40	6.96E-005	No	P53567	CEBPG	CCAAT/enhancer-binding protein gamma	50.8	7.28E-009	No
MSTRG.34465	cl_4	0.999465	Q7KRI2	lolal	Longitudinals lacking protein-like	95.5	2.08E-023	No	Q5TC79	ZBTB37	Zinc finger and BTB domain-containing protein 37	90.5	6.40E-019	No
MSTRG.37809	cl_4	0.9985414	Q867Z4	lola	Longitudinals lacking protein, isoforms F/I/K/T	162.9	4.00E-032	No	Q13127	REST	RE1-silencing transcription factor	270.3	9.42E-022	No
MSTRG.40138	cl_4	0.9999582	P06602	eve	Segmentation protein even-skipped	116	3.23E-029	No	Q03828	EVX2	Homeobox even-skipped homolog protein 2	121	1.87E-030	No
FUSION_DUP_367	cl_4	0.8010905	Q9VG81, P08155	Sccpdh2, Kr-h1	Sacchrp_dh_NADP domain-containing protein, Krueppel homolog 1	27.7, 250	0.59, 3.23e-39	No, No	Q8WUD1, P52747	RAB2B, ZNF143	Ras-related protein Rab-2B, Zinc finger protein 143	27.7, 331.4	0.75, 2.51e-72	No, Yes
mikado.phaw_50.283823aG1002	cl_4	0.9966983	P20482	cnc	Segmentation protein capncollar	282.1	1.30E-070	Yes	Q14494	NFE2L1	Endoplasmic reticulum membrane sensor NFE2L1	197	4.92E-055	Yes
MSTRG.33483	cl_4	0.9766917	A1Z8K2	Dmel\CG13204	FI20150p1	57.8	2.48E-009	Yes	P01133	EGF	Pro-epidermal growth factor	34.3	0.13	No
MSTRG.37192	cl_4	0.8927021	A0A0B4LH09	maf-S	BZIP domain-containing protein	153	2.28E-049	Yes	O15525	MAFG	Transcription factor MafG	125	3.99E-038	Yes
MSTRG.4207	cl_4	0.8032445	P13055	Eip75B	Ecdysone-induced protein 75B, isoform B	372.7	1.19E-097	Yes	Q03181	PPARD	Peroxisome proliferator-activated receptor delta	196	2.33E-054	Yes
MSTRG.44298	cl_4	0.8339209	Q27368	E2f1	Transcription factor E2f1	157	1.24E-028	Yes	O00716	E2F3	Transcription factor E2F3	174	1.47E-035	No
MSTRG.4957	cl_4	0.9106249	P07247	Kr	Protein krueppel	192	1.21E-055	Yes	A6NK53	ZNF233	Zinc finger protein 233	873.3	2.23E-033	No
MSTRG.5935	cl_4	0.9959911	Q9W539	Hr4	Hormone receptor 4	314.2	4.43E-051	Yes	Q15406	NR6A1	Nuclear receptor subfamily 6 group A member 1	168.5	1.56E-033	Yes
mikado.phaw_50.283828bG1334	cl_4	0.8626372	P40798, P40798	stc, stc	Protein shuttle craft, Protein shuttle craft	554, 554	1.67e-176, 1.67e-176	Yes, Yes	Q12986, Q12986	NFX1, NFX1	Transcriptional repressor NF-X1, Transcriptional repressor NF-X1	599, 599	0, 0	Yes, Yes
MSTRG.29045	cl_5	0.9594464	M9PF47	FoxK	Forkhead box K, isoform N	118	2.47E-027	No	Q92949	FOXJ1	Forkhead box protein J1	159	3.99E-042	Yes
MSTRG.1202	cl_6	0.8890225	Q9VDF1	dmrt93B	DM domain-containing protein	79.4	2.25E-006	No	Q9NQL9	DMRT3	Doublesex- and mab-3-related transcription factor 3	89.4	1.57E-009	No
MSTRG.25480	cl_6	0.996031	P13097	E(spl)m7-HLH	Enhancer of split m7 protein	64.7	4.06E-012	No	Q9HCC6	HES4	Transcription factor HES-4	107.8	1.12E-011	No
MSTRG.37668	cl_6	0.8734223	Q867Z4	lola	Longitudinals lacking protein, isoforms F/I/K/T	169.2	3.17E-027	No	Q9H2S9	IKZF4	Zinc finger protein Eos	182.2	2.06E-016	No
MSTRG.43653	cl_6	0.9048158	P11536	Eip74EF	Ecdysone-induced protein 74EF isoform B	80.5	3.54E-016	No	Q9NZC4	EHF	ETS homologous factor	88.2	2.44E-019	No
MSTRG.43671	cl_6	0.8272333	P29774	Ets65A	DNA-binding protein D-ETS-3	122	8.52E-030	No	P19419	ELK1	ETS domain-containing protein Elk-1	147	8.62E-039	Yes
FUSION_DUP_902	cl_6	0.9874545	P11536, X2JE77	Eip74EF, chas	Ecdysone-induced protein 74EF isoform B, Chascon, isoform D	78.2, 28.5	3.2e-16, 0.8	No, No	Q9NZC4, B5MCY1	EHF, TDRD15	ETS homologous factor, Tudor domain-containing protein 15	100, 26.6	9.41e-25, 4.7	No, No
FUSION_DUP_778	cl_6	0.9955596	P08970, Q95078, Q95078, Q95078	su(Hw), Cyp18a1, Cyp18a1, Cyp18a1	Protein suppressor of hairy wing, Cytochrome P450 18a1, Cytochrome P450 18a1, Cytochrome P450 18a1	26.9, 106, 89.4, 130	0.66, 1.59e-27, 1.41e-20, 5.42e-36	No, No, No, No	Q96DY7, P51589, P51589, P24903	MTBP, CYP2J2, CYP2J2, CYP2F1	Mdm2-binding protein, Cytochrome P450 2J2, Cytochrome P450 2J2, Cytochrome P450 2F1	25.4, 134, 107, 146	3.2, 2.16e-37, 1.31e-26, 4.59e-42	No, No, No, No
MSTRG.25861	cl_6	0.9346989	P16241	vvl	POU domain protein CF1A	306	2.46E-101	Yes	P49335	POU3F4	POU domain, class 3, transcription factor 4	300	8.58E-100	Yes
MSTRG.2705	cl_6	0.9245825	A0A0B4K653	Rfx	RFX-type winged-helix domain-containing protein	504	7.07E-168	Yes	P48380	RFX3	Transcription factor RFX3	544	0	Yes
MSTRG.32993	cl_6	0.8501356	Q9VID4	Mondo	BHLH domain-containing protein	416	3.76E-064	Yes	Q9HAP2	MLXIP	MLX-interacting protein	384	3.47E-053	Yes
MSTRG.35459	cl_6	0.9525305	Q24151	Stat92E	Signal transducer and transcription activator	426	1.97E-138	Yes	P51692	STAT5B	Signal transducer and activator of transcription 5B	630	0	No
MSTRG.36692	cl_6	0.8035568	P42003	Mad	Protein mothers against dpp	681	0	Yes	Q99717	SMAD5	Mothers against decapentaplegic homolog 5	647	0	Yes
MSTRG.36728	cl_6	0.9844581	P29747	CrebA	Cyclic AMP response element-binding protein A	194	6.86E-042	Yes	Q96BA8	CREB3L1	Cyclic AMP-responsive element-binding protein 3-like protein 1	125	3.99E-030	Yes
MSTRG.39300	cl_6	0.9788676	Q9VC61	REPTOR	Protein CREBRF homolog	261	6.96E-075	Yes	Q8IUR6	CREBRF	CREB3 regulatory factor	149	2.01E-037	Yes
MSTRG.39367	cl_6	0.9992122	Q9VL14	REPTOR-BP	REPTOR-binding partner	103	7.95E-030	Yes	O60519	CREBL2	cAMP-responsive element-binding protein-like 2	101	1.26E-028	Yes
MSTRG.45073	cl_6	0.9632649	A0A0B4KGM5	Dmel\CG9727	RFX-type winged-helix domain-containing protein	176	1.56E-044	Yes	Q2KHR2	RFX7	DNA-binding protein RFX7	117	4.71E-026	Yes
MSTRG.45479	cl_6	0.992749	P10084	sc	Achaete-scute complex protein T4	82.8	8.92E-018	Yes	P50553	ASCL1	Achaete-scute homolog 1	71.6	2.86E-014	No
MSTRG.70	cl_6	0.9226692	P15330	dl	Embryonic polarity protein dorsal	288	2.34E-086	Yes	Q04864	REL	Proto-oncogene c-Rel	172	3.13E-046	Yes
mikado.phaw_50.283828aG962	cl_7	0.9296436	O77459	ken	Transcription factor Ken	59.3	7.36E-011	No	Q8NAP8	ZBTB8B	Zinc finger and BTB domain-containing protein 8B	66.6	3.28E-013	Yes
mikado.phaw_50.283869dG448	cl_7	0.948684	P11536	Eip74EF	Ecdysone-induced protein 74EF isoform B	102	3.84E-022	No	Q9NZC4	EHF	ETS homologous factor	141	5.92E-037	Yes
MSTRG.31120	cl_7	0.9848718	P29776	Ets21C	DNA-binding protein D-ETS-6	158	5.62E-043	No	P11308	ERG	Transcriptional regulator ERG	185.1	1.04E-040	No
MSTRG.3449	cl_7	0.8051597	P23803	odd	Protein odd-skipped	179	2.00E-052	No	Q8N2R0	OSR2	Protein odd-skipped-related 2	214	1.14E-046	No
MSTRG.34794	cl_7	0.9791198	Q24142	Hr78	Nuclear hormone receptor HR78	134	3.06E-035	No	P49116	NR2C2	Nuclear receptor subfamily 2 group C member 2	254	1.49E-079	Yes
MSTRG.40372	cl_7	0.8842576	Q5U110	Dad	Mothers against decapentaplegic homolog	83.6	1.02E-019	No	O15105	SMAD7	Mothers against decapentaplegic homolog 7	82.8	1.93E-019	No
MSTRG.4056	cl_7	0.8492436	P42124	E(z)	Histone-lysine N-methyltransferase E(z)	148	5.23E-042	No	Q15910	EZH2	Histone-lysine N-methyltransferase EZH2	155	1.57E-044	No
MSTRG.531	cl_7	0.8818551	Q7KRI2	lolal	Longitudinals lacking protein-like	119	6.40E-032	No	Q8IY47	KBTBD2	Kelch repeat and BTB domain-containing protein 2	72	4.02E-013	No
FUSION_DUP_1452	cl_7	0.9354572	Q9VID3, Q9VRC3	crc, anon-WO0140519.251	BZIP domain-containing protein, FI09604p	40.8, 27.7	0.000606, 2	No, No	P49716, Q92729	CEBPD, PTPRU	CCAAT/enhancer-binding protein delta, Receptor-type tyrosine-protein phosphatase U	40.4, 26.6	1, 8.4	No, No
FUSION_DUP_1632	cl_7	0.8492908	P29617, P29617	pros, pros	Homeobox protein prospero, Homeobox protein prospero	151, 256	3.68e-20, 3.85e-80	No, Yes	Q9UI36, Q92786	DACH1, PROX1	Dachshund homolog 1, Prospero homeobox protein 1	32, 191	1.6, 3.26e-58	No, Yes
mikado.phaw_50.000148bG248	cl_7	0.8991919	P49866	Hnf4	Transcription factor HNF-4 homolog	304	3.48E-091	Yes	Q14541	HNF4G	Hepatocyte nuclear factor 4-gamma	285	3.21E-087	Yes
MSTRG.34932	cl_7	0.8988966	Q9VM15	chm	Histone acetyltransferase	540	1.17E-178	Yes	O95251	KAT7	Histone acetyltransferase KAT7	457	3.44E-149	Yes
MSTRG.961	cl_7	0.824942	Q94527	Rel	Nuclear factor NF-kappa-B p110 subunit	368.5	5.05E-062	Yes	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit	333	9.86E-058	Yes
FUSION_DUP_525	cl_7	0.8687272	P51023, P51023	pnt, pnt	ETS-like protein pointed, ETS-like protein pointed	209, 124	1.57e-61, 8.46e-33	Yes, No	P14921, P14921	ETS1, ETS1	Protein C-ets-1, Protein C-ets-1	211, 116	1.1e-64, 1.72e-30	Yes, No
MSTRG.34797	cl_7	0.9513636	Q24142, Q24142	Hr78, Hr78	Nuclear hormone receptor HR78, Nuclear hormone receptor HR78	156, 156	4.77e-41, 4.77e-41	Yes, Yes	P13056, P13056	NR2C1, NR2C1	Nuclear receptor subfamily 2 group C member 1, Nuclear receptor subfamily 2 group C member 1	142, 142	3.02e-36, 3.02e-36	No, No
MSTRG.44796	cl_8	0.9999565	P34021	EcR	Ecdysone receptor	391	5.48E-125	Yes	Q13133	NR1H3	Oxysterols receptor LXR-alpha	280	2.08E-087	Yes
mikado.phaw_50.283869dG812	cl_8	0.9999365	P15370	eg	Protein embryonic gonad	177	7.21E-050	No	Q14995	NR1D2	Nuclear receptor subfamily 1 group D member 2	90.1	1.05E-018	No
mikado.phaw_50.283875aG870	cl_8	0.870409	Q07DP5	Trf2	TATA box binding protein-related factor 2, isoform E	237.7	1.51E-010	No	Q9BYE2	TMPRSS13	Transmembrane protease serine 13	38.1	8	No
MSTRG.1186	cl_8	0.95875	Q9VDF1	dmrt93B	DM domain-containing protein	197.6	5.00E-007	No	Q9Y5R5	DMRT2	Doublesex- and mab-3-related transcription factor 2	182.5	4.89E-006	No
MSTRG.2119	cl_8	0.9992253	Q24143	Hr96	Nuclear hormone receptor HR96	83.2	3.79E-016	No	P55055	NR1H2	Oxysterols receptor LXR-beta	84.3	1.17E-016	No
MSTRG.32604	cl_8	0.9716238	A0A0B4K653	Rfx	RFX-type winged-helix domain-containing protein	234.1	7.60E-013	No	P48382	RFX5	DNA-binding protein RFX5	189.1	4.53E-012	No
MSTRG.36382	cl_8	0.9999955	Q7KRI2	lolal	Longitudinals lacking protein-like	135	7.35E-039	No	Q9NVX7	KBTBD4	Kelch repeat and BTB domain-containing protein 4	63.9	5.32E-011	No
MSTRG.5015	cl_8	0.990719	M9NGP0	Mnt	BHLH domain-containing protein	59.7	8.31E-010	No	P50539	MXI1	Max-interacting protein 1	130	5.36E-036	Yes
FUSION_DUP_1298	cl_8	0.9950874	A1Z8K2, A1ZAP8	Dmel\CG13204, CG15607	FI20150p1, Uncharacterized protein, isoform C	25, 86.6	5.8, 1.39e-07	No, No	Q15846, Q96GY0	CLUL1, ZC2HC1A	Clusterin-like protein 1, Zinc finger C2HC domain-containing protein 1A	31.6, 80.1	53, 0.000115	Yes, No
MSTRG.2666	cl_8	0.944968	Q9VQI9, Q9VQI9	lilli, lilli	AF4/FMR2 family member lilli, AF4/FMR2 family member lilli	68.2, 68.2	2.11e-11, 2.11e-11	No, No	Q9UHB7, Q9UHB7	AFF4, AFF4	AF4/FMR2 family member 4, AF4/FMR2 family member 4	67, 67	5.72e-11, 5.72e-11	Yes, Yes
MSTRG.6849	cl_8	0.9995822	Q7KRI2, Q7KRI2	lolal, lolal	Longitudinals lacking protein-like, Longitudinals lacking protein-like	162, 162	3.49e-47, 3.49e-47	No, No	P52739, P52739	ZNF131, ZNF131	Zinc finger protein 131, Zinc finger protein 131	96.6, 96.6	2.12e-11, 2.12e-11	No, No
FUSION_DUP_1321	cl_8	0.8505628	M9PB30, Q9W0S9, Q9W0S9, Q9W0S9	dpy, DIP2, DIP2, DIP2	Dumpy, isoform Q, Disco-interacting protein 2, Disco-interacting protein 2, Disco-interacting protein 2	25.4, 1912.1, 1912.1, 49.7	9, 0, 0, 4.34e-06	No, Yes, Yes, No	Q9Y4R8, Q9Y2E4, Q9Y2E4, Q9P265	TELO2, DIP2C, DIP2C, DIP2B	Telomere length regulation protein TEL2 homolog, Disco-interacting protein 2 homolog C, Disco-interacting protein 2 homolog C, Disco-interacting protein 2 homolog B	28.9, 1814.7, 1814.7, 43.1	0.68, 0, 0, 0.000581	No, Yes, Yes, No
MSTRG.27795	cl_8	0.849448	P07548	Dfd	Homeotic protein deformed	206	2.46E-061	Yes	P09017	HOXC4	Homeobox protein Hox-C4	186	4.89E-057	Yes
MSTRG.2803	cl_8	0.9999943	Q02637	slbo	CCAAT/enhancer-binding protein	86.3	6.99E-019	Yes	P17676	CEBPB	CCAAT/enhancer-binding protein beta	82	1.67E-017	Yes
MSTRG.35153	cl_8	0.9765055	Q9VWW0	CrebB	Cyclic AMP response element-binding protein B	148.3	5.94E-030	Yes	P16220	CREB1	Cyclic AMP-responsive element-binding protein 1	166	1.12E-048	Yes
MSTRG.39351	cl_8	0.9872001	Q9VUR1	mrn	General transcription factor IIH subunit 4	419	9.76E-144	Yes	Q92759	GTF2H4	General transcription factor IIH subunit 4	434	1.10E-149	Yes
MSTRG.5616	cl_8	0.9150951	P20153	usp	Protein ultraspiracle	285	4.41E-091	Yes	P48443	RXRG	Retinoic acid receptor RXR-gamma	409	1.18E-139	Yes
MSTRG.5916	cl_8	0.9914322	P49869	Hr38	Probable nuclear hormone receptor HR38	541	4.84E-176	Yes	P43354	NR4A2	Nuclear receptor subfamily 4 group A member 2	464	4.83E-152	Yes
MSTRG.6147	cl_8	0.9969608	O15945	tgo	Aryl hydrocarbon receptor nuclear translocator homolog	625	0	Yes	P27540	ARNT	Aryl hydrocarbon receptor nuclear translocator	550	0	Yes
MSTRG.6857	cl_8	0.9939558	A8JUV3	NFAT	RHD domain-containing protein	284	9.55E-078	Yes	O94916	NFAT5	Nuclear factor of activated T-cells 5	259	1.81E-069	Yes
MSTRG.25213	cl_8	0.9163374	Q24523, Q24523	bun, bun	Protein bunched, class 2/F/G isoform, Protein bunched, class 2/F/G isoform	188, 188	1.15e-21, 1.15e-21	Yes, Yes	Q99576, Q99576	TSC22D3, TSC22D3	TSC22 domain family protein 3, TSC22 domain family protein 3	100, 100	8.3e-25, 8.3e-25	Yes, Yes
MSTRG.31287	cl_8	0.9960908	P33244, P33244	ftz-f1, ftz-f1	Nuclear hormone receptor FTZ-F1, Nuclear hormone receptor FTZ-F1	261, 261	7.3e-74, 7.3e-74	Yes, Yes	O00482, O00482	NR5A2, NR5A2	Nuclear receptor subfamily 5 group A member 2, Nuclear receptor subfamily 5 group A member 2	357, 357	2.53e-57, 2.53e-57	Yes, Yes
MSTRG.4072	cl_8	0.9998769	P11536, P11536	Eip74EF, Eip74EF	Ecdysone-induced protein 74EF isoform B, Ecdysone-induced protein 74EF isoform B	224, 224	1.62e-61, 1.62e-61	Yes, Yes	Q15723, Q15723	ELF2, ELF2	ETS-related transcription factor Elf-2, ETS-related transcription factor Elf-2	203, 203	8.06e-56, 8.06e-56	Yes, Yes