Preview

susbo-5prime_stop_paper-9d825bc
- 00_download
  - 01_download_annotation.pl
    
    1.1 kB
  - 02_download_libraries.pl
    
    1.1 kB
  - libraries.txt
    
    36.1 kB
  - urls.txt
    
    9.2 kB
- 01_correct_piCdb_mistakes
  - 01_download_reference_genomes.sh
    
    2.6 kB
  - 02_convert_gz_bgz.sh
    
    336 Bytes
  - 03_create_index.sh
    
    287 Bytes
  - 04_extract_fasta.sh
    
    682 Bytes
- 02_create_reference
  - 01_create_reference.sh
    
    878 Bytes
- 03_alignment
  - 01_alignment.sh
    
    365 Bytes
  - alignment.template
    
    525 Bytes
- 04_annotate_clusters
  - 01_run_summary.sh
    
    492 Bytes
  - 02_select_clusters.pl
    
    1.3 kB
  - summary_uniq.pl
    
    2.7 kB
- 05_subsample
  - 01_deduplicate100.pl
    
    2.2 kB
  - 02_compress100.sh
    
    521 Bytes
  - 03_deduplicate1.pl
    
    2.2 kB
  - 04_compress1.sh
    
    527 Bytes
  - 05_deduplicate10.pl
    
    2.2 kB
  - 06_compress10.sh
    
    530 Bytes
- 06_select_reads
  - 01_select_reads.pl
    
    1.7 kB
- 07_analyze_clusters
  - 01_analyze.pl
    
    1.4 kB
  - 02_count_codons.pl
    
    1.1 kB
- README.md
  
  5.1 kB