iPS.zip
iPS
code
20171219_iPS-differentiation-analysis_HEC.ipynb
479.7 kB
20171219_iPS-differentiation-analysis_NEC.ipynb
502.5 kB
20180427_RPE-analysis.ipynb
372.5 kB
20190731_iPS_live-dead-apoptosis-classification.ipynb
1.0 MB
Fig3_iPS-live-dead-apoptosis-plots.ipynb
275.5 kB
Fig4_iPS-RPE-plots.ipynb
123.4 kB
fig_data
Fig3_iPS_Annexin-PI-scatter.npz
1.1 MB
Fig3_iPS_FSC-BSC-scatter.npz
3.1 MB
Fig3_iPS_live-apoptotic_SVMscore-hist.npz
8.1 kB
Fig3_iPS_live-apoptotic_main_SVMscore-hist.npz
8.1 kB
Fig3_iPS_live-dead_SVMscore-hist.npz
8.1 kB
Fig4_RPE-vs-retino_CellMask-hist.npz
208.2 kB
Fig4_RPE-vs-retino_SVMscore-hist.npz
8.1 kB
Fig4_iPS-vs-hec_SVMscore-hist.npz
8.1 kB
Fig4_iPS-vs-hec_rBC2LCN-hist.npz
159.5 kB
Fig4_iPS-vs-nec_SVMscore-hist.npz
8.1 kB
Fig4_iPS-vs-nec_rBC2LCN-hist.npz
83.7 kB
header.py
5.4 kB
lib
gcs
__init__.py
26 Bytes
gate.py
36.3 kB
gcs.py
27.1 kB
gcs_data.py
6.2 kB
mpl_plotter.py
17.7 kB
utils.py
755 Bytes
gcs_old
__init__.py
21 Bytes
fcs_data.py
5.5 kB
gate.py
1.5 kB
mpl_plotter.py
4.5 kB
npz_converter.py
3.1 kB
utils.py
1.9 kB
data
20171219
iPS_HEC
iPS_HEC_0.npz
13.8 MB
iPS_HEC_1.npz
136.5 MB
iPS_HEC_10.npz
137.6 MB
iPS_HEC_11.npz
137.4 MB
iPS_HEC_2.npz
136.9 MB
iPS_HEC_3.npz
137.4 MB
iPS_HEC_4.npz
137.4 MB
iPS_HEC_5.npz
137.5 MB
iPS_HEC_6.npz
137.6 MB
iPS_HEC_7.npz
137.4 MB
iPS_HEC_8.npz
137.5 MB
iPS_HEC_9.npz
137.4 MB
path.pkl
2.2 kB
iPS_NEC
iPS_NEC_0.npz
13.6 MB
iPS_NEC_1.npz
135.8 MB
iPS_NEC_2.npz
135.9 MB
iPS_NEC_3.npz
135.7 MB
iPS_NEC_4.npz
135.6 MB
iPS_NEC_5.npz
135.8 MB
iPS_NEC_6.npz
135.9 MB
path.pkl
2.2 kB
20180427
RPE
RPE_8week_retinoblastoma_0.npz
137.2 MB
RPE_8week_retinoblastoma_1.npz
136.8 MB
RPE_8week_retinoblastoma_2.npz
137.3 MB
RPE_8week_retinoblastoma_3.npz
138.4 MB
RPE_8week_retinoblastoma_4.npz
139.0 MB
RPE_8week_retinoblastoma_5.npz
139.2 MB
RPE_8week_retinoblastoma_6.npz
139.6 MB
RPE_8week_retinoblastoma_7.npz
139.5 MB
RPE_8week_retinoblastoma_8.npz
139.8 MB
RPE_8week_retinoblastoma_9.npz
140.2 MB
path.pkl
1.2 kB
20190730
.ipynb_checkpoints
iPS
iPS_AnnexinV_2_1.npz
159.6 MB
iPS_AnnexinV_2_2.npz
159.6 MB
iPS_PI_3_1.npz
159.4 MB
iPS_PI_3_2.npz
159.7 MB
iPS_PI_AnnexinV_1_1.npz
322.6 MB
iPS_PI_AnnexinV_1_10.npz
312.5 MB
iPS_PI_AnnexinV_1_2.npz
322.8 MB
iPS_PI_AnnexinV_1_3.npz
322.7 MB
iPS_PI_AnnexinV_1_4.npz
322.4 MB
iPS_PI_AnnexinV_1_5.npz
322.5 MB
iPS_PI_AnnexinV_1_6.npz
322.4 MB
iPS_PI_AnnexinV_1_7.npz
322.2 MB
iPS_PI_AnnexinV_1_8.npz
321.6 MB
iPS_PI_AnnexinV_1_9.npz
319.1 MB
iPS_unstained_4_1.npz
157.2 MB
iPS_unstained_4_2.npz
158.4 MB
path.pkl
1.3 kB
figures
Fig3.svg
222.7 kB
Fig4.svg
179.1 kB
RPE-vs-retino_cellmask-vs-PI.svg
70.7 kB
RPE-vs-retino_roc-curve.svg
23.9 kB
RPE-vs-retinoblastoma_gating-plots.svg
163.9 kB
dGC-waveform_iPS.svg
15.9 kB
iPS-vs-hec_calcein-vs-rBC2LCN.svg
66.3 kB
iPS-vs-hec_gating-plots.svg
224.0 kB
iPS-vs-hec_roc-curve.svg
23.8 kB
iPS-vs-nec_calcein-vs-rBC2LCN.svg
58.0 kB
iPS-vs-nec_gating-plots.svg
187.2 kB
iPS-vs-nec_roc-curve.svg
23.8 kB
iPS_FSC-BSC-scatter-plot.svg
40.0 kB
iPS_alive-dead-apoptotic-confusion-matrix_fscbsc.svg
9.4 kB
iPS_alive-dead-apoptotic-confusion-matrix_isgc.svg
9.4 kB
iPS_live-apoptotic_ROCcurve.svg
26.3 kB
iPS_live-apoptotic_main_ROCcurve.svg
26.1 kB
iPS_live-dead-apoptosis_gating-plots.svg
146.7 kB
iPS_live-dead_ROCcurve.svg
26.2 kB
ssGC-waveform_iPS.svg
22.9 kB
requirements.txt
65 Bytes