Supplementary table 14: The infiltration levels of various immune cells downloaded from http://timer.comp-genomics.org.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, cell_type,B cell_TIMER,T cell CD4+_TIMER,T cell CD8+_TIMER,Neutrophil_TIMER,Macrophage_TIMER,Myeloid dendritic cell_TIMER,B cell naive_CIBERSORT,B cell memory_CIBERSORT,B cell plasma_CIBERSORT,T cell CD8+_CIBERSORT,T cell CD4+ naive_CIBERSORT,T cell CD4+ memory resting_CIBERSORT,T cell CD4+ memory activated_CIBERSORT,T cell follicular helper_CIBERSORT,T cell regulatory (Tregs)_CIBERSORT,T cell gamma delta_CIBERSORT,NK cell resting_CIBERSORT,NK cell activated_CIBERSORT,Monocyte_CIBERSORT,Macrophage M0_CIBERSORT,Macrophage M1_CIBERSORT,Macrophage M2_CIBERSORT,Myeloid dendritic cell resting_CIBERSORT,Myeloid dendritic cell activated_CIBERSORT,Mast cell activated_CIBERSORT,Mast cell resting_CIBERSORT,Eosinophil_CIBERSORT,Neutrophil_CIBERSORT,B cell naive_CIBERSORT-ABS,B cell memory_CIBERSORT-ABS,B cell plasma_CIBERSORT-ABS,T cell CD8+_CIBERSORT-ABS,T cell CD4+ naive_CIBERSORT-ABS,T cell CD4+ memory resting_CIBERSORT-ABS,T cell CD4+ memory activated_CIBERSORT-ABS,T cell follicular helper_CIBERSORT-ABS,T cell regulatory (Tregs)_CIBERSORT-ABS,T cell gamma delta_CIBERSORT-ABS,NK cell resting_CIBERSORT-ABS,NK cell activated_CIBERSORT-ABS,Monocyte_CIBERSORT-ABS,Macrophage M0_CIBERSORT-ABS,Macrophage M1_CIBERSORT-ABS,Macrophage M2_CIBERSORT-ABS,Myeloid dendritic cell resting_CIBERSORT-ABS,Myeloid dendritic cell activated_CIBERSORT-ABS,Mast cell activated_CIBERSORT-ABS,Mast cell resting_CIBERSORT-ABS,Eosinophil_CIBERSORT-ABS,Neutrophil_CIBERSORT-ABS,B cell_QUANTISEQ,Macrophage M1_QUANTISEQ,Macrophage M2_QUANTISEQ,Monocyte_QUANTISEQ,Neutrophil_QUANTISEQ,NK cell_QUANTISEQ,T cell CD4+ (non-regulatory)_QUANTISEQ,T cell CD8+_QUANTISEQ,T cell regulatory (Tregs)_QUANTISEQ,Myeloid dendritic cell_QUANTISEQ,uncharacterized cell_QUANTISEQ,T cell_MCPCOUNTER,T cell CD8+_MCPCOUNTER,cytotoxicity score_MCPCOUNTER,NK cell_MCPCOUNTER,B cell_MCPCOUNTER,Monocyte_MCPCOUNTER,Macrophage/Monocyte_MCPCOUNTER,Myeloid dendritic cell_MCPCOUNTER,Neutrophil_MCPCOUNTER,Endothelial cell_MCPCOUNTER,Cancer associated fibroblast_MCPCOUNTER,Myeloid dendritic cell activated_XCELL,B cell_XCELL,T cell CD4+ memory_XCELL,T cell CD4+ naive_XCELL,T cell CD4+ (non-regulatory)_XCELL,T cell CD4+ central memory_XCELL,T cell CD4+ effector memory_XCELL,T cell CD8+ naive_XCELL,T cell CD8+_XCELL,T cell CD8+ central memory_XCELL,T cell CD8+ effector memory_XCELL,Class-switched memory B cell_XCELL,Common lymphoid progenitor_XCELL,Common myeloid progenitor_XCELL,Myeloid dendritic cell_XCELL,Endothelial cell_XCELL,Eosinophil_XCELL,Cancer associated fibroblast_XCELL,Granulocyte-monocyte progenitor_XCELL,Hematopoietic stem cell_XCELL,Macrophage_XCELL,Macrophage M1_XCELL,Macrophage M2_XCELL,Mast cell_XCELL,B cell memory_XCELL,Monocyte_XCELL,B cell naive_XCELL,Neutrophil_XCELL,NK cell_XCELL,T cell NK_XCELL,Plasmacytoid dendritic cell_XCELL,B cell plasma_XCELL,T cell gamma delta_XCELL,T cell CD4+ Th1_XCELL,T cell CD4+ Th2_XCELL,T cell regulatory (Tregs)_XCELL,immune score_XCELL,stroma score_XCELL,microenvironment score_XCELL,B cell_EPIC,Cancer associated fibroblast_EPIC,T cell CD4+_EPIC,T cell CD8+_EPIC,Endothelial cell_EPIC,Macrophage_EPIC,NK cell_EPIC,uncharacterized cell_EPIC TCGA-OR-A5J1-01,0.108256599,0.117024401,0.201176367,0.112595441,0.053660446,0.493232283,0.002937309,0.002282572,0,0.112941117,0,0.208749661,0,0.020153632,0.049802666,0,0.006238611,0.042323607,0.098307378,0,0,0.379331427,0,0.014150863,0.061077431,0,0.001703727,0,0.000551951,0.000428919,0,0.021222828,0,0.039226264,0,0.00378708,0.009358446,0,0.001172301,0.007953052,0.018472994,0,0,0.071280379,0,0.002659096,0.011477094,0,0.000320148,0,0.008258647,0,0.031304799,0.028208114,0,0.002957125,0.021609605,0.00050952,0.003162086,0.012145538,0.891844567,0.88069967,0.350930121,0.275890642,0.071040897,1.179784585,4.1427534,4.1427534,1.130311744,3.7106335,6.90350278,36.92700342,0.077343634,0.001886212,3.23E-22,1.01E-18,0,0.029609054,0.019830461,0.002072089,0.015133959,0.003411927,7.55E-19,0.013544697,0.002364101,0,0.004285271,0.014922369,0,0,1.26E-19,0.037820711,0.015699329,0.01676985,0.008380706,0.004747277,2.89E-18,0.010456279,0,4.65E-19,0,0.007657823,0.058421684,0,5.41E-18,0.00739981,0.031246521,0.025804937,0.034805552,0.007461185,0.042266736,0.001269276,0.00237286,0.040844676,0.022052426,0.045724596,0.015716932,7.29E-09,0.872019226 TCGA-OR-A5J2-01,0.114474694,0.106788231,0.213193017,0.112099046,0.065909202,0.490547523,0.046380291,0,0.151495204,0.073519038,0,0.083532984,0,0.057336199,0,0,0,0.046854915,0.022187757,0.044124866,0.020171143,0.413936379,0,0.030819913,0,0.00964131,0,0,0.013554439,0,0.044273816,0.02148562,0,0.024412152,0,0.016756256,0,0,0,0.013693146,0.006484276,0.012895301,0.005894929,0.120971112,0,0.009006986,0,0.002817631,0,0,0.020699107,0,0.01005507,0.057658003,0,0,0.085356832,0.004792729,0.040559026,0,0.780879233,4.885249085,0.629989541,0.399766597,0.1824108,1.024522437,3.283421432,3.283421432,1.147859649,7.017694131,15.04176086,95.14681691,0.049371453,5.38E-20,0.002375965,3.52E-18,0.000209978,0.032368097,0.055829333,0,0.010530471,0.010423388,0,0.035988421,0.010177561,0,0.010852562,0.060111996,3.37E-19,0.100873761,1.53E-18,0.097919503,0.006687592,0.003865616,0.006469221,0.010251719,0,0,1.95E-19,1.18E-19,0,0.041774373,0.022282159,0.010493741,3.79E-20,0,0.021353177,0.015669596,0.025688214,0.080492879,0.106181093,0.002223528,0.012605831,0.048540858,0.007943523,0.070874007,0.004020492,4.30E-10,0.853791759 TCGA-OR-A5J3-01,0.102440902,0.105614845,0.202602367,0.108903576,0.047358892,0.470323659,0.061034875,0,0.190537616,0.016494533,0.060717316,0.138748229,0,0,0,0,0.006825997,0.070830489,0.036003134,0,0,0.219405538,0,0.151911423,0.047490851,0,0,0,0.007282935,0,0.022735741,0.001968196,0.007245043,0.016556016,0,0,0,0,0.000814506,0.008451789,0.004296044,0,0,0.026180381,0,0.018126703,0.005666806,0,0,0,0.025883367,0,0.018272021,0.068511443,0,0.006670856,0.070097367,0,9.73E-05,0,0.810467654,0.735323162,0,0.529701033,0.066776075,0.489201111,0.983568765,0.983568765,0.726310676,10.64138472,10.84009697,29.10329429,0.018290783,0.003494482,1.70E-19,0,0,0.014156947,0.006823283,9.70E-19,0.000375457,8.88E-19,1.92E-18,0,0.000559483,3.07E-18,0,0.013271118,1.46E-19,0.050869144,0.044121037,1.26E-18,0,0,6.61E-20,0,0.000920729,0.006945291,0,0.000411181,6.05E-18,0.062014627,7.86E-20,0.015052869,6.67E-18,0.014481739,0,1.01E-18,0.007484274,0.032070131,0.039554405,0.001711251,0.003024783,0.040014288,0.011090439,0.029777981,0.012461458,7.30E-09,0.901919793 TCGA-OR-A5J5-01,0.102013332,0.111165878,0.196239081,0.107726111,0.050190892,0.470978806,0.25370439,0,0.039644695,0.037347174,0,0.146511521,0,0.011161997,0.00077804,0,0.048454401,0.02179442,0.078583574,0.211280949,0.007589553,0.103569216,0,0,0.039580069,0,0,0,0.025699685,0,0.004015919,0.003783185,0,0.014841288,0,0.001130685,7.88E-05,0,0.004908322,0.002207726,0.00796034,0.021402286,0.000768805,0.010491329,0,0,0.004009372,0,0,0,0,0,0,0.143209103,0,0.017615323,0.050718834,0.003766191,0.001557142,0,0.783133406,2.237028617,0.065528718,0.29792008,0.096066243,1.710608,2.015908573,2.015908573,0.562162147,9.674477167,2.862003673,38.99732671,0.033317138,0.010282846,7.23E-19,0,1.20E-18,0.060227387,1.38E-17,0,2.70E-19,1.17E-19,2.19E-17,0.033152235,0,0.001097986,1.35E-19,0,0,0,6.25E-18,0,0,0.003396,0.007287831,0.001978062,2.69E-18,0.000674639,1.53E-18,1.68E-21,3.56E-18,0.046103921,5.20E-19,0.005031992,0,0.055013851,0.013504673,2.07E-19,0.008623698,1.68E-19,0.008623698,0.000604521,0.00833606,0.012415667,0.022754075,0.069981913,0.003669206,5.54E-08,0.882238503 TCGA-OR-A5J6-01,0.158062013,0.093103152,0.24890831,0.103336722,0.126931894,0.472417897,0.005805686,0,0.006419661,0.039861766,0,0.091535909,0,0.002789199,0.001328336,0,0.001481206,0.030483908,0.094641779,0,0,0.648498924,0.006260473,0.003479217,0.067413935,0,0,0,0.001551388,0,0.001715454,0.010651811,0,0.024460111,0,0.000745326,0.000354956,0,0.000395806,0.008145872,0.025290057,0,0,0.173291068,0.001672916,0.000929712,0.018014267,0,0,0,0.002858485,0,0.032512299,0.112090468,0,0.004024374,0.075062411,0.000929229,0.002312805,0,0.770209929,1.200935978,0.228558207,0.618994115,0.111605865,8.660863329,10.82448335,10.82448335,3.768749602,9.276099721,12.08952416,13.45577703,8.08E-21,0.015451198,0,9.88E-19,4.01E-19,0.019189043,0,3.76E-19,0.025499492,0.016345692,1.38E-20,0.00236572,0,0,0.060493503,0.086406072,0,0.010718759,0,0.129191341,0.029490643,0.026272071,0.023323479,0.022471575,0,0.046486926,0.003963199,0.000728466,2.46E-18,0.000950503,0.026039427,6.26E-19,0,0,0.024330992,3.62E-21,0.13374787,0.048562416,0.182310285,4.74E-05,0.007752041,0.18168287,4.35E-05,0.041964247,0.579851776,1.11E-06,0.188657021 TCGA-OR-A5J7-01,0.192017386,0.09595203,0.275774396,0.089366625,0.071239047,0.460850387,0.052982838,0,0.094926765,0.004426637,0,0.107660114,0,0.039621764,0,0,0,0.064995205,0.097300749,0,0,0.17311542,0,0.305226554,0,0.059743954,0,0,0.003901388,0,0.006989926,0.000325955,0,0.007927545,0,0.002917546,0,0,0,0.004785918,0.007164734,0,0,0.012747343,0,0.022475337,0,0.004399242,0,0,0.06630192,0.002155987,0.018998125,0,0,0.002237115,0,0,0,0.053611965,0.856694887,0.648551693,0.062599876,0.108747977,0.056094865,0.325624996,1.32594741,1.32594741,0.31626484,4.327078852,14.28247384,36.09303702,0.017517406,0.013466657,0,6.26E-18,0,0,0,0,6.10E-19,0,1.50E-18,0.009996414,0.006007481,5.06E-19,0,0.046390537,1.38E-18,0,0,0.058025439,1.59E-19,0.002075842,0.002500091,5.10E-19,0,5.06E-18,3.54E-18,1.79E-20,3.53E-18,0.009433437,7.71E-19,0.003155529,0,1.79E-19,0.229385135,0,0.008977771,0.023195268,0.03217304,0.001252702,0.00523904,0.021130304,0.01020144,0.048117223,0.004125976,1.76E-08,0.909933297 TCGA-OR-A5J8-01,0.145984389,0.136565077,0.318242528,0.142195815,0.27612153,0.534854301,0,0,0.00479818,0.10793036,0,0.036449194,0,0.047776703,0.00216156,0,0,0.020672922,0.003327635,0,0.087116969,0.67337156,0,0,0,0.016394916,0,0,0,0,0.005239349,0.11785401,0,0.039800513,0,0.052169529,0.002360305,0,0,0.022573692,0.003633594,0,0.095126933,0.735284664,0,0,0,0.017902346,0,0,0.003773665,0.089323298,0.112742308,0,0.006731867,0.018326898,0.003570932,0.027957392,0.003711471,0.01021353,0.723648639,5.224478351,9.056596504,2.677059207,0.240761713,0.406583823,42.26263,42.26263,5.367075326,4.398251191,15.57624519,1323.658174,0.13352241,0,1.66E-18,0.012425423,2.00E-19,2.11E-18,1.56E-19,4.31E-05,0.035585956,0.077082404,0.000305371,1.63E-18,0,0,0.051957405,0.055168757,0,0.303176732,1.19E-17,0.116982072,0.06583946,0.033128996,0.024002446,0,1.59E-19,0.120546406,0,2.41E-19,0,0.110687691,0.005784767,1.17E-18,0,0.006638586,0.122432672,0.034390955,0.182619484,0.181906047,0.364525531,0.000883235,0.352130071,3.99E-05,1.06E-06,0.053636564,0.11902973,2.85E-06,0.474276563 TCGA-OR-A5J9-01,0.100031706,0.111587727,0.211526652,0.112044715,0.05107009,0.468293363,0.052182352,0,0.066332586,0.12075848,0.001486658,0,0,0,0,0,0.01981575,0.050116664,0.299131373,0,0.00193805,0.335804288,0,0,0,0.0524338,0,0,0.006586915,0,0.008373082,0.015243197,0.000187659,0,0,0,0,0,0.002501318,0.006326166,0.037758991,0,0.000244638,0.042388168,0,0,0,0.006618655,0,0,0.011280039,0,0,0.088710998,0,0.004183439,0.068966593,0.001078055,0.002201261,0,0.823579615,1.351359164,0.196956876,0.714312582,0.194822256,0.897112904,1.776997969,1.776997969,0.408472261,8.267667058,25.98736388,97.52378323,0.009200233,0,1.04E-18,0,0,0.022607441,0,0,0,2.50E-18,3.82E-19,0.017897246,0.011888667,6.28E-19,0,0.091712137,1.65E-18,0.038195949,0,0.081496489,3.67E-20,0,0.001827544,0.004555741,1.64E-18,4.04E-18,0,5.15E-20,3.45E-19,0.033873939,0.008529571,0.002618982,2.55E-18,0.022488769,0.005202871,0,0.003037161,0.065136338,0.068173499,0.00310545,0.00180306,0.043547894,0.02097518,0.05649819,0.00096748,9.87E-11,0.873102745 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TCGA-CV-A460-01,0.193116614,0.191758725,0.294899596,0.20601657,0.028444322,0.709199152,0,0.003041121,0.055837005,0.136111231,0,0.189375876,0,0.095726957,0.061592133,0,0,0.032974892,0.015264584,0.053005374,0.117924256,0.171520177,0.05015365,0,0.006752361,0.00659366,0,0.004126724,0,0.002672076,0.049061095,0.119593914,0,0.166394809,0,0.084110337,0.054117829,0,0,0.028973336,0.013412202,0.046573087,0.103613958,0.150705928,0.044067424,0,0.005932951,0.005793509,0,0.003625939,0.051434931,0.167382313,0.046735232,0,0.067598752,0.017613944,0,0.011746451,0.05137645,0,0.586111928,10.82457793,7.64740775,11.83830334,0.321363475,6.388359962,18.84586623,18.84586623,9.238347462,5.43281472,7.717863868,481.6772917,0.437964076,0.129539143,0.0098844,0.040922341,0.000333629,0.003551138,0,0.000518644,0.049010096,0.081841784,0.022319366,0.060081979,0.014557008,0.004863174,0.029357377,0.019815272,9.68E-19,0.142514086,2.11E-18,0.127875994,0.034840204,0.026328675,0.009580137,0.014269519,0.056212029,0,0.003867151,0,1.73E-18,0.040322006,0.127365359,0.019348887,0,0.035763031,0.278013143,0.017467596,0.171566645,0.081270876,0.252837521,0.013658947,0.098383597,0.074709902,0.016987007,0.03036751,0.014756805,0.003328348,0.747807884 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TCGA-CV-A463-01,0.057754781,0.050402851,0.098282701,0.057611589,0,0.257890703,0,0.01799529,0.153848883,0.1577364,0,0.131960055,0,0.075087789,0,0,0,0.12317839,0.025228409,0.056599721,0.079512023,0.066552639,0.048070238,0.040683246,0,0.016220694,0.000713936,0.006612288,0,0.002823534,0.024139515,0.024749482,0,0.020705069,0,0.011781579,0,0,0,0.01932719,0.00395844,0.008880726,0.012475759,0.010442379,0.007542416,0.006383367,0,0.002545093,0.000112019,0.001037495,0.004213411,0.019975323,0.013376265,0,0.032574464,0.003860954,0.013777812,0.005463371,0.002211986,0,0.904546414,1.888388769,2.719023971,3.284430548,0.200467229,1.250006383,9.507366683,9.507366683,1.064946436,9.081773729,3.076967618,51.83347828,0.092625832,0.036511136,0,0,0,0.039066904,0,0.014977992,0.06114756,0.035955461,0.00861237,0.0279348,0.02644527,1.35E-18,0.002241727,0.011584336,0,2.71E-18,0,0.037363082,3.31E-19,0,0.007951356,0.020165591,0,0.009075895,0.000639763,0.000758704,7.37E-18,0.022083253,0.017480901,0.01146718,0.000417687,0.015165931,0.198118238,1.92E-18,0.086600409,0.005792168,0.092392577,0.001087319,0.019592107,0.064901141,0.03566404,0.015265211,0.00175327,5.72E-08,0.861736856 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TCGA-61-1995-01,0.069683491,0.233867655,0.18319712,0.130561818,0.172055598,0.537689309,0,0.001610498,0,0.072189183,0,0.232160648,0,0.019054154,0.069068565,0,0,0.034420273,0.03050083,0.016529292,0.031324836,0.48743742,0,0,0.005704301,0,0,0,0,0.000877136,0,0.039316873,0,0.126443191,0,0.01037759,0.03761727,0,0,0.018746541,0.016611869,0.009002458,0.017060653,0.26547627,0,0,0.003106771,0,0,0,0.01753663,0.035203205,0.089373783,0,0.038309071,0.012639438,0,0.005383425,0.026648554,0,0.774905894,26.07362373,1.582410276,1.859103662,0.264498979,1.68092056,24.1767424,24.1767424,2.875767974,9.498139213,6.670970404,102.6949049,0.230722481,0.045682587,0.006669846,0.023574088,0.013145211,0.022666309,0.060642068,0.001028804,0.006490809,0.037525559,0,0.022640831,0.003623452,0,0.048404988,0,1.91E-19,0.024138214,0,0.008267322,0.09490215,0.051680595,0.047484002,0.026460436,0,0.038573473,3.79E-19,1.39E-19,0,0,0.002958032,0.000804504,0.007740441,0.008637953,0.074320309,0,0.18243977,0.012069107,0.194508877,0.002480999,0.020544162,0.066037535,0.018807828,0.011173544,0.028407613,1.41E-09,0.852548319 TCGA-61-1998-01,0.026161895,0.146546656,0.131858473,0.135451535,0.118477291,0.481317988,0.016533121,0,0.002457853,0.007673328,0,0.10132313,0,0.012817393,0.00284506,0,0,0.037797395,0.067385684,0.361407484,0.023828555,0.361955827,0,0,0.003975171,0,0,0,0.005374548,0,0.000798993,0.002494427,0,0.032937885,0,0.004166648,0.000924865,0,0,0.012287088,0.02190558,0.117485497,0.007746131,0.117663751,0,0,0.001292239,0,0,0,0.013994053,0.030073355,0.059104286,0.039650091,0,0.007049298,0.018923449,0.000346758,0.007676453,0,0.823182258,20.0710353,0.276976532,2.085040991,0.102362042,2.628767358,14.15676091,14.15676091,2.288514142,3.406060167,9.518833761,544.8598029,0.198598172,0,0,0,0,0,1.87E-19,0.003697986,0,0,0,0.00015479,0.00462967,0,0.02394852,0.039984621,0,0.126454078,2.50E-18,0.078087602,0.079727894,0.063228831,0.030818149,0.010035739,1.08E-18,0.079383601,6.45E-19,5.58E-19,2.53E-18,0.005576498,0.010219806,0,0,0.003213813,0.150319155,1.74E-18,0.128730503,0.083443128,0.212173631,0.000964223,0.099860791,0.036224395,5.59E-05,0.030060797,0.020535265,0.000139024,0.812159589 TCGA-61-2000-01,0.189317176,0.247606971,0.077336192,0.154487269,0,0.42962176,0.026038172,0.001568834,0.009851628,0.024147034,0,0.188555276,0.004580282,0.053107,0.005914245,0,0,0.174697402,0.034524243,0.006761981,0.035893211,0.265072299,0.005864162,0.003509016,0,0.151758958,0,0.008156256,0.006872479,0.000414076,0.002600225,0.006373335,0,0.049767021,0.001208913,0.014016989,0.001560998,0,0,0.046109393,0.009112281,0.001784748,0.009473605,0.06996282,0.001547779,0.000926165,0,0.040055052,0,0.002152751,0.006383286,0.071777007,0.008287784,0.129534398,0,0.014889256,0,0.005809498,0.017621709,0,0.745697064,2.654426278,0.310433704,10.8263863,0.255132842,0.67439938,6.821791809,6.821791809,0.740018782,3.618271534,3.534463378,204.1285287,0.200096569,0.018859297,0.00519342,0.012099927,7.30E-19,1.48E-20,0,6.78E-19,1.17E-18,0.017074429,5.23E-18,0.027422297,0.004761689,8.46E-19,0.004268201,0.003279451,9.48E-19,0.048547845,0,0.042382785,0.053847912,0.031226571,0.023633176,0.011429436,0,0.011212528,0,0,4.11E-19,0.024815793,0.030859754,0.003062366,0.013922598,0.05556157,0.069643694,0.003070448,0.066411583,0.0263049,0.092716483,0.00147311,0.037551982,0.033215118,0.005923155,0.013919782,0.009775724,0.004441867,0.893699263 TCGA-61-2002-01,0.223329453,0.226648808,0.114462261,0.128373792,0.066083573,0.66388672,0.016304475,0,0.011719278,0.156869145,0,0.160077587,0,0.024837503,0.108684402,0,0,0.104938602,0.067572858,0.035347025,0.062581585,0.229200394,0.002143853,0,0,0.012434085,0,0.007289208,0.009061282,0,0.006513039,0.087180702,0,0.088963807,0,0.013803549,0.060401824,0,0,0.05832008,0.037553906,0.019644261,0.034779985,0.127379105,0.001191455,0,0,0.006910296,0,0.004051009,0.030533509,0.035463924,0.046171229,0.069930148,0,0.007070576,0,0.032373332,0.017125864,0,0.761331417,5.48739871,7.864187114,6.187779784,0.15246232,1.709379338,16.98915157,16.98915157,4.048965879,5.43591044,3.755025588,805.240307,0.278657198,0.059767329,0.005770618,0.002784683,0,1.39E-18,0.044491482,2.69E-21,0.023485768,0.101426289,0,0.030241553,3.13E-19,0,0.02152698,0,2.35E-18,0.040440144,0,0.040154608,0.094824799,0.058671315,0.02903936,0.009706134,1.77E-21,0.047444828,1.52E-18,5.22E-19,5.44E-19,0.028846664,0.062536855,0.023331445,6.22E-19,0.054688324,0.136848196,0,0.171170559,0.022271689,0.193442248,0.002225172,0.205697123,0.021709679,0.00573015,0.007363631,0.02014112,0.001096718,0.736036407 TCGA-61-2003-01,0.113464993,0.218630088,0.154237804,0.133768995,0.237851463,0.674248167,0,0.01275602,0,0.075314924,0,0.109045687,0,0.030979951,0.029395964,0,0,0.060415068,0.067903409,0.212064904,0.035316481,0.329689104,0.024731272,0,0,0.012387217,0,0,0,0.00824209,0,0.048663483,0,0.070458053,0,0.020017179,0.018993712,0,0,0.039036189,0.043874656,0.137022203,0.022819156,0.213023119,0.015979699,0,0,0.008003794,0,0,0.035181515,0.093119046,0.083886585,0.02185587,0.020439206,0.017319062,0,0.013736174,0.01819109,0.011029523,0.685241929,24.24781324,2.999643064,2.872763085,0.212526227,5.455070541,44.79762409,44.79762409,11.54450362,6.948140596,7.98684201,1073.080888,0.253235892,0.034499154,1.44E-19,0.00836158,0,0,0.032047512,0,0.00224583,0.019297262,0,0.015911174,0,0,0.035366564,0.017970968,1.13E-18,0.09449208,0,0.151947634,0.07200421,0.053440944,0.016522038,0.02438681,1.43E-19,0.064328821,0,0,2.10E-18,0.015970384,0,0.01988995,0,0.001251795,0.058768512,0,0.155220926,0.056231524,0.21145245,0.000398913,0.254291512,0.043554925,6.17E-06,0.033150736,0.025288574,1.16E-06,0.643308005 TCGA-61-2008-01,0.056137271,0.142605729,0.145878208,0.10087552,0.025344538,0.438590083,0.050847816,0,0.133138837,0.074566706,0,0.078265801,0,0.051891321,0.016330758,0,0,0.057873607,0.025652268,0,0.063702988,0.349182091,0,0,0,0.098547807,0,0,0.012886738,0,0.03374236,0.018897991,0,0.019835481,0,0.013151201,0.004138825,0,0,0.014667336,0.006501244,0,0.016144719,0.088495798,0,0,0,0.024975699,0,0,0.014103232,0.017294211,0.038540778,0.08904991,0,0.012727728,0,0.007764105,0.016188905,0,0.804331131,5.826474665,1.957832319,0.650104238,0.107127438,2.196055741,12.88912371,12.88912371,0.568566597,4.993306543,4.930272576,336.3486717,0.182861252,0.026879099,0,1.13E-18,2.32E-20,0.030252232,6.95E-20,0.007459736,0.007684044,0.004523353,0,0.018071335,0.001370575,0.000434807,0.004962007,0.002099813,2.10E-18,0.097914063,0,0.031919515,0.034503461,0.031303384,0.014413807,0.01837123,0,0.018228927,0,1.21E-19,4.81E-18,0.027392584,0.001223396,0.023330111,0,0.025165245,0.028432906,2.95E-18,0.073752512,0.050006938,0.12375945,0.004171297,0.075858429,0.020074506,0.013050871,0.016910088,0.012377047,6.74E-09,0.857557755 TCGA-61-2008-02,0.078874462,0.180393759,0.261735937,0.122036648,0.066181196,0.565317699,0.036731197,0,0,0.227706809,0,0.074481997,0,0.108560608,0.077070411,0,0.006310506,0.076034396,0.011511909,0.020984557,0.069175842,0.272083125,0.012350884,0,0,0.006997757,0,0,0.023955296,0,0,0.148505482,0,0.048575556,0,0.070800893,0.050263664,0,0.004115576,0.049587997,0.00750782,0.013685676,0.045114996,0.177446761,0.008054981,0,0,0.004563787,0,0,0.037837466,0.003843846,0.152261252,0.004774825,0.005719756,0.024080676,0,0.040364794,0.026242564,0.031523542,0.673351278,19.42143146,11.1469274,11.22680286,0.967256617,0.664886737,19.13075475,19.13075475,4.021367015,5.027903336,5.736116548,162.4632192,0.31312258,0.028354041,0,0.033801644,0.005400959,0.039335798,0.024694804,0.011635188,0.079595495,0.082804323,0.045068302,0.035054232,0.00159201,5.62E-19,0.033558902,0.005993993,0.000102681,0,5.75E-20,0.003607253,0.036179354,0.035537926,0.015750475,0.01388571,3.52E-18,0.013680697,0,0,0.005972934,0.028071185,0.05635236,0.029389438,1.18E-18,0.022407544,0.194214747,5.80E-18,0.144487181,0.002996997,0.147484178,0.001491384,0.032642513,0.047452654,0.0345547,0.016595443,0.020095334,0.001852966,0.845315005 TCGA-61-2009-01,0.060912778,0.101178367,0.224821002,0.111382848,0.085611378,0.450830535,0,0.000314639,0.074810623,0.130459662,0,0.178476519,0.004708762,0.014139105,0.012060185,0,0,0.044222105,0.030945263,0,0.065013184,0.403471785,0.023976727,0,0,0.01728102,0,0.000120422,0,0.00010612,0.025231836,0.044000928,0,0.060195867,0.001588153,0.004768782,0.004067612,0,0,0.01491506,0.010437098,0,0.021927394,0.136081397,0.008086777,0,0,0.005828475,0,4.06E-05,0.004743212,0.023022138,0.041102962,0.046180249,0,0.006580127,0.046621335,0.010977168,0.004188552,0,0.816584257,26.03285805,3.983374197,1.548682466,0.07874728,0.334430293,10.03780823,10.03780823,2.460366659,3.979075171,5.368745654,1013.395877,0.208679073,0.015598415,0.001653667,1.36E-18,0,8.98E-18,1.52E-21,0.000113082,0.02634387,0.043274438,0,0.004562063,0.016372594,0,0.021389343,0.014238194,1.18E-19,0.030000917,0,0.013639943,0.094657268,0.047869964,0.050549325,0.007030063,0.000743508,0.034447003,3.44E-19,0,0,0,0.030678034,0.028814744,2.94E-18,5.62E-19,0.11691855,0,0.132977308,0.026056827,0.159034135,0.001362661,0.214511526,0.019641999,0.000256671,0.009997914,0.018590682,5.03E-07,0.735638044 TCGA-61-2012-01,0.041118056,0.179066228,0.193257748,0.235159475,0.034471381,0.585950047,0,0.004555373,0.127661324,0.088863792,0,0.102729963,0,0.046888814,0.050923283,0,0,0.049366498,0.025688737,0.146741073,0.124974338,0.134090081,0,0,0,0.076271441,0,0.021245283,0,0.003097428,0.086803377,0.060422976,0,0.069851286,0,0.031882071,0.03462531,0,0,0.033566774,0.017467069,0.099776661,0.084976359,0.091174613,0,0,0,0.051860801,0,0.01444574,0.022198456,0.056186634,0.061804354,0.018574639,0.023984488,0.018672564,0,0.02495696,0.028588906,0,0.745033,37.67104585,5.695665696,3.615855783,0.184704229,13.74369097,15.12494527,15.12494527,2.719210173,7.071790611,3.652600706,194.7067208,0.252941552,0.080833002,0.001769921,1.54E-18,2.75E-18,1.93E-18,4.24E-20,1.13E-21,0.005077412,0.069252749,9.82E-19,0.042357402,0,7.93E-19,0.016527629,0,5.97E-18,0.023217,5.22E-19,0.002657354,0.090435429,0.051500324,0.040527624,0.004661136,0.001078132,0.054545255,0,6.47E-20,0,1.05E-17,0.014803298,0.068821906,0,1.25E-17,0.238542199,0,0.168053242,0.0116085,0.179661742,0.027146222,0.027947498,0.044573024,0.014410322,0.013473343,0.017017,1.70E-09,0.85543259 TCGA-61-2016-01,0.173253092,0.108551459,0.240060571,0.094859407,0.100361712,0.595597229,0.070191883,0,0.006472967,0.086063354,0,0.222675115,0,0.023130815,0.045826622,0,0,0.052156002,0.059141109,0,0.025388187,0.366597049,0,0.018932395,0,0.023424502,0,0,0.025477159,0,0.002349457,0.031237939,0,0.080823153,0,0.008395664,0.016633435,0,0,0.018930775,0.021466121,0,0.00921501,0.1330617,0,0.006871787,0,0.008502262,0,0,0.010199528,0.01091034,0.03595893,0.119151491,0,0.009114078,0.071162484,0.011184642,0.008825663,0,0.723492844,7.008206939,2.164347964,3.09628059,0.25141585,11.89446128,11.89224156,11.89224156,1.845157945,7.684225227,8.704707145,119.3009888,0.175929191,0.034465433,0,2.71E-20,6.13E-19,7.91E-19,0,0,2.74E-19,0.022460306,0,0.001738971,0.009199674,2.47E-18,0.006196469,0.013357705,0,0.047277773,0,0.089734827,0.03592133,0.018817042,0.028613186,0.019476911,0,0.007634428,0.001166373,0,7.34E-19,0,0.002316857,0,1.15E-18,0.017719305,0.023990881,1.35E-18,0.069129715,0.030317739,0.099447454,0.002583453,0.017896205,0.048780145,0.01853426,0.031598266,0.015847208,1.64E-09,0.864760462 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