This Recent_speciation_and_hybridization_in_Icelandic_deep-sea_isopods:_An_integrative_ approach_using_genomics_and_proteomicsreadme.txt file was generated on 2021-12-31 by Saskia Brix

GENERAL INFORMATION

1. Title of Dataset: Recent speciation and hybridization in Icelandic deep-sea isopods: An integrative approach using genomics and proteomics

2. Author Information
	A. Principal Investigator Contact Information
		Name: Saskia Brix
		Institution: Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB)
		Address: c/o Biocenter Grindel, Center of Natural History (CeNak), Universität Hamburg, Hamburg, Germany
		Email: saskia.brix-elsig@senckenberg.de

	B. Associate or Co-investigator Contact Information
		Name: Martin Schwentner
		Institution: Naturhistorisches Museum Wien, Vienna, Austria
		Email: martin.schwentner@nhm-wien.ac.at

	C. Alternate Contact Information
		Name: Eva Paulus
		Institution: University of Groningen
		Email: eva.paulus@outlook.com
	
	D. Alternate Contact Information
		Name: Sven Rossel
		Institution:Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB)
		Email: sven.rossel@senckenberg.de

	E. Alternate Contact Information
		Name: Janna Peters
		Institution: Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB)
		Email: janna.peters@senckenberg.de

	F. Alternate Contact Information
		Name: Pedro M. Martinez
		Institution: Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB)
		Email: pmartinez@senckenberg.de

3. Date of data collection: All H. bicuspis specimens examined were sampled aboard the re-search vessels  RV  Meteor  (M85/3),  RV  Poseidon  (POS456)  and RV Maria S. Merian (MSM75) during the IceAGE (2011), IceAGE2 (2013)  and  IceAGE_RR  (2018)  expeditions.  The  specimens  were sorted at the laboratories of the DZMB (German Centre for Marine Biodiversity Research) and deposited in the collections of the Centre of Natural History in Hamburg

4. Geographic location of data collection: North Atlantic Ocean, Reykjanes Ridge, Irminger Basin, Icelandic shelf, Norwegian Sea, Denmark Strait (all stations are located around Iceland and in adjacent waters between 60° and 70°N and 4°E and 28°W.

5. Information about funding sources that supported the collection of the data: Funding was provided through BR3843/4-1, 5-1 and MerMet 17-06 awarded to SB from the DFG. This work was also supported  by  the  DFG  initiative  1991  “Taxon-omics”  (grant  no. RE2808/3-1 and RE2808/3-2).


SHARING/ACCESS INFORMATION

1. Licenses/restrictions placed on the data: No

2. Links to publications that cite or use the data: https://doi.org/10.1111/mec.16234 and https://doi.org/10.3389/fmars.2021.795196

3. Links to other publicly accessible locations of the data: None

4. Links/relationships to ancillary data sets: All DNA sequences were submitted to Genbank (COI: MW472427-MW472639; ddRAD in SRA: SAMN16492264-SAMN16492315; the BoLD data set can be found at doi dx.doi.org/10.5883/DS-HAPLB and contains all the information about sampling loca-tions and COI data as well as morphological identifications.

5. Was data derived from another source? no

6. Recommended citation for this dataset: Brix, S., Schwentner, M., Paulus, E., Rossel, S., Peters, J., Martinez, P.M. (2022). Recent speciation and hybridization in Icelandic deep-sea isopods: An integrative approach using genomics and proteomics.


DATA & FILE OVERVIEW

1. Fils: The dataset contains a Hellinger_Matrix as excecsv file (Hellinger_Matrix.csv), the MetaData excel file (MetaDataxlsx.xlsx), alls specimen_codes as txt for ddRAD (specimen_codes_ipyrad_ddRAD.txt)
and following files: I-III.ustr, I-III.usnps, Test20.loci, I-III.ugeno, I-III.snpsmap, I-III.snps, I-III.vcf, I-III.snps.hdf5, I-III.str, I-III.geno, I-III.seqs.hdf5, I-III.phy, I-III.nex, I-III.gphocs, I-III.alleles, I-V.geno, I-V.alleles, I-V.gphocs, I-V.hdf5, I-V.snps,  
I-V.loci, I-V.snps.hdf5, I-V.snpsmap, I-V.ugeno, I-V.nex, I-V.usnps, I-V.ustr, I-V.phy, I-V.str, I-V.vcf

2. Additional related data collected that was not included in the current data package: 

3. Are there multiple versions of the dataset? no