oncoKB.annotate OncoKB annotator for MAF files.

oncoKB.annotate(input, output, lib.path = NULL)

Arguments

input

A MAF file to be annotated.

output

Name of the output file

lib.path

Path to the gnomeR library

Value

OncoKb annotate MAF.

Examples

# Needs to be run on LINUX with python # oncoKB.annotate(input = "ExampleMaf", out = "ExampleOut")