Process
Image processing operations which act on a pixel level, such as image filtering or thresholding.
Binary
Image operations which either act binary images. Binary images are 8-bit with 255-intensity background and 0-intensity objects.
Threshold
Operations binarising images from the workspace. Thresholds can be calculated automatically or applied manually.
Apply CLAHE
Applies the MPICBG implementation of CLAHE (Contrast Limited Adaptive Histogram Equalization).
Bleaching correction
Apply bleaching correction to a specified image.
Colour deconvolution
Applies the View
Combing correction
Applies an integer pixel row shift to every other row (starting with top-most row).
Filter image
Apply intensity filters to an image in the workspace.
Image calculator
Apply pixel-wise intensity calculations for two images of matching dimensions.
Image math
Applies a mathematical operation to all pixels of the input image stack.
Image type converter
Change the bit-depth of an image stack.
Invert image intensity
Invert intensity of each pixel.
Manually edit image
Displays an image from the workspace, allowing the user to make manual edits, before saving it back into the workspace.
Normalise intensity
Sets the intensity to maximise the dynamic range of the image.
Weka probability maps
Performs pixel classification using the WEKA Trainable Segmentation plugin.
White balance correction
Apply whitebalance correction to an image based on a reference region (specified as an object).