Modular Image Analysis
A Fiji plugin providing a modular framework for assembling image and object analysis workflows
Automated
Workflows can be automated from initial image loading through processing, object detection, measurement extraction, visualisation, and data exporting
Modular
Near 200 modules integrated with key Fiji plugins such as BioFormats, TrackMate and Weka Trainable Segmentation
High throughput
Workflows are, by default, compatible with batch processing multiple files within a single folder
Compatible
Designed for compatibility with spatially-calibrated 5D images, yielding image and object measurements in both pixel and physical units
Extensible
Functionality can be extended via integration with Fiji’s scripting interface or with Java classes that extend the core MIA framework
Get started
Guides
List of modules