kundajelab/tfmodisco-v0.5.16.2.zip
kundajelab-tfmodisco-c1cbf7c
.circleci
config.yml
3.1 kB
.gitignore
2.2 kB
LICENSE
1.1 kB
MANIFEST.in
197 Bytes
README.md
9.4 kB
examples
H1ESC_Nanog_gkmsvm
.gitignore
63 Bytes
JustExtractSeqletsNanog.ipynb
297.8 kB
Nanog_GkmExplain_Generate_Data.ipynb
31.8 kB
TF MoDISco Nanog - No MEME init.ipynb
3.4 MB
TF MoDISco Nanog.ipynb
3.1 MB
meme_out
metacluster0
meme.xml
828.9 kB
simulated_TAL_GATA_deeplearning
.gitignore
27 Bytes
Generate Importance Scores.ipynb
200.3 kB
TF_MoDISco_TAL_GATA.ipynb
3.5 MB
grab_model_and_data.sh
1.1 kB
grab_scores_for_modisco.sh
742 Bytes
other
InteractiveViz_TF_MoDISco_TAL_GATA.ipynb
436.7 kB
TF_MoDISco_TAL_GATA_With_Filter_Embeddings.ipynb
1.3 MB
TF_MoDISco_TAL_GATA_withpynndescent.ipynb
6.9 MB
modisco
README.md
2 Bytes
__init__.py
439 Bytes
affinitymat
__init__.py
113 Bytes
core.py
42.3 kB
transformers.py
16.9 kB
aggregator.py
79.4 kB
backend
__init__.py
2.4 kB
tensorflow_backend.py
8.3 kB
theano_backend.py
6.9 kB
cluster
__init__.py
44 Bytes
core.py
19.9 kB
phenograph
__init__.py
87 Bytes
bruteforce_nn.py
2.6 kB
cluster.py
7.2 kB
core.py
17.1 kB
louvain
linux-community
66.7 kB
linux-convert
30.3 kB
linux-hierarchy
23.9 kB
louvain-readme.txt
3.9 kB
modisco-readme.txt
162 Bytes
osx-community
82.5 kB
osx-convert
28.5 kB
osx-hierarchy
21.1 kB
phenograph-readme.txt
216 Bytes
run_leiden
4.9 kB
clusterinit
__init__.py
23 Bytes
memeinit.py
9.0 kB
coordproducers.py
44.1 kB
core.py
54.9 kB
gammamix.py
7.9 kB
hit_scoring
__init__.py
97 Bytes
densityadapted_hitscoring.py
43.4 kB
exemplar_based_hitscoring.py
25.7 kB
fast_hit_scoring.py
9.4 kB
metaclusterers.py
15.5 kB
nearest_neighbors.py
823 Bytes
pattern_filterer.py
3.2 kB
seqlet_embedding
__init__.py
134 Bytes
advanced_gapped_kmer.py
18.4 kB
core.py
375 Bytes
gapped_kmer.py
9.8 kB
onehot_model_output.py
1.9 kB
tfmodisco_workflow
__init__.py
125 Bytes
seqlets_to_patterns.py
56.2 kB
workflow.py
19.1 kB
util.py
40.5 kB
value_provider.py
10.2 kB
visualization
__init__.py
118 Bytes
interactive.py
6.3 kB
matplotlibhelpers.py
4.3 kB
tsne.py
703 Bytes
viz_sequence.py
6.6 kB
scripts
tfmodisco.py
2.6 kB
setup.py
1.2 kB
test
.gitignore
29 Bytes
nb_test
.gitignore
57 Bytes
talgata
GetActivationsTALGATA.ipynb
216.2 kB
TF MoDISco TAL GATA with Activations.ipynb
2.2 MB
grab_model_and_data.sh
1.1 kB
test_core.py
4.9 kB
test_tfmodisco_workflow.py
11.0 kB