{"preEpidemicCensus": {"subLocationCensuses": [{"subLocationCensuses": [], "numberOfPeople": 1659600, "nameOfAdministrativeUnit": "67", "class": "edu.pitt.apollo.types.v4_0_1.PreEpidemicEcosystemCensus"}, {"subLocationCensuses": [], "numberOfPeople": 429000, "nameOfAdministrativeUnit": "76", "class": "edu.pitt.apollo.types.v4_0_1.PreEpidemicEcosystemCensus"}], "numberOfPeople": 32939200, "referenceId": 4, "nameOfAdministrativeUnit": "39", "class": "edu.pitt.apollo.types.v4_0_1.PreEpidemicEcosystemCensus"}, "causalPathogenIsolates": [], "caseDefinitions": [{"investigationDefinition": "Laboratory confirmation. Tests included antigen capture, IgM ELISA, and/or qRT-PCR", "apolloLabel": "CONFIRMED_CASE", "investigationLabel": "Proven case", "class": "edu.pitt.apollo.types.v4_0_1.CaseDefinition"}], "infections": [{"infectionAcquisitionsFromInfectedHosts": [{"infectedHost": "9606", "basicReproductionNumbers": [], "inoculationRate": {"class": "edu.pitt.apollo.types.v4_0_1.Rate"}, "transmissionProbabilities": [], "beta": {"class": "edu.pitt.apollo.types.v4_0_1.Rate"}, "class": "edu.pitt.apollo.types.v4_0_1.InfectionAcquisitionFromInfectedHost"}], "pathogen": {"ncbiTaxonId": "186540", "class": "edu.pitt.apollo.types.v4_0_1.ApolloPathogenCode"}, "infectionAcquisitionsFromColonizedHosts": [], "infectionAcquisitionsFromContaminatedThings": [], "infectiousDiseases": [{"otherIntervals": [], "causalPathogen": {"ncbiTaxonId": "186540", "class": "edu.pitt.apollo.types.v4_0_1.ApolloPathogenCode"}, "disease": "37109004", "speciesWithDisease": "9606", "diseaseOutcomesWithProbabilities": [{"title": "Case fatality rate", "diseaseOutcome": "DEATH", "probability": {"probability": 0.71, "class": "edu.pitt.apollo.types.v4_0_1.ProbabilisticParameter"}, "class": "edu.pitt.apollo.types.v4_0_1.DiseaseOutcomeWithProbability"}], "class": "edu.pitt.apollo.types.v4_0_1.InfectiousDisease"}], "host": "9606", "class": "edu.pitt.apollo.types.v4_0_1.Infection"}], "causalPathogens": [{"ncbiTaxonId": "186540", "class": "edu.pitt.apollo.types.v4_0_1.ApolloPathogenCode"}], "populationInfectionSurveys": [], "acknowledgements": [], "epidemicPeriod": {"endDateDefinition": "LAST_LAB_CASE_CONFIRMATION", "startDateDefinition": "FIRST_LAB_CASE_CONFIRMATION", "endDate": "2012-11-17 00:00:00 +0000", "startDate": "2012-11-13 00:00:00 +0000", "class": "edu.pitt.apollo.types.v4_0_1.EpidemicPeriod"}, "epidemicCaseCounts": [{"totalFatalCaseCount": {"temporalCountArrayWithUniformIntervals": {"class": "edu.pitt.apollo.types.v4_0_1.TemporalCountArrayWithUniformIntervals"}, "referenceId": 2, "class": "edu.pitt.apollo.types.v4_0_1.CaseCount", "caseCountArray": {"class": "edu.pitt.apollo.types.v4_0_1.VariableCategoryValueTree"}, "caseDefinitionsIncluded": ["CONFIRMED_CASE"], "totalCount": 4, "countTitle": "Total fatal cases", "caseCountArrayDescription": {"resetDates": [], "dateSpansWithNoDataCollection": [], "class": "edu.pitt.apollo.types.v4_0_1.CaseCountArrayDescription"}}, "otherCaseCounts": [], "totalCaseCount": {"temporalCountArrayWithUniformIntervals": {"class": "edu.pitt.apollo.types.v4_0_1.TemporalCountArrayWithUniformIntervals"}, "referenceId": 2, "class": "edu.pitt.apollo.types.v4_0_1.CaseCount", "caseCountArray": {"class": "edu.pitt.apollo.types.v4_0_1.VariableCategoryValueTree"}, "caseDefinitionsIncluded": ["CONFIRMED_CASE"], "totalCount": 7, "countTitle": "Total cases", "caseCountArrayDescription": {"resetDates": [], "dateSpansWithNoDataCollection": [], "class": "edu.pitt.apollo.types.v4_0_1.CaseCountArrayDescription"}}, "class": "edu.pitt.apollo.types.v4_0_1.EpidemicCaseCounts"}], "populationSerologySurveys": [], "reviewedBy": ["2014-11-18 M. Wagner"], "transmissionTrees": [], "curator": "Virginia Dato", "relativeRiskDataSets": [], "references": [{"title": "Genomic analysis of filoviruses associated with four viral hemorrhagic fever outbreaks in Uganda and the Democratic Republic of the Congo in 2012", "id": 0, "publication": "Virology. 2013 Aug 1;442(2):97-100. doi: 10.1016/j.virol.2013.04.014. Epub 2013 May 25.", "pubMedId": 23711383, "url": "http://www.ncbi.nlm.nih.gov/pubmed/23711383", "class": "edu.pitt.apollo.types.v4_0_1.Reference"}, {"title": "Ebola in Uganda", "id": 1, "publication": "Global Alert and Response (GAR) 17 November 2012", "class": "edu.pitt.apollo.types.v4_0_1.Reference"}, {"title": "Ebola in Uganda", "id": 2, "publication": "Global Alert and Response (GAR) 23 November 2012", "url": "http://www.who.int/csr/don/2012_11_23_ebola/en/", "class": "edu.pitt.apollo.types.v4_0_1.Reference"}, {"title": "Ebola in Uganda - update", "id": 3, "publication": "Global Alert and Response (GAR) 30 November 2012", "url": "http://www.who.int/csr/don/2012_11_30_ebola/en/", "class": "edu.pitt.apollo.types.v4_0_1.Reference"}, {"title": "Uganda", "id": 4, "publication": "GeoHive, citing Uganda Bureau of Statistics population 2011-07-01 projection", "url": "http://www.geohive.com/cntry/uganda.aspx", "class": "edu.pitt.apollo.types.v4_0_1.Reference"}], "contactDefinitions": [], "class": "edu.pitt.apollo.types.v4_0_1.Epidemic", "infectiousDiseaseControlStrategies": [{"controlMeasureStartTime": [], "controlMeasureStopTime": [], "templatedInfectiousDiseaseControlMeasureUrlsForSoftware": [], "logisticalSystems": [], "description": "Experts in the area of field epidemiology, health promotion, logistics management, and infection prevention and control , have been mobilized by WHO through the Global Outbreak Alert and Response Network (GOARN), to provide support to the response.", "location": {"class": "edu.pitt.apollo.types.v4_0_1.Location"}, "class": "edu.pitt.apollo.types.v4_0_1.InfectiousDiseaseControlMeasure"}, {"controlMeasureStartTime": [], "controlMeasureStopTime": [], "templatedInfectiousDiseaseControlMeasureUrlsForSoftware": [], "logisticalSystems": [], "description": "Social mobilization teams are working closely with traditional healers and religious leaders to raise awareness on prevention and control of the disease.", "location": {"class": "edu.pitt.apollo.types.v4_0_1.Location"}, "class": "edu.pitt.apollo.types.v4_0_1.InfectiousDiseaseControlMeasure"}], "epidemicZones": [], "editHistory": ["created on 09_21_2014", "Jan 28, 2016 at 12:22:50"], "caseLists": [], "administrativeLocations": ["67", "76"]}