This file briefly describes the data files included in the home range size and fidelity sleepy lizard dataset. Brief background: From 2009 through 2017, we attached GPS units to ~50-70 lizards in an ~1.2 km2 study site near Bundey, South Australia (-33.888245, 139.310673). Throughout the lizards' activity season (the Australian Spring), the GPS units took regular reads on lizards' daily locations. Using these GPS data, as well as morphological, behavioral, and habitat data, we explored predictors of lizard home range (HR) size and fidelity through time. We also evaluated whether individuals exhibited consistent HR size and fidelities (i.e., repeatability, or personality).
The nine datasets in the main folder share many columns in common. We could have presented them as two datasets (HR size and fidelity), but to follow the organization of the different analyses we conducted in the manuscript, we split them into nine.
The randomizations folder contains six datasets, all provided in the ".rds" format, which is native to the open source program 'R.' To read these files into R, use the function readRDS().
In this section, we provide descriptions of the columns within each dataset, all of which are tables. Columns whose name includes the moniker "_z" are standardized, which is also noted in the column description. "Standardized" means we removed the mean and divided by the standard deviation in order to scale a variable and make it unitless.
Table: HRsize50+95_Repeatability.csv
| cols | description |
|---|---|
| year | year of field study |
| lizard | lizard identification number |
| hrsize50 | 50% HR size in hectares |
| hrsize50_z | standardized 50% HR size |
| hrsize95 | 95% HR size in hectares |
| hrsize95_z | standardized 95% HR size |
| raindays_z | standardized number of rainy days for calendar year |
| Sex | Sex: 0 is female; 1 is male |
| degree_z | standardized social network degree |
| PHR95_overlap_z | standardized seasonal average probability of HR overlap (PHR) with other lizards |
Table: Fidelity50+95_Repeatability.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| yryr | character showing the two years of the fidelity analysis |
| udoi50overlap | HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| udoi50overlap_z | standardized HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| udoi95overlap | HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| udoi95overlap_z | standardized HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| yeardif | number of years separating the HRs in the HR fidelity evaluation |
| yr_raindaysdif_z | standardized difference between the number of rainy days in the two years of the fidelity analysis |
| avgmass_yr12_z | standardized seasonal average of lizard mass, averaged over the two fidelity years |
| yr_massdif_z | standardized difference between average mass values of the two years in the fidelity analysis |
| avgjuvtick_yr12_z | standardized seasonal average of larval + nymph tick count, averaged over the two fidelity years |
| avgkde95_yr12_z | standardized 95% home range size based on kernel density estimation, averaged over the two fidelity years |
| PHR95_year1_z | standardized seasonal average probability of HR overlap with other lizards within the earlier fidelity year |
| avgdeg_yr12_z | standardized social network degree, averaged over the two fidelity years |
Table: HRsize50+95_NoHabitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| year | year of field study |
| hrsize50 | 50% HR size in hectares |
| hrsize50_z | standardized 50% HR size |
| hrsize95 | 95% HR size in hectares |
| hrsize95_z | standardized 95% HR size |
| rainfall_z | standardized rainfall amount for calendar year |
| raindays_z | standardized number of rainy days for calendar year |
| aggression_z | standardized aggression score |
| mass_z | standardized seasonal average mass for lizard |
| Sex | Sex: 0 is female; 1 is male |
| degree_z | standardized social network degree |
| PHR95_overlap_z | standardized seasonal average probability of HR overlap (PHR) with other lizards |
| juvticks_z | standardized seasonal average larval + nymph tick count for lizard |
Table: HRsize50_Habitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| year | year of field study |
| hrsize50 | 50% HR size in hectares |
| hrsize50_z | standardized 50% HR size |
| raindays_z | standardized number of rainy days for calendar year |
| aggression_z | standardized aggression score |
| mass_z | standardized seasonal average mass for lizard |
| Sex | Sex: 0 is female; 1 is male |
| degree_z | standardized social network degree |
| PHR95_overlap_z | standardized seasonal average probability of HR overlap (PHR) with other lizards |
| juvticks_z | standardized seasonal average larval + nymph tick count for lizard |
| HR50_moistfoodrank_avg_z | standardized average food rank score within the 50% HR |
| HR50_refugerank_avg_z | standardized average refuge rank score within the 50% HR |
Table: HRsize95_Habitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| year | year of field study |
| hrsize95 | 95% HR size in hectares |
| hrsize95_z | standardized 95% HR size |
| raindays_z | standardized number of rainy days for calendar year |
| aggression_z | standardized aggression score |
| mass_z | standardized seasonal average mass for lizard |
| Sex | Sex: 0 is female; 1 is male |
| degree_z | standardized social network degree |
| PHR95_overlap_z | standardized seasonal average probability of HR overlap (PHR) with other lizards |
| juvticks_z | standardized seasonal average larval + nymph tick count for lizard |
| HR95_moistfoodrank_avg_z | standardized average food rank score within the 95% HR |
| HR95_refugerank_avg_z | standardized average refuge rank score within the 95% HR |
Table: BinomialInsite.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| year | year of field study |
| insite_nextyear | binomial outcome: 0 means was NOT observed in the site in any future year |
| rainfall_z | standardized rainfall amount for calendar year |
| raindays_z | standardized number of rainy days for calendar year |
| aggression_z | standardized aggression score |
| mass_z | standardized seasonal average mass for lizard |
| Sex | Sex: 0 is female; 1 is male |
| juvticks_z | standardized seasonal average larval + nymph tick count for lizard |
| hrsize95_z | standardized 95% HR size |
| PHR95_overlap_z | standardized seasonal average probability of HR overlap (PHR) with other lizards |
| degree_z | standardized social network degree |
| centersitedist_z | standardized distance between the lizard HR centroid and the center of the site |
Table: Fidelity50+95_NoHabitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| yryr | character showing the two years of the fidelity analysis |
| udoi50overlap | HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| udoi50overlap_z | standardized HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| udoi95overlap | HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| udoi95overlap_z | standardized HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| yeardif | number of years separating the HRs in the HR fidelity evaluation |
| Sex | Sex: 0 is female; 1 is male |
| yr_rainfalldif_z | standardized difference between the rainfall amount in the two years of the fidelity analysis |
| yr_raindaysdif_z | standardized difference between the number of rainy days in the two years of the fidelity analysis |
| avg_aggression_yr12_z | standardized aggression score, averaged over the two fidelity years |
| avgmass_yr12_z | standardized seasonal average of lizard mass, averaged over the two fidelity years |
| yr_massdif_z | standardized difference between average mass values of the two years in the fidelity analysis |
| avgjuvtick_yr12_z | standardized seasonal average of larval + nymph tick count, averaged over the two fidelity years |
| avgkde50_yr12_z | standardized 50% home range size based on kernel density estimation, averaged over the two fidelity years |
| avgkde95_yr12_z | standardized 95% home range size based on kernel density estimation, averaged over the two fidelity years |
| PHR95_year1_z | standardized seasonal average probability of HR overlap with other lizards within the earlier fidelity year |
| avgdeg_yr12_z | standardized social network degree, averaged over the two fidelity years |
Table: Fidelity50_Habitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| yryr | character showing the two years of the fidelity analysis |
| udoi50overlap | HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| udoi50overlap_z | standardized HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| yeardif | number of years separating the HRs in the HR fidelity evaluation |
| avgmass_yr12_z | standardized seasonal average of lizard mass, averaged over the two fidelity years |
| yr_massdif_z | standardized difference between average mass values of the two years in the fidelity analysis |
| PHR95_year1_z | standardized seasonal average probability of HR overlap with other lizards within the earlier fidelity year |
| avgdeg_yr12_z | standardized social network degree, averaged over the two fidelity years |
| HR50_moistfoodrank_yr1_z | standardized average food rank score within the 50% HR of the earlier fidelity year |
| HR50_refugerank_yr1_z | standardized average refuge rank score within the 50% HR of the earlier fidelity year |
Table: Fidelity95_Habitat.csv
| cols | description |
|---|---|
| lizard | lizard identification number |
| yryr | character showing the two years of the fidelity analysis |
| udoi95overlap | HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| udoi95overlap_z | standardized HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| yeardif | number of years separating the HRs in the HR fidelity evaluation |
| yr_raindaysdif_z | standardized difference between the number of rainy days in the two years of the fidelity analysis |
| avgmass_yr12_z | standardized seasonal average of lizard mass, averaged over the two fidelity years |
| yr_massdif_z | standardized difference between average mass values of the two years in the fidelity analysis |
| avgjuvtick_yr12_z | standardized seasonal average of larval + nymph tick count, averaged over the two fidelity years |
| avgkde95_yr12_z | standardized 95% home range size based on kernel density estimation, averaged over the two fidelity years |
| PHR95_year1_z | standardized seasonal average probability of HR overlap with other lizards within the earlier fidelity year |
| avgdeg_yr12_z | standardized social network degree, averaged over the two fidelity years |
| HR95_moistfoodrank_yr1_z | standardized average food rank score within the 95% HR of the earlier fidelity year |
| HR95_refugerank_yr1_z | standardized average refuge rank score within the 95% HR of the earlier fidelity year |
Table: Fidelity_Randomization.rds
| cols | description |
|---|---|
| year1 | when deriving HR fidelity between two years, the earlier of the two years |
| year2 | when deriving HR fidelity between two years, the later of the two years |
| yeardif | number of years separating the HRs in the HR fidelity evaluation |
| lizard_year1 | character vector of lizard and year 1 for the fidelity randomization |
| lizard_year2 | character vector of lizard and year 2 for the fidelity randomization |
| udoi95overlap | HR fidelity evaluated at the 95% HR, using the utilization distribution overlap index |
| udoi50overlap | HR fidelity evaluated at the 50% HR, using the utilization distribution overlap index |
| randomization_index | index for the randomization indicating discrete randomized datasets. Up to 10000 for the fidelity randomization, and 1000 for the PHR/Degree randomization |
Table: PHR_Degree_Randomization.rds
| cols | description |
|---|---|
| lizard | lizard identification number |
| year | year of field study |
| x_shift | extent to which HR was shifted along the x-axis (changes to longitude), in meters, for the PHR/Degree randomization |
| y_shift | extent to which HR was shifted along the y-axis (changes to latitude), in meters, for the PHR/Degree randomization |
| PHR95_overlap_random | for the PHR/Degree randomization, the randomized seasonal average probability of HR overlap (PHR) with other lizards, not standardized |
| Degree_random | for the PHR/Degree randomization, the randomized Degree value |
| randomization_index | index for the randomization indicating discrete randomized datasets. Up to 10000 for the fidelity randomization, and 1000 for the PHR/Degree randomization |
Table: HRsize50_randomization_result.rds
| cols | description |
|---|---|
| Intercept | lme4 estimated intercept value for the PHR/Degree randomization |
| Raindays_z_effect | for the PHR/Degree randomization, the me4 estimated effect of the standardized number of rainy days for calendar year, not randomized |
| Sex_effect | for the PHR/Degree randomization, lme4 estimated effect of lizard Sex, not randomized |
| Degree_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of random degree |
| PHR95_overlap_z_rand_effect | for the PHR/Degree randomization, the lme4 estimated effect of the randomized, standardized average PHR value |
| Degree_z:PHR95_overlap_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of the interaction between random PHR and random degree |
| converged | whether the lme4 model of the PHR/Degree randomization converged |
| orig_rand_degree_cor | correlation between the original and randomized value of degree in the PHR/Degree randomization |
| orig_rand_phr_cor | correlation between the original and randomized value of PHR in the PHR/Degree randomization |
Table: HRsize50_habitat_randomization_result.rds
| cols | description |
|---|---|
| Intercept | lme4 estimated intercept value for the PHR/Degree randomization |
| Raindays_z_effect | for the PHR/Degree randomization, the me4 estimated effect of the standardized number of rainy days for calendar year, not randomized |
| Aggression_z_effect | For the PHR/degree randomization, the lme4 estimated effect of aggression, not randomized |
| Sex_effect | for the PHR/Degree randomization, lme4 estimated effect of lizard Sex, not randomized |
| HR50_moistfoodrank_avg_z_effect | for the PHR/Degree randomization, lme4 estimated effect of the standardized average food rank score within the 50% HR, not randomized |
| Degree_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of random degree |
| PHR95_overlap_z_rand_effect | for the PHR/Degree randomization, the lme4 estimated effect of the randomized, standardized average PHR value |
| Degree_z:PHR95_overlap_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of the interaction between random PHR and random degree |
| converged | whether the lme4 model of the PHR/Degree randomization converged |
| orig_rand_degree_cor | correlation between the original and randomized value of degree in the PHR/Degree randomization |
| orig_rand_phr_cor | correlation between the original and randomized value of PHR in the PHR/Degree randomization |
Table: HRsize95_randomization_result.rds
| cols | description |
|---|---|
| Intercept | lme4 estimated intercept value for the PHR/Degree randomization |
| Raindays_z_effect | for the PHR/Degree randomization, the me4 estimated effect of the standardized number of rainy days for calendar year, not randomized |
| Sex_effect | for the PHR/Degree randomization, lme4 estimated effect of lizard Sex, not randomized |
| Degree_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of random degree |
| PHR95_overlap_z_rand_effect | for the PHR/Degree randomization, the lme4 estimated effect of the randomized, standardized average PHR value |
| Degree_z:PHR95_overlap_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of the interaction between random PHR and random degree |
| converged | whether the lme4 model of the PHR/Degree randomization converged |
| orig_rand_degree_cor | correlation between the original and randomized value of degree in the PHR/Degree randomization |
| orig_rand_phr_cor | correlation between the original and randomized value of PHR in the PHR/Degree randomization |
Table: HRsize95_habitat_randomization_result.rds
| cols | description |
|---|---|
| Intercept | lme4 estimated intercept value for the PHR/Degree randomization |
| Raindays_z_effect | for the PHR/Degree randomization, the me4 estimated effect of the standardized number of rainy days for calendar year, not randomized |
| Aggression_z_effect | For the PHR/degree randomization, the lme4 estimated effect of aggression, not randomized |
| Sex_effect | for the PHR/Degree randomization, lme4 estimated effect of lizard Sex, not randomized |
| HR95_moistfoodrank_avg_z_effect | for the PHR/Degree randomization, the lme4 estimated effect of the standardized average food rank score within the 95% HR, not randomized |
| Degree_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of random degree |
| PHR95_overlap_z_rand_effect | for the PHR/Degree randomization, the lme4 estimated effect of the randomized, standardized average PHR value |
| Degree_z:PHR95_overlap_z_rand_effect | for the PHR/degree randomization, the lme4 estimated effect of the interaction between random PHR and random degree |
| converged | whether the lme4 model of the PHR/Degree randomization converged |
| orig_rand_degree_cor | correlation between the original and randomized value of degree in the PHR/Degree randomization |
| orig_rand_phr_cor | correlation between the original and randomized value of PHR in the PHR/Degree randomization |