weecology/portalcasting-v0.29.0.zip
weecology-portalcasting-d864b35
.Rbuildignore
251 Bytes
.github
.gitignore
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workflows
check-release.yaml
1.3 kB
docker-publish.yml
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pkgdown.yaml
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test-coverage.yaml
1.9 kB
.gitignore
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.zenodo.json
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CODE_OF_CONDUCT.md
3.2 kB
CONTRIBUTING.md
4.9 kB
DESCRIPTION
1.8 kB
LICENSE
38 Bytes
LICENSE.md
1.1 kB
NAMESPACE
4.5 kB
NEWS.md
42.3 kB
R
args.R
25.5 kB
cast_covariates.R
10.1 kB
create_dir.R
2.0 kB
data_input_output.R
14.6 kB
download.R
11.2 kB
ensembling.R
7.8 kB
evaluate.R
850 Bytes
figures.R
40.1 kB
fill_dir.R
16.2 kB
models_EDM.R
10.9 kB
models_jags.R
25.5 kB
paths.R
9.0 kB
portalcast.R
14.4 kB
portalcasting.R
1.6 kB
prefab_models.R
27.3 kB
prepare_covariates.R
12.3 kB
prepare_metadata.R
9.0 kB
prepare_models.R
31.4 kB
prepare_moons.R
13.2 kB
prepare_rodents.R
46.7 kB
process_casts.R
25.0 kB
scoring_rules.R
0 Bytes
setup_dir.R
11.6 kB
utilities.R
20.5 kB
README.md
7.0 kB
_pkgdown.yml
5.9 kB
code_development
data_sim.R
2.7 kB
data_sim_attentuation_model.R
2.7 kB
logistic_dm.R
2.1 kB
model_dev.R
11.6 kB
notes.R
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working.R
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codecov.yml
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docker
Dockerfile
366 Bytes
README.md
535 Bytes
inst
WORDLIST
1.1 kB
extdata
covariate_forecasts.csv
66.2 kB
precip_forecasts.csv
24.3 kB
prepping_covariate_fcasts.R
4.1 kB
tmean_forecasts.csv
24.3 kB
man
NMME_urls.Rd
2.2 kB
add_date_from_components.Rd
1.2 kB
add_moons_from_date.Rd
1.1 kB
add_to_cast_tab.Rd
2.2 kB
alternative_values.Rd
846 Bytes
append_csv.Rd
1.2 kB
argument_checking.Rd
9.5 kB
cast_covariates.Rd
3.2 kB
cast_window.Rd
1.8 kB
clear_tmp.Rd
1.3 kB
combine_hist_and_cast.Rd
1.7 kB
covariate_models.Rd
805 Bytes
directory_config.Rd
2.3 kB
directory_creation.Rd
1.3 kB
download_archive.Rd
1.4 kB
download_climate_forecasts.Rd
1.2 kB
ensemble_casts.Rd
3.0 kB
error_if_deep.Rd
785 Bytes
figures
portalcasting.png
61.9 kB
file_ext.Rd
1.7 kB
files_control.Rd
2.7 kB
fill_directory.Rd
6.4 kB
foy.Rd
1.1 kB
jags_ss.Rd
6.8 kB
lag_covariates.Rd
1.4 kB
last_census.Rd
1.0 kB
list_depth.Rd
623 Bytes
match.call.defaults.Rd
1.2 kB
measure_cast_level_error.Rd
1.3 kB
message_break.Rd
583 Bytes
messageq.Rd
1.0 kB
model_control.Rd
1.4 kB
model_controls.Rd
5.2 kB
models_to_cast.Rd
1.3 kB
most_abundant_species.Rd
1.2 kB
na_conformer.Rd
1.5 kB
named_null_list.Rd
554 Bytes
paths.Rd
2.3 kB
plot_cast_point.Rd
4.0 kB
plot_cast_ts.Rd
3.7 kB
plot_casts_cov_RMSE.Rd
2.9 kB
plot_casts_err_lead.Rd
3.0 kB
portalcast.Rd
7.3 kB
portalcasting.Rd
760 Bytes
prefab_data_sets.Rd
989 Bytes
prefab_model_functions.Rd
6.3 kB
prefab_models.Rd
672 Bytes
prep_covariates.Rd
2.5 kB
prep_metadata.Rd
4.4 kB
prep_rodents.Rd
2.6 kB
prepare_historical_covariates.Rd
1.9 kB
prepare_moons.Rd
3.7 kB
prepare_rodents_table.Rd
6.8 kB
read_cast_output.Rd
2.3 kB
read_casts_metadata.Rd
934 Bytes
read_data.Rd
3.5 kB
remove_incompletes.Rd
1.0 kB
return_if_null.Rd
867 Bytes
rodent_species.Rd
2.2 kB
rodents_control.Rd
5.4 kB
rodents_controls.Rd
6.9 kB
runjags_control.Rd
3.3 kB
save_cast_output.Rd
2.8 kB
select_casts.Rd
2.4 kB
setup_dir.Rd
6.4 kB
species_in_tables.Rd
1.7 kB
summarize_daily_weather_by_moon.Rd
1.1 kB
target_moons.Rd
2.1 kB
trim_moons.Rd
1.8 kB
update_list.Rd
585 Bytes
update_models.Rd
3.7 kB
verify_models.Rd
1.0 kB
write_data.Rd
1.2 kB
write_model.Rd
3.8 kB
paper
paper.bib
8.3 kB
paper.md
5.4 kB
portalcasting.Rproj
303 Bytes
tests
testthat
test-01-args.R
2.8 kB
test-02-utilities.R
5.3 kB
test-03-paths.R
1.2 kB
test-04-messaging.R
335 Bytes
test-05-create_dir.R
489 Bytes
test-06-download.R
216 Bytes
test-07-fill_dir.R
1.1 kB
test-08-cast_covariates.R
1.4 kB
test-09-data_input_output.R
2.6 kB
test-10-prepare_covariates.R
1.2 kB
test-11-prepare_metadata.R
458 Bytes
test-12-prepare_moons.R
2.0 kB
test-13-prepare_rodents.R
3.2 kB
test-14-prepare_models.R
3.3 kB
test-15-setup_dir.R
281 Bytes
test-16-prefab_models.R
8.0 kB
test-17-figures.R
2.3 kB
test-18-portalcast.R
221 Bytes
test-19-processing_casts.R
2.4 kB
test-20-ensembling.R
515 Bytes
test-21-jags.R
117 Bytes
test-99-outro.R
307 Bytes
testthat.R
68 Bytes
vignettes
adding_model_and_data.Rmd
19.2 kB
codebase.Rmd
9.8 kB
current_models.Rmd
14.5 kB
getting_started.Rmd
8.3 kB
imgs
getting_started_fig1.jpg
32.1 kB
getting_started_fig2.jpg
26.5 kB
getting_started_fig3.jpg
32.1 kB
getting_started_fig4.jpg
27.9 kB
sandbox_1_AutoArima.jpg
50.9 kB
sandbox_1_add_to_args.jpg
181.6 kB
sandbox_1_casts.jpg
63.6 kB
sandbox_1_casts_added.jpg
27.6 kB
sandbox_1_data.jpg
37.6 kB
sandbox_1_data_added.jpg
28.7 kB
sandbox_1_main.jpg
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sandbox_1_models.jpg
26.7 kB
sandbox_1_models_added.jpg
30.8 kB
sandbox_1_newdata_to_prefab.jpg
203.6 kB
sandbox_1_newmod.jpg
151.7 kB
sandbox_1_newmod_cast_point.jpg
59.4 kB
sandbox_1_newmod_cast_ts.jpg
175.9 kB
sandbox_1_newmod_function.jpg
151.2 kB
sandbox_1_newmod_test.jpg
183.4 kB
sandbox_1_newmod_to_prefab.jpg
207.1 kB
jags_models.Rmd
16.2 kB
refs.bibtex
6.6 kB