Heatmap of all events after binmat - using binary distance

ggheatmap(hmat, ...)

Arguments

hmat

dataframe obtained after binamt

...

Further arguments as passed to ComplexHeatmap::Heatmap

Value

heatmap of binmat events

Examples

set.seed(123) patients <- as.character(unique(mut$Tumor_Sample_Barcode))[1:200] gen.dat <- binmat(patients=patients, maf=mut, cna=cna, fusion=fusion, set.plat=TRUE)
#> Warning: MUTATION DATA: To ensure gene with multiple names/aliases are correctly grouped together, the #> following genes in your maf dataframe have been recoded. You can supress this with recode.aliases = FALSE #> #> AMER1 recoded to FAM123B
#> Warning: CNA DATA: To ensure gene with multiple names/aliases are correctly grouped together, the #> following genes in your CNA data have been recoded. You can supress this with recode.aliases = FALSE. #> #> AMER1 recoded to FAM123B
#> Warning: All samples were sequenced on the same platform. #> The specify.plat argument has been overwritten to FALSE.
ggheatmap(gen.dat, show_row_names=FALSE, show_column_names=FALSE)