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Published March 18, 2022 | Version 2.0.1
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FofanovLab/mtsv_tools: v2.0.1

  • 1. Northern Arizona University School of Informatics, Computing, and Cyber Systems


Second Major Version:

  1. Updated Rust-Bio data structures.
    • This includes a sampled suffix array which reduces the size of the MG-Indices.
    • Indices built with different major versions will not be compatible.
  2. New output format.
    • The binning output now reports the alignment edit distance for hits.
    • The collapse command works with this new output and will not be compatible with previous output format
  3. New inputs allowed.
    • The binning command now accepts either FASTA or FASTQ format inputs.
    • The queries no longer need to be the same size.
  4. Parameter changes
    • To account for different size queries, the binning parameters have been modified.
    • The edit distance is now a proportion (--edit-rate) based on the length of the read.
    • The --seed-gap parameter was renamed --seed-interval to be more consistent with other tools.
    • The minimum seed threshold (--min-seed) is now a percentage of the number of seeds to allow different size reads.

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