{% extends "layout.html" %} {% block title %} Filter search {% endblock title %} {% block body %}

Filter ASVs and Bioatlas records

Find Amplicon Sequence Variants (ASVs) and associated Bioatlas occurrence records using filter search. Selected filters are combined with logical AND, and limit available options in remaining dropdowns.


{{ sform.csrf_token }}

Sequencing details

{{ sform.gene(id='gene', class='form-control select2') }}
{{ sform.sub(id='sub', class='form-control select2') }}

{{ sform.fw_prim(id='fw_prim', class='form-control select2') }}
{{ sform.rv_prim(id='rv_prim', class='form-control select2') }}


Taxonomy

{{ sform.kingdom(id='kingdom', class='form-control select2') }}
{{ sform.phylum(id='phylum', class='form-control select2') }}
{{ sform.classs(id='classs', class='form-control select2') }}
{{ sform.oorder(id='oorder', class='form-control select2') }}

{{ sform.family(id='family', class='form-control select2') }}
{{ sform.genus(id='genus', class='form-control select2') }}
{{ sform.species(id='species', class='form-control select2') }}

Read more about ASV taxonomy in SBDI here.


{{ sform.filter_asvs(class='btn btn-primary', id='filter_asvs') }}   

Tip: You may have to scroll down and wait for results to load. Then tick a checkbox to (de)select a row, toggle +/- symbols to show/hide sequences, and click bottom Show Bioatlas records button to show occurrences of selected ASV:s in the Bioatlas. You can also download search results as Excel/CSV, and use taxonID column to link these to Bioatlas records.

{% if rform %}
{{ rform.csrf_token }}

taxonID (Bioatlas link) ASV Gene Fragment Fw primer Rv primer ASV sequence Forward primer sequence Reverse primer sequence
{% include "sbdi_post.html" %}
{% endif %} {% endblock body %}