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Citing IMGT/GENE-DB: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191 pdf

IMGT/GENE-DB program version: 3.1.33 (22 March 2021)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Nucleotide sequences for F+ORF+all P alleles


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 19
>J00256|IGHJ1*01|Homo sapiens|F|J-REGION|723..774|52 nt|1| | | | |52+0=52| | |
gctgaatacttccagcactggggccagggcaccctggtcaccgtctcctcag
>J00256|IGHJ1P*01|Homo sapiens|P|J-REGION|504..557|54 nt|1| | | | |54+0=54| | |
aaaggtgctgggggtcccctgaacccgacccgccctgagaccgcagccacatca
>IMGT000035|IGHJ1P*02|Homo sapiens|P|J-REGION|1014168..1014221|54 nt|1| | | | |54+0=54| | |
aaaggtgctgggggcccctggacccgacccgccctggagaccgcagccacatca
>J00256|IGHJ2*01|Homo sapiens|F|J-REGION|932..984|53 nt|2| | | | |53+0=53| | |
ctactggtacttcgatctctggggccgtggcaccctggtcactgtctcctcag
>J00256|IGHJ2P*01|Homo sapiens|P|J-REGION|1320..1380|61 nt|1| | | | |61+0=61| | |
gctacaagtgcttggagcactggggcagggcagcccggacaccgtctccctgggaacgtc
a
>IMGT000035|IGHJ2P*02|Homo sapiens|P|J-REGION|1014993..1015054|62 nt|3| | | | |62+0=62| | |
gctacaagtgcttggagcactggggccagggcagcccggccaccgtctccctgggaacgt
ca
>J00256|IGHJ3*01|Homo sapiens|F|J-REGION|1537..1586|50 nt|2| | | | |50+0=50| | |
tgatgcttttgatgtctggggccaagggacaatggtcaccgtctcttcag
>X86355|IGHJ3*02|Homo sapiens|F|J-REGION|1107..1156|50 nt|2| | | | |50+0=50| | |
tgatgcttttgatatctggggccaagggacaatggtcaccgtctcttcag
>J00256|IGHJ3P*01|Homo sapiens|P|J-REGION|2746..2797|52 nt|1| | | | |52+0=52| | |
cttgcggttggacttcccagccgacagtggtggtctggcttctgaggggtca
>X86355|IGHJ3P*02|Homo sapiens|P|J-REGION|2277..2326|50 nt|1| | | | |50+0=50| | |
cttgcagttggacttcccaggccgacagtggtctggcttctgaggggtca
>J00256|IGHJ4*01|Homo sapiens|F|J-REGION|1912..1959|48 nt|3| | | | |48+0=48| | |
actactttgactactggggccaaggaaccctggtcaccgtctcctcag
>X86355|IGHJ4*02|Homo sapiens|F|J-REGION|1480..1527|48 nt|3| | | | |48+0=48| | |
actactttgactactggggccagggaaccctggtcaccgtctcctcag
>M25625|IGHJ4*03|Homo sapiens|F|J-REGION|446..493|48 nt|3| | | | |48+0=48| | |
gctactttgactactggggccaagggaccctggtcaccgtctcctcag
>J00256|IGHJ5*01|Homo sapiens|F|J-REGION|2354..2404|51 nt|3| | | | |51+0=51| | |
acaactggttcgactcctggggccaaggaaccctggtcaccgtctcctcag
>X86355|IGHJ5*02|Homo sapiens|F|J-REGION|1878..1928|51 nt|3| | | | |51+0=51| | |
acaactggttcgacccctggggccagggaaccctggtcaccgtctcctcag
>J00256|IGHJ6*01|Homo sapiens|F|J-REGION|2947..3009|63 nt|3| | | | |63+0=63| | |
attactactactactacggtatggacgtctgggggcaagggaccacggtcaccgtctcct
cag
>X86355|IGHJ6*02|Homo sapiens|F|J-REGION|2482..2543|62 nt|3| | | | |62+0=62|partial in 3'| |
attactactactactacggtatggacgtctggggccaagggaccacggtcaccgtctcct
ca
>X86356|IGHJ6*03|Homo sapiens|F|J-REGION|2482..2543|62 nt|3| | | | |62+0=62|partial in 3'| |
attactactactactactacatggacgtctggggcaaagggaccacggtcaccgtctcct
ca
>AJ879487|IGHJ6*04|Homo sapiens|F|J-REGION|39..101|63 nt|3| | | | |63+0=63| | |
attactactactactacggtatggacgtctggggcaaagggaccacggtcaccgtctcct
cag


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