Heatmap of all events after binmat - using binary distance
ggheatmap(hmat, ...)
hmat | dataframe obtained after binamt |
---|---|
... | Further arguments as passed to ComplexHeatmap::Heatmap |
heatmap of binmat events
set.seed(123) patients <- as.character(unique(mut$Tumor_Sample_Barcode))[1:200] gen.dat <- binmat(patients=patients, maf=mut, cna=cna, fusion=fusion, set.plat=TRUE)#> Warning: MUTATION DATA: To ensure gene with multiple names/aliases are correctly grouped together, the #> following genes in your maf dataframe have been recoded. You can supress this with recode.aliases = FALSE #> #> AMER1 recoded to FAM123B#> Warning: CNA DATA: To ensure gene with multiple names/aliases are correctly grouped together, the #> following genes in your CNA data have been recoded. You can supress this with recode.aliases = FALSE. #> #> AMER1 recoded to FAM123B#> Warning: All samples were sequenced on the same platform. #> The specify.plat argument has been overwritten to FALSE.ggheatmap(gen.dat, show_row_names=FALSE, show_column_names=FALSE)