Synthetic cryo electron subtomograms containing biomolecular complexes with continuous conformational variability, used for validating TomoFlow method
Creators
- 1. IMPMC - UMR 7590 CNRS, Sorbonne Université, Paris, France
Description
Two datasets used for validating TomoFlow method, an optical-flow based approach for analyzing continuous conformational variability of biomolecular complexes in cryo electron subtomograms. The TomoFlow method and the methods used to synthesize the two test datasets have been fully described in the following article: "M. Harastani, M. Eltsov, A. Leforestier, S. Jonic, TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow, Journal of Molecular Biology (2021), doi: https://doi.org/10.1016/j.jmb.2021.167381". Additionally, this article describes a test of TomoFlow using one experimental cryo electron tomography dataset (available in EMPIAR and EMDB databases under the accession codes EMPIAR-10679 and EMD-12699).
Files
Files
(8.4 GB)
Name | Size | Download all |
---|---|---|
md5:c73ba7599ace030b14de2e52847acab7
|
4.2 GB | Download |
md5:57ddac1ec2e7c3df1cabcbe490a9043e
|
4.2 GB | Download |
Additional details
Related works
- Is supplement to
- Journal article: 10.1016/j.jmb.2021.167381 (DOI)
- Other: https://hal.science/hal-03452809 (URL)
Funding
- Agence Nationale de la Recherche
- CRYOCHROM – Integrated structural analysis of eukaryotic chromatin in situ._x000D_ Are nucleosome conformation and local order related to chromatin functional state? ANR-20-CE11-0020
References
- M. Harastani, M. Eltsov, A. Leforestier, S. Jonic, TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow, Journal of Molecular Biology (2021), doi: https://doi.org/10.1016/j.jmb.2021.167381