Published November 22, 2021 | Version v1
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Synthetic cryo electron subtomograms containing biomolecular complexes with continuous conformational variability, used for validating TomoFlow method

  • 1. IMPMC - UMR 7590 CNRS, Sorbonne Université, Paris, France

Description

Two datasets used for validating TomoFlow method, an optical-flow based approach for analyzing continuous conformational variability of biomolecular complexes in cryo electron subtomograms. The TomoFlow method and the methods used to synthesize the two test datasets have been fully described in the following article: "M. Harastani, M. Eltsov, A. Leforestier, S. Jonic, TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow, Journal of Molecular Biology (2021), doi: https://doi.org/10.1016/j.jmb.2021.167381". Additionally, this article describes a test of TomoFlow using one experimental cryo electron tomography dataset (available in EMPIAR and EMDB databases under the accession codes EMPIAR-10679 and EMD-12699). 

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Additional details

Related works

Is supplement to
Journal article: 10.1016/j.jmb.2021.167381 (DOI)
Other: https://hal.science/hal-03452809 (URL)

Funding

Agence Nationale de la Recherche
CRYOCHROM – Integrated structural analysis of eukaryotic chromatin in situ._x000D_ Are nucleosome conformation and local order related to chromatin functional state? ANR-20-CE11-0020

References

  • M. Harastani, M. Eltsov, A. Leforestier, S. Jonic, TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow, Journal of Molecular Biology (2021), doi: https://doi.org/10.1016/j.jmb.2021.167381