Supplementary Material (PDF): tables and figures.
\n\nAlignment (Nexus):\u00a0concatenated alignment with the mined nuclear loci, plastid rbcL gene and trnK-matK region, and ITS region.
\n\nSupplementary_Material_BUCKy-results (zip file): results from the BCA applied to a four-loci (Loci4 folder) and three-loci\u00a0(Loci3 folder) analysis.
\nFunding provided by: Fronteras de la Ciencia Consejo Nacional de Ciencia y Tecnolog\u00eda*
Crossref Funder Registry ID:
Award Number: 1602701-72
Funding provided by: Programa de Apoyos a Proyectos de Investigaci\u00f3n e Innovaci\u00f3n Tecnol\u00f3gica of the Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM) PAPIIT IG200316*
Crossref Funder Registry ID:
Award Number: IG200316
Funding provided by: Doctoral scholarship from Consejo Nacional de Ciencia y Tecnolog\u00eda (CONACyT)*
Crossref Funder Registry ID:
Award Number: 507682/288658
Funding provided by: Fronteras de la Ciencia Consejo Nacional de Ciencia y Tecnolog\u00eda
Crossref Funder Registry ID:
Award Number: 1602701-72
Funding provided by: Doctoral scholarship from Consejo Nacional de Ciencia y Tecnolog\u00eda (CONACyT)
Crossref Funder Registry ID:
Award Number: 507682/288658
The family Malvaceae s. l. is a clade that comprises nine subfamilies. Phylogenetic relationships among them are not completely resolved and are inconsistent among studies, probably due to low phylogenetic informativeness of conventional molecular markers. In the present study, we provide new phylogenetic information for Malvaceae s.l. derived from newly-designed group-specific nuclear markers. By mining transcriptome data from the One Thousand Plant Project (1KP) and publicly available genome information from cotton, cacao, and Arabidopsis, we designed a set of molecular markers of potentially single-or low-copy nuclear genes for Malvaceae s.l. Phylogenetic potential of these new loci was compared to previously applied conventional markers (i.e., plastid trnK-matK region and rbcL gene and the nrDNA\u00a0ITS region) using the phylogenetic informativeness method. The results show that, when the mined nuclear regions are used in combination, it is possible to resolve relationships at different taxonomic levels within the phylogeny. However, incongruence among nuclear loci is frequent in the group, explaining the prevalence of unresolved phylogenetic relationships.
", "publication_date": "2022-03-31", "publisher": "Zenodo", "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Malvaceae" }, { "subject": "low-copy nuclear loci" }, { "subject": "transcriptome mining" }, { "subject": "alignment" } ], "title": "Data from: Low-copy nuclear genes reveal new evidence of incongruence in relationships within Malvaceae s.l." }, "parent": { "access": { "owned_by": { "user": "90070" } }, "communities": { "default": "734b6452-1f40-4db0-b218-08ab1d568b7f", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": false }, "created": "2020-02-04T14:03:17.992421+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "734b6452-1f40-4db0-b218-08ab1d568b7f", "links": {}, "metadata": { "curation_policy": "The Dryad collection in Zenodo contains datasets mirrored from the Dryad Digital Repository. If you want your dataset to appear here, submit it through https://datadryad.org. No other datasets will be accepted.
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