Quality control
- Population QC (based on UKB label and filter out outliers in PC space (10 PC’s)) link
- Phenotype QC link
- Monocyte technical covariates and multiple modes in monocyte count link
GWAS tries
- First attempt link
- Sanity check of GWAS runs using GCP link
Misc analysis
- Splitting data into training, validation, and test sets link
- REML link
- REML on MESA models link
- REML on 10 tissues CTIMP models (GTEx V8) link
- REML on MESA models with common genes link
PRS/PTRS results
- First look at PTRS/PRS on GTEx V8 whole blood CTIMP model link
- MESA PTRS link
- PTRS with LD block based pruning or mashr p-value link